AMP
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | O1P | doub | 1.48Å | 1.54Å | |
| P | O2P | sing | 1.61Å | 1.48Å | |
| P | O3P | sing | 1.61Å | 1.55Å | |
| P | O5' | sing | 1.61Å | 1.61Å | |
| O2P | HOP2 | sing | 0.97Å | 0.95Å | |
| O3P | HOP3 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.41Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.42Å | |
| C4' | C3' | sing | 1.54Å | 1.52Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C3' | O3' | sing | 1.43Å | 1.41Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C2' | C1' | sing | 1.55Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | N9 | sing | 1.47Å | 1.48Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N9 | C8 | sing | 1.36Å | 1.37Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.36Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| N7 | C5 | sing | 1.35Å | 1.35Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.38Å | Aromatic |
| C5 | C4 | doub | 1.41Å | 1.40Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.33Å | |
| C6 | N1 | doub | 1.33Å | 1.39Å | Aromatic |
| N6 | HN61 | sing | 0.97Å | 1.00Å | |
| N6 | HN62 | sing | 0.97Å | 1.00Å | |
| N1 | C2 | sing | 1.32Å | 1.38Å | Aromatic |
| C2 | N3 | doub | 1.32Å | 1.39Å | Aromatic |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| N3 | C4 | sing | 1.33Å | 1.37Å | Aromatic |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1P | P | O2P | 109.1° | 109.4° |
| O1P | P | O3P | 109.7° | 109.5° |
| O1P | P | O5' | 110.1° | 109.5° |
| O2P | P | O3P | 109.8° | 109.4° |
| O2P | P | O5' | 110.1° | 109.5° |
| P | O2P | HOP2 | 109.5° | 114.0° |
| O3P | P | O5' | 107.9° | 109.5° |
| P | O3P | HOP3 | 109.5° | 114.0° |
| P | O5' | C5' | 120.9° | 122.9° |
| O5' | C5' | C4' | 111.2° | 109.4° |
| O5' | C5' | H5'1 | 109.1° | 109.5° |
| O5' | C5' | H5'2 | 109.0° | 109.5° |
| C4' | C5' | H5'1 | 109.0° | 109.5° |
| C4' | C5' | H5'2 | 109.0° | 109.4° |
| C5' | C4' | O4' | 110.4° | 109.9° |
| C5' | C4' | C3' | 112.3° | 109.9° |
| C5' | C4' | H4' | 108.4° | 109.9° |
| H5'1 | C5' | H5'2 | 109.5° | 109.5° |
| O4' | C4' | C3' | 107.4° | 107.3° |
| O4' | C4' | H4' | 109.8° | 109.9° |
| C4' | O4' | C1' | 112.3° | 107.0° |
| C3' | C4' | H4' | 108.4° | 110.0° |
| C4' | C3' | O3' | 110.5° | 110.5° |
| C4' | C3' | C2' | 105.2° | 104.2° |
| C4' | C3' | H3' | 109.3° | 110.5° |
| O4' | C1' | C2' | 106.6° | 103.5° |
| O4' | C1' | N9 | 107.6° | 110.7° |
| O4' | C1' | H1' | 110.0° | 110.6° |
| O3' | C3' | C2' | 111.5° | 110.5° |
| O3' | C3' | H3' | 110.9° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C2' | C3' | H3' | 109.3° | 110.6° |
| C3' | C2' | O2' | 111.9° | 110.9° |
| C3' | C2' | C1' | 105.2° | 102.1° |
| C3' | C2' | H2' | 109.2° | 110.9° |
| O2' | C2' | C1' | 110.6° | 111.0° |
| O2' | C2' | H2' | 110.7° | 110.8° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C1' | C2' | H2' | 109.1° | 110.9° |
| C2' | C1' | N9 | 115.0° | 110.6° |
| C2' | C1' | H1' | 108.5° | 110.6° |
| N9 | C1' | H1' | 109.0° | 110.7° |
| C1' | N9 | C8 | 126.1° | 126.3° |
| C1' | N9 | C4 | 126.4° | 126.3° |
| C8 | N9 | C4 | 107.4° | 107.5° |
