AI9

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1P	P	doub	1.48Å	1.63Å
O2P	P	sing	1.61Å	1.66Å
P	O3P	sing	1.61Å	1.65Å
P	O5'	sing	1.61Å	1.63Å
O5'	C5'	sing	1.43Å	1.41Å
C5'	C4'	sing	1.53Å	1.56Å
O3'	C3'	sing	1.43Å	1.44Å
C4'	C3'	sing	1.53Å	1.55Å
C4'	O4'	sing	1.43Å	1.45Å
C3'	C2'	sing	1.53Å	1.54Å
C2'	O2'	sing	1.43Å	1.42Å
C2'	C1'	sing	1.51Å	1.50Å
C1'	N1'	doub	1.30Å	1.27Å
N1'	C6	sing	1.36Å	1.33Å
C6	N1	sing	1.38Å	1.37Å
C6	C5	doub	1.38Å	1.43Å
N5	C5	sing	1.40Å	1.34Å
N1	C2	sing	1.35Å	1.37Å
C5	C4	sing	1.42Å	1.41Å
C2	O2	doub	1.22Å	1.33Å
C2	N3	sing	1.34Å	1.37Å
C4	N3	sing	1.35Å	1.38Å
C4	O4	doub	1.22Å	1.33Å
N3	H1	sing	0.97Å	1.00Å
N5	H2	sing	0.97Å	1.00Å
N5	H3	sing	0.97Å	1.00Å
O2P	H6	sing	0.97Å	0.95Å
O3P	H7	sing	0.97Å	0.95Å
C5'	H8	sing	1.09Å	1.10Å
C5'	H9	sing	1.09Å	1.10Å
C4'	H10	sing	1.09Å	1.10Å
O4'	H11	sing	0.97Å	0.95Å
C3'	H12	sing	1.09Å	1.10Å
O3'	H13	sing	0.97Å	0.95Å
C2'	H14	sing	1.09Å	1.10Å
O2'	H15	sing	0.97Å	0.95Å
C1'	H16	sing	1.08Å	1.08Å
N1	H4	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1P	P	O2P	107.0°	109.5°
O1P	P	O3P	109.7°	109.5°
O1P	P	O5'	116.1°	109.4°
O2P	P	O3P	107.8°	109.5°
O2P	P	O5'	107.7°	109.5°
P	O2P	H6	109.5°	114.1°
O3P	P	O5'	108.3°	109.5°
P	O3P	H7	109.5°	114.0°
P	O5'	C5'	118.3°	123.0°
O5'	C5'	C4'	109.2°	109.5°
O5'	C5'	H8	109.6°	109.5°
O5'	C5'	H9	109.5°	109.4°
C5'	C4'	C3'	111.0°	109.5°
C5'	C4'	O4'	104.8°	109.5°
C4'	C5'	H8	109.5°	109.5°
C4'	C5'	H9	109.5°	109.5°
C5'	C4'	H10	109.0°	109.5°
O3'	C3'	C4'	105.2°	109.5°
O3'	C3'	C2'	104.9°	109.5°
O3'	C3'	H12	111.1°	109.5°
C3'	O3'	H13	109.5°	114.0°
C3'	C4'	O4'	112.3°	109.5°
C4'	C3'	C2'	116.2°	109.5°
C3'	C4'	H10	109.2°	109.5°
C4'	C3'	H12	109.6°	109.5°
O4'	C4'	H10	110.5°	109.4°
C4'	O4'	H11	109.5°	114.0°
C3'	C2'	O2'	112.4°	109.5°
C3'	C2'	C1'	114.0°	109.5°
C2'	C3'	H12	109.7°	109.4°
C3'	C2'	H14	106.4°	109.4°
O2'	C2'	C1'	108.8°	109.5°
O2'	C2'	H14	107.9°	109.5°
C2'	O2'	H15	109.5°	114.0°
C2'	C1'	N1'	118.7°	120.0°
C1'	C2'	H14	106.9°	109.5°
