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SummaryGeometryRelated PDB entries

AJD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
OAACAMsing1.35Å1.43Å
OABCAMdoub1.22Å1.24Å
BRACCANsing1.89Å1.93Å
CADCAEdoub1.38Å1.40ÅAromatic
CADCANsing1.39Å1.38ÅAromatic
CADHADsing1.08Å1.08Å
CAECAOsing1.39Å1.37ÅAromatic
CAEHAEsing1.08Å1.08Å
CAFCANdoub1.38Å1.35ÅAromatic
CAFCAPsing1.40Å1.41ÅAromatic
CAFHAFsing1.08Å1.08Å
CAGCAHsing1.53Å1.50Å
CAGCAIsing1.53Å1.47Å
CAGHAGsing1.09Å1.10Å
CAGHAGAsing1.09Å1.10Å
CAHNAKsing1.47Å1.46Å
CAHHAHsing1.09Å1.10Å
CAHHAHAsing1.09Å1.10Å
CAICAQsing1.53Å1.57Å
CAIHAIsing1.09Å1.10Å
CAIHAIAsing1.09Å1.10Å
CAJNAKsing1.47Å1.47Å
CAJCAQsing1.53Å1.49Å
CAJHAJsing1.09Å1.10Å
CAJHAJAsing1.09Å1.10Å
NAKHNAKsing1.01Å1.00Å
NALCAOsing1.39Å1.38Å
NALCAQsing1.47Å1.48Å
NALHNALsing0.97Å1.00Å
CAMCAPsing1.47Å1.50Å
CAOCAPdoub1.40Å1.44ÅAromatic
CAQHAQsing1.09Å1.10Å
OAAH15sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
OAACAMOAB121.0°120.0°
OAACAMCAP121.5°120.0°
CAMOAAH15109.5°117.0°
OABCAMCAP117.4°120.0°
BRACCANCAD119.4°119.8°
BRACCANCAF118.2°119.8°
CAECADCAN119.8°120.5°
CAECADHAD120.1°119.8°
CADCAECAO120.5°120.0°
CADCAEHAE119.8°120.0°
CANCADHAD120.1°119.8°
CADCANCAF122.3°120.3°
CAOCAEHAE119.8°120.0°
CAECAONAL120.6°120.1°
CAECAOCAP118.5°119.7°
CANCAFCAP119.2°119.9°
CANCAFHAF120.4°120.0°
CAPCAFHAF120.4°120.1°
CAFCAPCAM116.3°120.2°
CAFCAPCAO119.7°119.6°
CAHCAGCAI115.1°109.2°
CAHCAGHAG107.6°109.5°
CAHCAGHAGA107.7°109.5°
CAGCAHNAK109.3°109.5°
CAGCAHHAH109.5°109.5°
CAGCAHHAHA109.5°109.5°
CAICAGHAG107.7°109.5°
CAICAGHAGA107.6°109.5°
CAGCAICAQ113.8°109.2°
CAGCAIHAI108.0°109.5°
CAGCAIHAIA108.1°109.5°
HAGCAGHAGA111.2°109.6°
NAKCAHHAH109.5°109.5°
NAKCAHHAHA109.5°109.5°
CAHNAKCAJ113.2°111.2°
CAHNAKHNAK108.2°111.0°
HAHCAHHAHA109.4°109.4°
CAQCAIHAI108.0°109.6°
CAQCAIHAIA108.0°109.5°
CAICAQCAJ102.8°109.3°
CAICAQNAL105.4°109.5°
CAICAQHAQ116.5°109.5°
HAICAIHAIA110.9°109.6°
NAKCAJCAQ113.7°109.5°
NAKCAJHAJ108.1°109.5°
NAKCAJHAJA108.1°109.4°
CAJNAKHNAK108.3°111.0°
CAQCAJHAJ108.1°109.4°
CAQCAJHAJA108.1°109.5°
CAJCAQNAL110.7°109.5°
CAJCAQHAQ111.7°109.5°
HAJCAJHAJA110.9°109.5°
CAONALCAQ121.8°120.0°
CAONALHNAL105.6°120.0°
NALCAOCAP120.8°120.1°
CAQNALHNAL105.5°120.0°
NALCAQHAQ109.3°109.5°
CAMCAPCAO124.0°120.2°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
OAACAMOABCAP179.3°180.0°
OAACAMCAPCAF25.1°5.8°
OAACAMCAPCAO158.1°174.2°
OABCAMCAPCAF154.1°174.1°
OABCAMCAPCAO22.6°5.9°
OABCAMOAAH150.0°0.0°
BRACCANCADCAE177.4°179.9°
BRACCANCADCAF177.3°180.0°
BRACCANCADHAD2.6°0.2°
BRACCANCAFCAP177.9°180.0°
BRACCANCAFHAF2.2°0.0°
CAECADCANHAD180.0°179.9°
CADCAECAOHAE180.0°179.9°
CAECADCANCAF0.1°0.1°