| N9 | C8 | N7 | 109.5° | 110.0° |
| N9 | C8 | H8 | 125.3° | 125.0° |
| N9 | C4 | C5 | 106.4° | 105.9° |
| N9 | C4 | N3 | 132.1° | 135.0° |
| N7 | C8 | H8 | 125.2° | 125.0° |
| C8 | N7 | C5 | 107.7° | 109.4° |
| N7 | C5 | C6 | 130.0° | 134.7° |
| N7 | C5 | C4 | 109.0° | 107.2° |
| C6 | C5 | C4 | 121.0° | 118.1° |
| C5 | C6 | N6 | 120.6° | 120.8° |
| C5 | C6 | N1 | 117.2° | 118.4° |
| C5 | C4 | N3 | 121.5° | 119.1° |
| N6 | C6 | N1 | 122.2° | 120.8° |
| C6 | N6 | HN61 | 109.5° | 120.0° |
| C6 | N6 | HN62 | 109.4° | 120.1° |
| C6 | N1 | C2 | 121.5° | 121.2° |
| HN61 | N6 | HN62 | 109.5° | 120.0° |
| N1 | C2 | N3 | 121.0° | 122.5° |
| N1 | C2 | H2 | 119.5° | 118.8° |
| N3 | C2 | H2 | 119.5° | 118.7° |
| C2 | N3 | C4 | 117.9° | 120.6° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1P | P | O2P | O3P | 120.3° | 120.0° |
| O1P | P | O2P | O5' | 121.0° | 120.0° |
| O1P | P | O3P | O5' | 120.0° | 120.1° |
| O1P | P | O2P | HOP2 | 0.0° | 60.0° |
| O1P | P | O3P | HOP3 | 0.0° | 179.9° |
| O1P | P | O5' | C5' | 54.4° | 55.0° |
| O2P | P | O3P | O5' | 120.1° | 120.0° |
| O2P | P | O3P | HOP3 | 119.9° | 60.0° |
| O2P | P | O5' | C5' | 174.8° | 175.0° |
| O3P | P | O2P | HOP2 | 120.3° | 60.0° |
| O3P | P | O5' | C5' | 65.3° | 65.0° |
| O5' | P | O2P | HOP2 | 121.0° | 180.0° |
| O5' | P | O3P | HOP3 | 120.0° | 60.0° |
| P | O5' | C5' | C4' | 145.7° | 180.0° |
| P | O5' | C5' | H5'1 | 94.1° | 60.0° |
| P | O5' | C5' | H5'2 | 25.4° | 60.0° |
| O5' | C5' | C4' | H5'1 | 120.3° | 120.0° |
| O5' | C5' | C4' | H5'2 | 120.3° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 119.2° | 120.1° |
| O5' | C5' | C4' | O4' | 64.3° | 66.4° |
| O5' | C5' | C4' | C3' | 55.6° | 175.7° |
| O5' | C5' | C4' | H4' | 175.4° | 54.6° |
| C4' | C5' | H5'1 | H5'2 | 119.2° | 119.9° |
| C5' | C4' | O4' | C3' | 122.8° | 119.5° |
| C5' | C4' | O4' | H4' | 119.5° | 121.0° |
| C5' | C4' | C3' | H4' | 119.8° | 121.1° |
| C5' | C4' | O4' | C1' | 125.8° | 145.9° |
| C5' | C4' | C3' | O3' | 126.3° | 119.8° |
| C5' | C4' | C3' | C2' | 113.2° | 121.5° |
| C5' | C4' | C3' | H3' | 4.1° | 2.7° |
| H5'1 | C5' | C4' | O4' | 175.4° | 53.6° |
| H5'1 | C5' | C4' | C3' | 64.7° | 64.3° |
| H5'1 | C5' | C4' | H4' | 55.1° | 174.6° |
| H5'2 | C5' | C4' | O4' | 55.9° | 173.5° |
| H5'2 | C5' | C4' | C3' | 175.9° | 55.7° |
| H5'2 | C5' | C4' | H4' | 64.4° | 65.5° |
| O4' | C4' | C3' | H4' | 118.6° | 119.4° |
| O4' | C4' | C3' | O3' | 112.1° | 120.7° |
| O4' | C4' | C3' | C2' | 8.5° | 2.0° |
| O4' | C4' | C3' | H3' | 125.7° | 116.8° |
| C4' | O4' | C1' | C2' | 13.1° | 40.0° |
| C4' | O4' | C1' | N9 | 137.0° | 158.5° |
| C4' | O4' | C1' | H1' | 104.3° | 78.5° |
| C3' | C4' | O4' | C1' | 2.9° | 26.5° |
| C4' | C3' | O3' | C2' | 116.7° | 114.8° |
| C4' | C3' | O3' | H3' | 121.3° | 122.5° |
| C4' | C3' | C2' | H3' | 117.2° | 118.7° |
| C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
| C4' | C3' | C2' | O2' | 135.9° | 139.1° |
| C4' | C3' | C2' | C1' | 15.8° | 20.9° |
| C4' | C3' | C2' | H2' | 101.2° | 97.3° |
| H4' | C4' | O4' | C1' | 114.8° | 93.0° |
| H4' | C4' | C3' | O3' | 6.5° | 1.2° |
