Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

AMI

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.55Å1.55Å
C1C5sing1.55Å1.54Å
C1O7sing1.45Å1.43Å
C1H1sing1.09Å1.11Å
C2C3sing1.53Å1.53Å
C2N2sing1.47Å1.41Å
C2H2sing1.09Å1.11Å
C3C4sing1.54Å1.53Å
C3O3sing1.43Å1.41Å
C3H3sing1.09Å1.12Å
C4C5sing1.53Å1.53Å
C4O4sing1.43Å1.43Å
C4H4sing1.09Å1.11Å
C5C6sing1.53Å1.54Å
C5H5sing1.09Å1.12Å
C6O6sing1.43Å1.41Å
C6H61sing1.09Å1.12Å
C6H62sing1.09Å1.11Å
C7N2doub1.30Å1.36Å
C7N7sing1.37Å1.35Å
C7O7sing1.35Å1.35Å
C8N7sing1.47Å1.42Å
C8H81sing1.09Å1.12Å
C8H82sing1.09Å1.11Å
C8H83sing1.09Å1.12Å
C9N7sing1.46Å1.43Å
C9H91sing1.09Å1.12Å
C9H92sing1.09Å1.12Å
C9H93sing1.09Å1.11Å
O3HO3sing0.97Å0.95Å
O4HO4sing0.97Å0.95Å
O6HO6sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C5105.1°104.8°
C2C1O7103.8°100.7°
C2C1H1115.9°114.1°
C1C2C3104.4°105.7°
C1C2N2104.5°101.9°
C1C2H2116.1°113.0°
C5C1O7109.9°108.9°
C5C1H1110.3°113.3°
C1C5C4106.1°107.8°
C1C5C6112.9°109.8°
C1C5H5109.9°109.8°
O7C1H1111.5°114.0°
C1O7C7108.8°107.5°
C3C2N2110.7°110.1°
C3C2H2110.5°112.6°
C2C3C4104.0°106.3°
C2C3O3109.1°110.1°
C2C3H3113.5°110.1°
N2C2H2110.4°112.8°
C2N2C7108.7°108.3°
C4C3O3110.2°110.1°
C4C3H3112.4°110.1°
C3C4C5100.0°107.2°
C3C4O4112.6°109.9°
C3C4H4113.0°109.9°
O3C3H3107.6°110.0°
C3O3HO3109.0°106.8°
C5C4O4107.7°110.0°
C5C4H4117.6°109.9°
C4C5C6110.6°109.8°
C4C5H5112.2°109.9°
O4C4H4106.0°109.9°
C4O4HO4112.6°106.8°
C6C5H5105.3°109.8°
C5C6O6107.2°109.5°
C5C6H61113.0°109.4°
C5C6H62113.1°109.5°
O6C6H61113.0°109.4°
O6C6H62113.1°109.5°
C6O6HO6107.3°106.9°
H61C6H6297.4°109.5°
N2C7N7130.2°123.1°
N2C7O7113.1°113.8°
N7C7O7116.7°123.1°
C7N7C8117.7°120.0°
C7N7C9125.1°120.0°
N7C8H81117.7°109.5°
N7C8H82109.2°109.4°
N7C8H83109.2°109.5°
C8N7C9117.1°120.0°
H81C8H82109.3°109.5°
H81C8H83109.2°109.5°
H82C8H83100.9°109.5°
N7C9H91125.2°109.5°
N7C9H92106.7°109.5°
N7C9H93106.7°109.4°
H91C9H92106.6°109.6°
H91C9H93106.7°109.4°
H92C9H93102.9°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C5O7111.1°107.0°
C2C1C5H1125.6°125.0°
C2C1O7H1125.4°122.6°
C1C2C3N2111.9°109.3°
C1C2C3H2125.5°123.9°
C1C2N2H2125.5°121.4°
C1C2C3C434.2°28.2°
C1C2C3O3151.8°91.1°
C1C2C3H388.2°147.4°
C2C1C5C418.6°16.6°
C2C1C5C6139.9°136.2°
C2C1C5H5102.9°103.0°
C1C2N2C79.0°16.2°
C2C1O7C78.3°26.9°
C5C1O7H1122.7°127.6°
C5C1C2C39.5°27.5°