C2'	C1'	H16	120.6°	120.0°
C1'	N1'	C6	125.9°	120.0°
N1'	C1'	H16	120.7°	120.0°
N1'	C6	N1	123.2°	120.4°
N1'	C6	C5	117.7°	120.4°
N1	C6	C5	119.1°	119.2°
C6	N1	C2	121.5°	120.4°
C6	N1	H4	119.3°	119.8°
C6	C5	N5	118.4°	120.6°
C6	C5	C4	118.7°	118.7°
N5	C5	C4	122.9°	120.6°
C5	N5	H2	109.5°	120.0°
C5	N5	H3	109.4°	120.0°
N1	C2	O2	119.9°	119.3°
N1	C2	N3	120.3°	121.3°
C2	N1	H4	119.3°	119.8°
C5	C4	N3	118.9°	119.5°
C5	C4	O4	120.9°	120.3°
O2	C2	N3	119.9°	119.4°
C2	N3	C4	121.5°	120.9°
C2	N3	H1	119.2°	119.5°
N3	C4	O4	120.2°	120.2°
C4	N3	H1	119.3°	119.6°
H2	N5	H3	109.5°	120.0°
H8	C5'	H9	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1P	P	O2P	O3P	117.9°	120.0°
O1P	P	O2P	O5'	125.5°	120.0°
O1P	P	O3P	O5'	127.6°	120.0°
O1P	P	O5'	C5'	24.3°	55.0°
O1P	P	O2P	H6	0.0°	180.0°
O1P	P	O3P	H7	0.0°	60.1°
O2P	P	O3P	O5'	116.3°	120.0°
O2P	P	O5'	C5'	144.2°	65.0°
O2P	P	O3P	H7	116.1°	60.0°
O3P	P	O5'	C5'	99.5°	175.0°
O3P	P	O2P	H6	117.8°	60.0°
P	O5'	C5'	C4'	177.1°	180.0°
O5'	P	O2P	H6	125.5°	60.0°
O5'	P	O3P	H7	127.6°	180.0°
P	O5'	C5'	H8	62.9°	60.0°
P	O5'	C5'	H9	57.2°	60.0°
O5'	C5'	C4'	H8	120.0°	120.0°
O5'	C5'	C4'	H9	119.9°	120.0°
O5'	C5'	C4'	C3'	178.0°	175.0°
O5'	C5'	C4'	O4'	60.7°	65.0°
O5'	C5'	H8	H9	120.2°	120.0°
O5'	C5'	C4'	H10	57.7°	55.0°
C5'	C4'	C3'	O3'	62.9°	60.0°
C5'	C4'	C3'	O4'	116.9°	120.0°
C5'	C4'	C3'	H10	120.2°	120.0°
C5'	C4'	O4'	H10	117.3°	120.0°
C5'	C4'	C3'	C2'	178.4°	180.0°
C4'	C5'	H8	H9	120.1°	120.0°
C5'	C4'	O4'	H11	180.0°	60.1°
C5'	C4'	C3'	H12	56.6°	60.0°
O3'	C3'	C4'	C2'	115.5°	120.0°
O3'	C3'	C4'	H12	119.5°	120.0°
O3'	C3'	C4'	O4'	179.8°	180.0°
O3'	C3'	C2'	H12	119.4°	120.0°
O3'	C3'	C2'	O2'	58.0°	180.0°
O3'	C3'	C2'	C1'	177.6°	60.0°
O3'	C3'	C4'	H10	57.3°	60.0°
O3'	C3'	C2'	H14	59.9°	60.0°
C3'	C4'	O4'	H10	122.2°	120.0°
C4'	C3'	C2'	H12	124.9°	120.0°
C4'	C3'	C2'	O2'	57.7°	60.0°
C4'	C3'	C2'	C1'	66.7°	180.0°
C3'	C4'	C5'	H8	62.1°	65.0°
C3'	C4'	C5'	H9	58.0°	55.0°
C3'	C4'	O4'	H11	59.5°	59.9°
C4'	C3'	O3'	H13	180.0°	60.0°
C4'	C3'	C2'	H14	175.6°	60.0°