| H4' | C4' | C3' | C2' | 127.1° | 117.4° |
| H4' | C4' | C3' | H3' | 115.7° | 123.7° |
| O4' | C1' | C2' | C3' | 17.8° | 37.0° |
| O4' | C1' | C2' | O2' | 138.7° | 155.2° |
| O4' | C1' | C2' | N9 | 119.2° | 118.5° |
| O4' | C1' | C2' | H1' | 118.4° | 118.5° |
| O4' | C1' | C2' | H2' | 99.3° | 81.2° |
| O4' | C1' | N9 | H1' | 119.2° | 123.0° |
| O4' | C1' | N9 | C8 | 52.0° | 23.6° |
| O4' | C1' | N9 | C4 | 128.1° | 156.8° |
| O3' | C3' | C2' | H3' | 123.0° | 122.5° |
| O3' | C3' | C2' | O2' | 16.1° | 20.4° |
| O3' | C3' | C2' | C1' | 104.1° | 97.9° |
| O3' | C3' | C2' | H2' | 138.9° | 143.9° |
| C2' | C3' | O3' | HO3' | 63.3° | 65.2° |
| C3' | C2' | O2' | C1' | 117.0° | 112.7° |
| C3' | C2' | O2' | H2' | 122.0° | 123.6° |
| C3' | C2' | C1' | H2' | 117.0° | 118.2° |
| C3' | C2' | O2' | HO2' | 180.0° | 61.4° |
| C3' | C2' | C1' | N9 | 136.9° | 155.5° |
| C3' | C2' | C1' | H1' | 100.7° | 81.5° |
| H3' | C3' | O3' | HO3' | 58.7° | 57.5° |
| H3' | C3' | C2' | O2' | 106.9° | 102.1° |
| H3' | C3' | C2' | C1' | 133.0° | 139.6° |
| H3' | C3' | C2' | H2' | 16.0° | 21.4° |
| O2' | C2' | C1' | H2' | 122.0° | 123.6° |
| O2' | C2' | C1' | N9 | 102.1° | 86.3° |
| O2' | C2' | C1' | H1' | 20.3° | 36.7° |
| C1' | C2' | O2' | HO2' | 63.0° | 174.1° |
| C2' | C1' | N9 | H1' | 122.1° | 122.9° |
| C2' | C1' | N9 | C8 | 66.7° | 90.5° |
| C2' | C1' | N9 | C4 | 113.2° | 89.1° |
| H2' | C2' | O2' | HO2' | 58.0° | 62.2° |
| H2' | C2' | C1' | N9 | 19.9° | 37.4° |
| H2' | C2' | C1' | H1' | 142.3° | 160.3° |
| C1' | N9 | C8 | C4 | 179.9° | 179.7° |
| C1' | N9 | C8 | N7 | 179.9° | 180.0° |
| C1' | N9 | C8 | H8 | 0.1° | 0.0° |
| C1' | N9 | C4 | C5 | 179.6° | 179.9° |
| C1' | N9 | C4 | N3 | 0.6° | 0.9° |
| H1' | C1' | N9 | C8 | 171.2° | 146.6° |
| H1' | C1' | N9 | C4 | 8.9° | 33.8° |
| N9 | C8 | N7 | H8 | 180.0° | 180.0° |
| N9 | C8 | N7 | C5 | 0.2° | 0.0° |
| C8 | N9 | C4 | C5 | 0.5° | 0.4° |
| C8 | N9 | C4 | N3 | 179.5° | 179.4° |
| C4 | N9 | C8 | N7 | 0.2° | 0.3° |
| C4 | N9 | C8 | H8 | 179.9° | 179.7° |
| N9 | C4 | C5 | N7 | 0.6° | 0.4° |
| N9 | C4 | C5 | C6 | 179.9° | 179.8° |
| N9 | C4 | C5 | N3 | 179.2° | 179.2° |
| N9 | C4 | N3 | C2 | 179.5° | 179.6° |
| C8 | N7 | C5 | C6 | 179.9° | 180.0° |
| C8 | N7 | C5 | C4 | 0.5° | 0.3° |
| H8 | C8 | N7 | C5 | 179.8° | 180.0° |
| N7 | C5 | C6 | C4 | 179.4° | 179.7° |
| N7 | C5 | C6 | N6 | 0.7° | 0.0° |
| N7 | C5 | C6 | N1 | 179.0° | 180.0° |
| N7 | C5 | C4 | N3 | 179.8° | 179.6° |
| C5 | C6 | N6 | N1 | 178.2° | 180.0° |
| C5 | C6 | N6 | HN61 | 178.2° | 0.1° |
| C5 | C6 | N6 | HN62 | 58.2° | 179.9° |
| C5 | C6 | N1 | C2 | 2.4° | 0.0° |
| C6 | C5 | C4 | N3 | 0.7° | 0.6° |
| C4 | C5 | C6 | N6 | 179.9° | 179.7° |
| C4 | C5 | C6 | N1 | 1.6° | 0.3° |
| C5 | C4 | N3 | C2 | 0.6° | 0.7° |
| C6 | N6 | HN61 | HN62 | 120.0° | 179.9° |
| N6 | C6 | N1 | C2 | 179.3° | 179.9° |
| N1 | C6 | N6 | HN61 | 0.0° | 180.0° |
| N1 | C6 | N6 | HN62 | 120.0° | 0.1° |
| C6 | N1 | C2 | N3 | 2.4° | 0.1° |
| C6 | N1 | C2 | H2 | 177.6° | 180.0° |
| N1 | C2 | N3 | H2 | 180.0° | 179.9° |
| N1 | C2 | N3 | C4 | 1.4° | 0.4° |
| H2 | C2 | N3 | C4 | 178.6° | 179.6° |