C5C1C2N2125.8°87.6°
C5C1C2H2112.3°151.1°
C1C5C4C339.0°0.5°
C1C5C4C6122.7°119.6°
C1C5C4H5120.0°119.6°
C1C5C4O4156.8°119.0°
C1C5C4H483.6°119.9°
C1C5C6H5119.9°120.8°
C1C5C6O670.0°179.7°
C1C5C6H61164.8°59.8°
C1C5C6H6255.3°60.2°
C5C1O7C7120.2°82.9°
O7C1C2C3105.9°140.4°
O7C1C2N210.4°25.4°
O7C1C2H2132.3°95.9°
O7C1C5C4129.7°123.6°
O7C1C5C6109.1°116.8°
O7C1C5H58.2°4.0°
C1O7C7N23.1°18.8°
C1O7C7N7174.8°161.6°
H1C1C2C3131.6°97.0°
H1C1C2N2112.1°147.9°
H1C1C2H29.7°26.6°
H1C1C5C4107.0°108.4°
H1C1C5C614.3°11.2°
H1C1C5H5131.5°132.0°
H1C1O7C7117.1°149.5°
C3C2N2H2122.6°126.7°
C2C3C4O3116.8°119.3°
C2C3C4H3123.2°119.2°
C2C3O3H3123.5°121.5°
C2C3C4C545.0°17.8°
C2C3C4O4159.1°101.7°
C2C3C4H480.8°137.2°
C3C2N2C7102.9°128.1°
C2C3O3HO3180.0°180.0°
N2C2C3C4146.1°81.1°
N2C2C3O396.3°159.6°
N2C2C3H323.7°38.1°
C2N2C7N7178.2°179.9°
C2N2C7O74.2°0.5°
H2C2C3C491.3°152.1°
H2C2C3O326.3°32.8°
H2C2C3H3146.3°88.7°
H2C2N2C7134.5°105.2°
C4C3O3H3122.9°121.5°
C3C4C5O4117.8°119.5°
C3C4C5H4122.7°119.4°
C3C4O4H4124.0°121.1°
C3C4C5C6161.8°119.1°
C3C4C5H581.0°120.1°
C4C3O3HO366.5°63.1°
C3C4O4HO4180.0°61.5°
O3C3C4C5161.8°101.5°
O3C3C4O484.2°139.0°
O3C3C4H435.9°17.9°
H3C3C4C578.2°137.0°
H3C3C4O435.9°17.5°
H3C3C4H4156.0°103.6°
H3C3O3HO356.4°58.5°
C5C4O4H4126.6°121.1°
C4C5C6H5121.4°120.9°
C4C5C6O6171.3°61.4°
C4C5C6H6146.1°58.5°
C4C5C6H6263.4°178.5°
C5C4O4HO470.7°179.3°
O4C4C5C680.4°121.5°
O4C4C5H536.8°0.6°
H4C4C5C639.1°0.4°
H4C4C5H5156.4°120.5°
H4C4O4HO456.0°59.6°
C5C6O6H61125.2°120.0°
C5C6O6H62125.3°120.0°
C5C6H61H62119.0°120.0°
C5C6O6HO6180.0°180.0°
H5C5C6O649.9°59.5°
H5C5C6H6175.4°179.4°
H5C5C6H62175.2°60.6°
O6C6H61H62119.0°120.0°
H61C6O6HO654.8°60.0°
H62C6O6HO654.7°60.0°
N2C7N7O7177.5°179.6°
N2C7N7C83.9°0.2°
N2C7N7C9176.2°180.0°
C7N7C8C9179.9°179.8°
C7N7C8H81180.0°179.9°
C7N7C8H8254.7°60.1°
C7N7C8H8354.8°59.9°
C7N7C9H91180.0°180.0°
C7N7C9H9254.8°59.8°
C7N7C9H9354.7°60.1°
O7C7N7C8178.5°179.7°
O7C7N7C91.4°0.4°
N7C8H81H82125.3°119.9°
N7C8H81H83125.2°120.0°
N7C8H82H83115.0°120.0°
C8N7C9H910.1°0.1°
C8N7C9H92125.1°120.0°
C8N7C9H93125.4°120.1°
H81C8H82H83115.0°120.1°
H81C8N7C90.1°0.1°
H82C8N7C9125.4°120.1°
H83C8N7C9125.1°119.9°
N7C9H91H92125.2°120.1°
N7C9H91H93125.3°120.0°
N7C9H92H93112.1°119.9°
H91C9H92H93112.1°119.9°

246704

PDB entries from 2025-12-24

PDB statisticsPDBj update infoContact PDBjnumon