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AKM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O4AC4sing1.44Å1.44Å
C6C5sing1.53Å1.52Å
O3PP2doub1.48Å1.52Å
C5O5sing1.42Å1.43Å
C5C4sing1.52Å1.53Å
O5C1sing1.42Å1.42Å
C4O4Bsing1.44Å1.44Å
C4C3sing1.52Å1.54Å
O1P2sing1.61Å1.60Å
O1C1sing1.43Å1.42Å
N3C3sing1.48Å1.47Å
P2O4Psing1.61Å1.52Å
P2OPPsing1.61Å1.60Å
C2C1sing1.53Å1.54Å
C2C3sing1.53Å1.53Å
C3C3Msing1.53Å1.53Å
O3'C3'sing1.43Å1.42Å
OPPPsing1.61Å1.59Å
C3'C4'sing1.55Å1.53Å
C3'C2'sing1.55Å1.52Å
PO1Pdoub1.48Å1.50Å
PO2Psing1.61Å1.53Å
PO5'sing1.61Å1.61Å
C4'C5'sing1.53Å1.52Å
C4'O4'sing1.44Å1.43Å
C5'O5'sing1.43Å1.43Å
C2'C1'sing1.54Å1.53Å
O4'C1'sing1.44Å1.44Å
C1'N11sing1.46Å1.47Å
O21C21doub1.22Å1.36Å
N11C21sing1.35Å1.33Å
N11C61sing1.37Å1.35Å
C21N31sing1.35Å1.34Å
C61C51doub1.35Å1.38Å
N31C41sing1.35Å1.35Å
C51C41sing1.42Å1.47Å
C51C5Asing1.51Å1.50Å
C41O41doub1.22Å1.35Å
O2PH1sing0.97Å0.95Å
C1H2sing1.09Å1.10Å
C2H3sing1.09Å1.10Å
C2H4sing1.09Å1.10Å
C3MH5sing1.09Å1.10Å
C3MH6sing1.09Å1.10Å
C3MH7sing1.09Å1.10Å
N3H8sing1.01Å1.00Å
N3H9sing1.01Å1.00Å
O4AH11sing0.97Å0.95Å
O4BH12sing0.97Å0.95Å
C5H13sing1.11Å1.10Å
C6H14sing1.09Å1.10Å
C6H15sing1.09Å1.10Å
C6H16sing1.09Å1.10Å
O4PH17sing0.97Å0.95Å
C5'H18sing1.09Å1.10Å
C5'H19sing1.09Å1.10Å
C4'H20sing1.09Å1.10Å
C3'H21sing1.09Å1.10Å
O3'H22sing0.97Å0.95Å
C2'H23sing1.09Å1.10Å
C2'H24sing1.09Å1.10Å
C1'H25sing1.09Å1.10Å
N31H26sing0.97Å1.00Å
C5AH27sing1.09Å1.10Å
C5AH28sing1.09Å1.10Å
C5AH29sing1.09Å1.10Å
C61H30sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O4AC4C594.3°108.8°
O4AC4O4B104.0°107.5°
O4AC4C3111.1°108.6°
C4O4AH11109.5°113.9°
C6C5O5109.9°110.8°
C6C5C4120.7°111.2°
C6C5H13100.4°106.6°
C5C6H14109.5°109.5°
C5C6H15109.4°109.5°
C5C6H16109.4°109.5°
O3PP2O1106.9°109.5°
O3PP2O4P116.0°109.5°
O3PP2OPP103.3°109.5°
O5C5C4119.3°113.5°
C5O5C1121.0°116.5°
O5C5H13101.1°107.0°
C5C4O4B117.4°108.7°
C5C4C3118.1°114.5°
C4C5H13100.4°107.2°
O5C1O1100.0°109.2°
O5C1C2117.3°108.7°
O5C1H2110.2°110.7°
O4BC4C3109.7°108.6°
C4O4BH12109.5°114.0°
C4C3N3104.3°108.1°
C4C3C2113.6°111.9°
C4C3C3M116.8°110.9°
P2O1C1125.2°123.0°
O1P2O4P108.4°109.5°
O1P2OPP104.4°109.4°
O1C1C2110.1°109.1°
O1C1H2110.3°108.8°
N3C3C2111.2°108.0°
N3C3C3M108.9°107.7°
C3N3H8109.5°111.0°
C3N3H9109.5°111.0°
O4PP2OPP116.8°109.5°
P2O4PH17109.5°114.0°
P2OPPP129.2°134.0°
C1C2C3110.2°110.2°
C2C1H2108.6°110.4°
C1C2H3109.3°109.3°
C1C2H4109.3°109.3°
C2C3C3M102.3°110.2°
C3C2H3109.3°109.6°
C3C2H4109.3°109.5°