CADCAECAONAL179.5°180.0°
CADCAECAOCAP3.2°0.1°
CANCADCAECAO1.5°0.1°
CANCADCAEHAE178.5°180.0°
CADCANCAFCAP0.6°0.0°
CADCANCAFHAF179.5°180.0°
HADCADCAECAO178.5°179.8°
HADCADCAEHAE1.5°0.1°
HADCADCANCAF179.9°179.8°
CAECAOCAPCAF3.7°0.0°
CAECAONALCAP177.2°179.9°
CAECAONALCAQ11.1°5.7°
CAECAONALHNAL131.2°174.4°
CAECAOCAPCAM179.7°180.0°
HAECAECAONAL0.4°0.1°
HAECAECAOCAP176.8°180.0°
CANCAFCAPHAF180.0°179.9°
CANCAFCAPCAM179.2°180.0°
CANCAFCAPCAO2.3°0.0°
CAFCAPCAONAL179.1°180.0°
CAFCAPCAMCAO176.8°180.0°
HAFCAFCAPCAM0.8°0.0°
HAFCAFCAPCAO177.7°180.0°
CAHCAGCAIHAG120.0°119.8°
CAHCAGCAIHAGA120.0°120.0°
CAHCAGHAGHAGA117.7°120.1°
CAGCAHNAKHAH120.0°120.0°
CAGCAHNAKHAHA120.0°120.0°
CAGCAHHAHHAHA120.1°119.9°
CAHCAGCAICAQ51.9°57.6°
CAHCAGCAIHAI171.9°177.6°
CAHCAGCAIHAIA68.1°62.3°
CAGCAHNAKCAJ51.5°61.8°
CAGCAHNAKHNAK171.5°174.1°
CAICAGHAGHAGA117.7°120.2°
CAICAGCAHNAK47.5°59.2°
CAICAGCAHHAH72.5°60.9°
CAICAGCAHHAHA167.4°179.2°
CAGCAICAQHAI120.0°119.9°
CAGCAICAQHAIA120.0°119.9°
CAGCAIHAIHAIA118.2°120.1°
CAGCAICAQCAJ54.6°57.7°
CAGCAICAQNAL170.6°177.6°
CAGCAICAQHAQ67.9°62.3°
HAGCAGCAHNAK72.6°60.7°
HAGCAGCAHHAH167.4°179.2°
HAGCAGCAHHAHA47.4°59.3°
HAGCAGCAICAQ68.1°62.2°
HAGCAGCAIHAI51.9°57.7°
HAGCAGCAIHAIA171.9°177.9°
HAGACAGCAHNAK167.5°179.1°
HAGACAGCAHHAH47.5°59.1°
HAGACAGCAHHAHA72.5°60.8°
HAGACAGCAICAQ171.9°177.6°
HAGACAGCAIHAI68.1°62.5°
HAGACAGCAIHAIA51.9°57.7°
NAKCAHHAHHAHA120.1°120.0°
CAHNAKCAJHNAK120.0°124.1°
CAHNAKCAJCAQ63.6°61.7°
CAHNAKCAJHAJ56.4°58.2°
CAHNAKCAJHAJA176.4°178.2°
HAHCAHNAKCAJ68.5°58.3°
HAHCAHNAKHNAK51.5°65.8°
HAHACAHNAKCAJ171.5°178.2°
HAHACAHNAKHNAK68.5°54.1°
CAQCAIHAIHAIA118.2°120.2°
CAICAQCAJNAK59.9°59.2°
CAICAQCAJNAL112.2°120.0°
CAICAQCAJHAQ125.7°120.0°
CAICAQCAJHAJ60.0°60.8°
CAICAQCAJHAJA179.9°179.1°
CAICAQNALCAO172.6°155.0°
CAICAQNALHAQ126.0°120.1°
CAICAQNALHNAL67.4°25.0°
HAICAICAQCAJ174.6°177.5°
HAICAICAQNAL69.4°62.5°
HAICAICAQHAQ52.0°57.5°
HAIACAICAQCAJ65.4°62.2°
HAIACAICAQNAL50.6°57.7°
HAIACAICAQHAQ172.1°177.8°
NAKCAJCAQHAJ120.0°120.0°
NAKCAJCAQHAJA120.0°120.0°
NAKCAJHAJHAJA118.3°120.0°
NAKCAJCAQNAL172.2°179.1°
NAKCAJCAQHAQ65.7°60.8°
CAQCAJHAJHAJA118.3°120.1°
CAQCAJNAKHNAK176.4°174.2°
CAJCAQNALCAO76.9°85.2°
CAJCAQNALHAQ123.5°120.1°
CAJCAQNALHNAL43.1°94.9°
HAJCAJNAKHNAK63.6°65.9°
HAJCAJCAQNAL52.2°59.2°
HAJCAJCAQHAQ174.3°179.2°
HAJACAJNAKHNAK56.4°54.1°
HAJACAJCAQNAL67.9°60.9°
HAJACAJCAQHAQ54.3°59.2°
CAONALCAQHNAL120.0°180.0°
NALCAOCAPCAM2.5°0.0°
CAONALCAQHAQ46.6°34.9°
CAQNALCAOCAP171.7°174.3°
HNALNALCAOCAP51.7°5.7°
HNALNALCAQHAQ166.6°145.1°
CAPCAMOAAH15179.2°180.0°

246905

PDB entries from 2025-12-31

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