O4'	C4'	C3'	C2'	64.7°	60.0°
O4'	C4'	C5'	H8	59.3°	55.0°
O4'	C4'	C5'	H9	179.4°	175.0°
O4'	C4'	C3'	H12	60.3°	60.0°
C3'	C2'	O2'	C1'	127.3°	120.0°
C3'	C2'	O2'	H14	117.0°	120.0°
C3'	C2'	C1'	H14	117.4°	119.9°
C3'	C2'	C1'	N1'	80.9°	120.0°
C2'	C3'	C4'	H10	58.2°	60.0°
C2'	C3'	O3'	H13	56.9°	60.0°
C3'	C2'	O2'	H15	180.0°	60.1°
C3'	C2'	C1'	H16	99.1°	60.0°
O2'	C2'	C1'	H14	116.3°	120.0°
O2'	C2'	C1'	N1'	152.8°	0.0°
O2'	C2'	C3'	H12	177.4°	60.0°
O2'	C2'	C1'	H16	27.2°	180.0°
C2'	C1'	N1'	H16	180.0°	180.0°
C2'	C1'	N1'	C6	150.9°	174.8°
C1'	C2'	C3'	H12	58.2°	60.0°
C1'	C2'	O2'	H15	52.8°	60.0°
C1'	N1'	C6	N1	1.7°	5.7°
C1'	N1'	C6	C5	178.2°	174.6°
N1'	C1'	C2'	H14	36.5°	120.0°
N1'	C6	N1	C5	179.9°	179.7°
N1'	C6	C5	N5	0.1°	0.4°
N1'	C6	N1	C2	179.8°	180.0°
N1'	C6	C5	C4	179.8°	180.0°
C6	N1'	C1'	H16	29.1°	5.2°
N1'	C6	N1	H4	0.2°	0.0°
N1	C6	C5	N5	180.0°	180.0°
C6	N1	C2	H4	180.0°	180.0°
N1	C6	C5	C4	0.1°	0.3°
C6	N1	C2	O2	179.9°	180.0°
C6	N1	C2	N3	0.0°	0.0°
C6	C5	N5	C4	179.9°	179.6°
C5	C6	N1	C2	0.1°	0.3°
C6	C5	C4	N3	0.0°	0.0°
C6	C5	C4	O4	179.9°	179.9°
C6	C5	N5	H2	180.0°	5.1°
C6	C5	N5	H3	60.0°	174.9°
C5	C6	N1	H4	179.9°	179.7°
N5	C5	C4	N3	179.9°	179.7°
N5	C5	C4	O4	0.0°	0.3°
C5	N5	H2	H3	120.0°	179.9°
N1	C2	O2	N3	179.9°	180.0°
N1	C2	N3	C4	0.1°	0.4°
N1	C2	N3	H1	179.9°	180.0°
C5	C4	N3	C2	0.1°	0.3°
C5	C4	N3	O4	179.9°	179.9°
C5	C4	N3	H1	179.9°	180.0°
C4	C5	N5	H2	0.1°	175.2°
C4	C5	N5	H3	120.1°	4.7°
O2	C2	N3	C4	180.0°	179.7°
O2	C2	N3	H1	0.0°	0.1°
O2	C2	N1	H4	0.1°	0.0°
C2	N3	C4	H1	180.0°	179.6°
C2	N3	C4	O4	180.0°	179.8°
N3	C2	N1	H4	180.0°	180.0°
O4	C4	N3	H1	0.1°	0.1°
H8	C5'	C4'	H10	177.6°	175.0°
H9	C5'	C4'	H10	62.3°	65.0°
H10	C4'	O4'	H11	62.7°	180.0°
H10	C4'	C3'	H12	176.8°	180.0°
H12	C3'	O3'	H13	61.6°	180.0°
H12	C3'	C2'	H14	59.5°	180.0°
H14	C2'	O2'	H15	62.9°	180.0°
H14	C2'	C1'	H16	143.5°	60.0°

Release date:	2013-02-15
Definition date:	2012-10-05
Last modified:	2013-02-15
Release status:	REL
Processing site:	PDBJ
Derived from:	4G3M