C3C3MH5109.5°109.5°
C3C3MH6109.5°109.5°
C3C3MH7109.5°109.4°
O3'C3'C4'107.7°110.9°
O3'C3'C2'109.1°110.9°
O3'C3'H21112.5°110.8°
C3'O3'H22109.5°114.0°
OPPPO1P105.4°109.5°
OPPPO2P109.1°109.5°
OPPPO5'108.2°109.5°
C4'C3'C2'105.6°102.1°
C3'C4'C5'113.7°110.6°
C3'C4'O4'104.4°103.5°
C3'C4'H20109.1°110.8°
C4'C3'H21110.8°110.9°
C3'C2'C1'105.3°104.2°
C2'C3'H21110.9°110.9°
C3'C2'H23110.5°110.5°
C3'C2'H24110.5°110.5°
O1PPO2P118.6°109.5°
O1PPO5'108.7°109.4°
O2PPO5'106.6°109.4°
PO2PH1109.5°114.0°
PO5'C5'116.4°123.0°
C5'C4'O4'109.7°110.6°
C4'C5'O5'103.1°109.5°
C4'C5'H18111.0°109.5°
C4'C5'H19111.0°109.5°
C5'C4'H20109.3°110.6°
C4'O4'C1'109.9°107.0°
O4'C4'H20110.6°110.6°
O5'C5'H18111.1°109.5°
O5'C5'H19111.0°109.5°
C2'C1'O4'106.2°107.3°
C2'C1'N11116.8°109.9°
C1'C2'H23110.5°110.5°
C1'C2'H24110.5°110.5°
C2'C1'H25107.6°109.9°
O4'C1'N11109.1°109.9°
O4'C1'H25108.7°109.9°
C1'N11C21118.6°119.7°
C1'N11C61119.1°119.7°
N11C1'H25108.3°109.9°
O21C21N11119.6°119.5°
O21C21N31117.3°119.5°
C21N11C61122.2°120.6°
N11C21N31123.0°121.0°
N11C61C51119.3°119.7°
N11C61H30120.3°120.1°
C21N31C41118.2°120.3°
C21N31H26120.9°119.9°
C61C51C41116.5°119.1°
C61C51C5A123.6°120.4°
C51C61H30120.4°120.2°
N31C41C51120.7°119.3°
N31C41O41121.3°120.3°
C41N31H26120.9°119.8°
C41C51C5A119.9°120.4°
C51C41O41118.0°120.3°
C51C5AH27109.5°109.4°
C51C5AH28109.4°109.5°
C51C5AH29109.5°109.5°
H3C2H4109.5°108.8°
H5C3MH6109.4°109.5°
H5C3MH7109.5°109.5°
H6C3MH7109.5°109.4°
H8N3H9109.4°110.9°
H14C6H15109.5°109.5°
H14C6H16109.5°109.5°
H15C6H16109.5°109.4°
H18C5'H19109.5°109.5°
H23C2'H24109.5°110.6°
H27C5AH28109.5°109.4°
H27C5AH29109.5°109.5°
H28C5AH29109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O4AC4C5C697.6°152.2°
O4AC4C5O5120.3°82.1°
O4AC4C5O4B108.2°116.8°
O4AC4C5C3116.7°121.7°
O4AC4O4BC3118.9°117.4°
O4AC4C3N336.7°38.4°
O4AC4C3C284.5°80.4°
O4AC4C3C3M156.8°156.2°
O4AC4O4BH12180.0°62.6°
O4AC4C5H1311.1°36.0°
C6C5O5C4145.8°126.0°
C6C5O5H13105.4°115.9°
C6C5C4H13108.8°116.2°
C6C5O5C1148.4°75.1°
C6C5C4O4B10.6°35.4°
C6C5C4C3145.7°86.1°
C5C6H14H15120.0°120.0°
C5C6H14H16120.0°120.0°
C5C6H15H16119.9°120.0°
O3PP2O1O4P125.8°120.0°
O3PP2O1OPP109.1°120.0°
O3PP2O1C1142.9°55.0°
O3PP2O4POPP122.3°120.0°
O3PP2OPPP161.3°45.0°
O3PP2O4PH170.0°180.0°
O5C5C4H13109.1°118.0°
O5C5C4O4B131.5°161.2°
O5C5C4C33.6°39.7°
C5O5C1O1144.3°179.6°
C5O5C1C225.4°60.7°
C5O5C1H299.5°60.7°
O5C5C6H14180.0°60.0°
O5C5C6H1560.0°180.0°
O5C5C6H1660.0°60.0°
C4C5O5C12.6°50.8°
C5C4O4BC3138.6°125.0°
C5C4C3N3144.0°160.2°
C5C4C3C222.8°41.4°
C5C4C3C3M95.9°82.0°
C5C4O4AH11180.0°57.5°
C5C4O4BH1277.5°55.0°
C4C5C6H1434.7°172.7°
C4C5C6H1585.3°52.7°
C4C5C6H16154.7°67.3°
O5C1O1P273.2°90.9°
O5C1O1C2124.1°118.7°
O5C1O1H2116.1°120.9°
O5C1C2H2125.7°121.6°
O5C1C2C350.6°59.3°
O5C1C2H369.5°61.2°
O5C1C2H4170.7°179.7°
C1O5C5H13106.1°169.0°
O4BC4C3N377.8°78.3°
O4BC4C3C2161.0°163.0°
O4BC4C3C3M42.3°39.5°
O4BC4O4AH1160.4°60.0°
O4BC4C5H13119.4°80.8°
C4C3N3C2122.7°121.3°
C4C3N3C3M125.3°119.8°
C4C3C2C147.5°51.1°
C4C3C2C3M126.7°123.8°
C4C3C2H372.6°69.3°
C4C3C2H4167.6°171.4°
C4C3C3MH5180.0°64.5°
C4C3C3MH660.0°55.5°
C4C3C3MH760.0°175.5°
C4C3N3H8180.0°178.7°
C4C3N3H960.0°54.8°
C3C4O4AH1157.6°177.3°
C3C4O4BH1261.0°180.0°
C3C4C5H13105.6°157.7°
O1P2O4POPP117.5°119.9°
P2O1C1C2162.7°150.4°
O1P2OPPP87.1°165.0°
P2O1C1H242.9°30.0°
O1P2O4PH17120.2°59.9°
C1O1P2O4P17.2°65.0°
C1O1P2OPP108.0°175.0°
O1C1C2H2120.9°119.4°
O1C1C2C3164.0°178.3°
O1C1C2H343.9°57.7°
O1C1C2H475.9°61.3°
N3C3C2C1164.7°170.0°
N3C3C2C3M116.0°117.3°
N3C3C2H344.6°49.6°
N3C3C2H475.2°69.8°
N3C3C3MH562.3°177.5°
N3C3C3MH6177.7°62.5°
N3C3C3MH757.7°57.5°
C3N3H8H9120.0°124.0°
O4PP2OPPP32.6°75.0°
P2OPPPO1P169.8°45.0°
P2OPPPO2P41.4°75.0°
P2OPPPO5'74.1°165.0°
OPPP2O4PH17122.3°60.0°
C1C2C3H3120.1°120.4°
C1C2C3H4120.1°120.3°
C1C2C3C3M79.2°72.7°
C1C2H3H4119.7°119.3°
C3C2C1H275.1°62.3°
C3C2H3H4119.7°119.8°
C2C3C3MH555.4°59.9°
C2C3C3MH664.6°180.0°
C2C3C3MH7175.4°60.0°
C2C3N3H857.3°60.0°
C2C3N3H9177.2°176.1°
C3MC3C2H3160.6°166.9°
C3MC3C2H440.9°47.6°
C3C3MH5H6120.0°120.1°
C3C3MH5H7120.0°120.0°
C3C3MH6H7120.0°120.0°
C3MC3N3H854.7°58.9°
C3MC3N3H965.3°65.0°
O3'C3'C4'C2'116.5°118.2°
O3'C3'C4'H21123.4°123.6°
O3'C3'C2'H21124.4°123.5°
O3'C3'C4'C5'99.2°86.3°
O3'C3'C4'O4'141.3°155.2°
O3'C3'C2'C1'126.4°139.1°
O3'C3'C4'H2023.1°36.7°
O3'C3'C2'H23114.3°102.2°
O3'C3'C2'H247.0°20.5°
OPPPO1PO2P122.5°120.0°
OPPPO1PO5'115.8°120.0°
OPPPO2PO5'116.6°120.0°
OPPPO5'C5'65.0°175.0°
OPPPO2PH1120.6°59.9°
C4'C3'C2'H21120.0°118.2°
C3'C4'C5'O4'116.4°114.1°
C3'C4'C5'H20122.2°123.1°
C3'C4'O4'H20117.2°118.7°
C3'C4'C5'O5'174.2°179.5°
C4'C3'C2'C1'10.8°20.9°
C3'C4'O4'C1'30.6°40.0°
C3'C4'C5'H1855.3°60.5°
C3'C4'C5'H1966.8°59.5°
C4'C3'O3'H22180.0°180.0°
C4'C3'C2'H23130.2°139.5°
C4'C3'C2'H24108.5°97.8°
C2'C3'C4'C5'144.3°155.5°
C2'C3'C4'O4'24.8°37.0°
C3'C2'C1'H23119.3°118.7°
C3'C2'C1'H24119.4°118.7°
C3'C2'C1'O4'6.9°2.0°
C3'C2'C1'N11128.7°121.5°
C2'C3'C4'H2093.3°81.5°
C2'C3'O3'H2265.9°67.3°
C3'C2'H23H24121.9°122.7°
C3'C2'C1'H25109.3°117.5°
O1PPO2PO5'122.8°119.9°
O1PPO5'C5'48.9°55.0°
O1PPO2PH10.0°180.0°
O2PPO5'C5'177.8°65.0°
PO5'C5'C4'148.2°180.0°
O5'PO2PH1122.8°60.1°
PO5'C5'H1829.3°60.0°
PO5'C5'H1992.8°60.0°
C5'C4'O4'H20120.6°122.9°
C4'C5'O5'H18118.9°120.0°
C4'C5'O5'H19119.0°120.0°
C5'C4'O4'C1'152.8°158.5°
C4'C5'H18H19123.0°120.0°
C5'C4'C3'H2124.2°37.3°
O4'C4'C5'O5'69.4°66.4°
C4'O4'C1'C2'23.9°26.5°
C4'O4'C1'N11150.6°145.9°
O4'C4'C5'H18171.7°53.5°
O4'C4'C5'H1949.6°173.6°
O4'C4'C3'H2195.3°81.2°
C4'O4'C1'H2591.5°93.0°
O5'C5'H18H19123.0°120.0°
O5'C5'C4'H2052.0°56.4°
C2'C1'O4'N11126.7°119.5°
C2'C1'O4'H25115.4°119.5°
C2'C1'N11H25121.6°121.0°
C2'C1'N11C21125.0°65.1°
C2'C1'N11C6158.8°114.7°
C1'C2'C3'H21109.2°97.3°
C1'C2'H23H24121.9°122.6°
O4'C1'N11H25118.1°121.1°
O4'C1'N11C21114.7°52.8°
O4'C1'N11C6161.5°127.4°
C1'O4'C4'H2086.6°78.6°
O4'C1'C2'H23112.4°116.7°
O4'C1'C2'H24126.2°120.7°
C1'N11C21O213.6°0.1°
C1'N11C21C61176.1°179.8°
C1'N11C21N31179.1°180.0°
C1'N11C61C51177.5°179.7°
N11C1'C2'H239.4°2.8°
N11C1'C2'H24111.9°119.8°
C1'N11C61H302.5°0.0°
O21C21N11N31177.3°180.0°
O21C21N11C61179.7°179.7°
O21C21N31C41179.5°180.0°
O21C21N31H260.5°0.0°
C21N11C61C511.4°0.5°
N11C21N31C412.2°0.0°
C21N11C1'H253.4°173.9°
N11C21N31H26177.9°179.9°
C21N11C61H30178.6°179.8°
C61N11C21N313.0°0.2°
N11C61C51H30180.0°179.7°
N11C61C51C410.7°0.5°
N11C61C51C5A180.0°179.7°
C61N11C1'H25179.6°6.3°
C21N31C41H26180.0°179.9°
C21N31C41C510.0°0.0°
C21N31C41O41179.0°180.0°
C61C51C41N311.4°0.3°
C61C51C41C5A179.4°179.7°
C61C51C41O41179.6°179.7°
C61C51C5AH27180.0°179.7°
C61C51C5AH2860.0°59.7°
C61C51C5AH2960.0°60.3°
N31C41C51O41179.0°180.0°
N31C41C51C5A179.2°180.0°
C51C41N31H26179.9°180.0°
C41C51C5AH270.7°0.0°
C41C51C5AH28120.7°120.0°
C41C51C5AH29119.3°119.9°
C41C51C61H30179.3°179.8°
C5AC51C41O410.3°0.0°
C51C5AH27H28120.0°120.0°
C51C5AH27H29120.0°120.0°
C51C5AH28H29120.0°120.1°
C5AC51C61H300.1°0.0°
O41C41N31H261.0°0.0°
H2C1C2H3164.8°177.2°
H2C1C2H445.0°58.2°
H5C3MH6H7120.0°120.0°
H13C5C6H1474.1°56.1°
H13C5C6H15165.9°63.9°
H13C5C6H1646.0°176.1°
H14C6H15H16120.0°120.0°
H18C5'C4'H2066.9°176.4°
H19C5'C4'H20171.0°63.6°
H20C4'C3'H21146.5°160.3°
H21C3'O3'H2257.7°56.3°
H21C3'C2'H2310.1°21.3°
H21C3'C2'H24131.4°144.0°
H23C2'C1'H25131.4°123.8°
H24C2'C1'H2510.0°1.1°
H27C5AH28H29120.0°120.0°

223532

PDB entries from 2024-08-07

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