AHY
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C10 | C9 | sing | 1.52Å | 1.54Å | |
C10 | H101 | sing | 1.09Å | 1.11Å | |
C10 | H102 | sing | 1.09Å | 1.12Å | |
C10 | H103 | sing | 1.09Å | 1.11Å | |
C9 | C8 | sing | 1.53Å | 1.55Å | |
C9 | H9C1 | sing | 1.10Å | 1.12Å | |
C9 | H9C2 | sing | 1.10Å | 1.11Å | |
C8 | C7 | sing | 1.53Å | 1.55Å | |
C8 | H8C1 | sing | 1.10Å | 1.12Å | |
C8 | H8C2 | sing | 1.10Å | 1.12Å | |
C7 | C6 | sing | 1.53Å | 1.55Å | |
C7 | H7C1 | sing | 1.10Å | 1.12Å | |
C7 | H7C2 | sing | 1.10Å | 1.12Å | |
C6 | C5 | sing | 1.53Å | 1.54Å | |
C6 | H6C1 | sing | 1.10Å | 1.11Å | |
C6 | H6C2 | sing | 1.10Å | 1.11Å | |
C5 | C4 | sing | 1.53Å | 1.51Å | |
C5 | H5C1 | sing | 1.10Å | 1.12Å | |
C5 | H5C2 | sing | 1.10Å | 1.12Å | |
C4 | C3 | sing | 1.54Å | 1.55Å | |
C4 | H4C1 | sing | 1.10Å | 1.12Å | |
C4 | H4C2 | sing | 1.10Å | 1.11Å | |
C3 | H3 | sing | 1.10Å | 1.12Å | |
C3 | N3 | sing | 1.47Å | 1.51Å | |
C3 | C2 | sing | 1.54Å | 1.53Å | |
N3 | H3N1 | sing | 0.99Å | 1.02Å | |
N3 | H3N2 | sing | 0.99Å | 1.02Å | |
C2 | H2 | sing | 1.10Å | 1.10Å | |
C2 | OH2 | sing | 1.42Å | 1.41Å | |
C2 | C1 | sing | 1.52Å | 1.53Å | |
OH2 | H2O | sing | 0.97Å | 0.95Å | |
C1 | O | doub | 1.22Å | 1.22Å | |
C1 | OXT | sing | 1.36Å | 1.31Å | |
OXT | HXT | sing | 0.98Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C9 | C10 | H101 | 110.5° | 111.0° |
C9 | C10 | H102 | 110.4° | 111.0° |
C9 | C10 | H103 | 114.3° | 110.3° |
C10 | C9 | C8 | 114.3° | 111.5° |
C10 | C9 | H9C1 | 110.4° | 109.2° |
C10 | C9 | H9C2 | 110.5° | 109.1° |
H101 | C10 | H102 | 99.8° | 108.3° |
H101 | C10 | H103 | 110.5° | 108.0° |
H102 | C10 | H103 | 110.5° | 108.1° |
C8 | C9 | H9C1 | 110.5° | 109.8° |
C8 | C9 | H9C2 | 110.5° | 109.9° |
C9 | C8 | C7 | 112.3° | 111.3° |
C9 | C8 | H8C1 | 111.2° | 109.6° |
C9 | C8 | H8C2 | 111.2° | 109.5° |
H9C1 | C9 | H9C2 | 99.8° | 107.3° |
C7 | C8 | H8C1 | 111.2° | 109.6° |
C7 | C8 | H8C2 | 111.2° | 109.6° |
C8 | C7 | C6 | 110.2° | 111.2° |
C8 | C7 | H7C1 | 111.9° | 108.9° |
C8 | C7 | H7C2 | 112.0° | 109.6° |
H8C1 | C8 | H8C2 | 99.1° | 107.2° |
C6 | C7 | H7C1 | 111.9° | 110.2° |
C6 | C7 | H7C2 | 111.9° | 109.6° |
C7 | C6 | C5 | 110.0° | 113.5° |
C7 | C6 | H6C1 | 112.0° | 108.8° |
C7 | C6 | H6C2 | 112.0° | 109.9° |
H7C1 | C7 | H7C2 | 98.4° | 107.3° |
C5 | C6 | H6C1 | 112.0° | 108.0° |
C5 | C6 | H6C2 | 112.0° | 109.7° |
C6 | C5 | C4 | 111.4° | 113.2° |
C6 | C5 | H5C1 | 111.5° | 109.3° |
C6 | C5 | H5C2 | 111.5° | 107.1° |
H6C1 | C6 | H6C2 | 98.4° | 106.7° |
C4 | C5 | H5C1 | 111.5° | 110.6° |
C4 | C5 | H5C2 | 111.5° | 109.3° |
C5 | C4 | C3 | 111.9° | 116.1° |
C5 | C4 | H4C1 | 111.3° | 109.4° |
C5 | C4 | H4C2 | 111.3° | 108.8° |
H5C1 | C5 | H5C2 | 98.9° | 107.1° |
C3 | C4 | H4C1 | 111.3° | 107.7° |
C3 | C4 | H4C2 | 111.3° | 108.5° |
C4 | C3 | H3 | 108.5° | 106.1° |
C4 | C3 | N3 | 110.5° | 110.3° |
C4 | C3 | C2 | 108.5° | 113.7° |
H4C1 | C4 | H4C2 | 99.1° | 105.9° |
H3 | C3 | N3 | 110.5° | 107.0° |
H3 | C3 | C2 | 112.4° | 108.5° |
N3 | C3 | C2 | 106.4° | 111.0° |
C3 | N3 | H3N1 | 111.8° | 117.8° |
C3 | N3 | H3N2 | 110.5° | 117.7° |
C3 | C2 | H2 | 104.4° | 110.6° |
C3 | C2 | OH2 | 111.1° | 110.8° |
C3 | C2 | C1 | 112.4° | 112.0° |
H3N1 | N3 | H3N2 | 111.8° | 123.0° |
H2 | C2 | OH2 | 114.0° | 107.3° |
H2 | C2 | C1 | 112.8° | 108.1° |
OH2 | C2 | C1 | 102.4° | 107.7° |
C2 | OH2 | H2O | 109.5° | 106.8° |
C2 | C1 | O | 120.2° | 124.7° |
C2 | C1 | OXT | 113.8° | 112.3° |
O | C1 | OXT | 126.0° | 123.0° |
C1 | OXT | HXT | 109.5° | 115.2° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C9 | C10 | H101 | H102 | 116.3° | 122.1° |
C9 | C10 | H101 | H103 | 127.4° | 121.1° |
C9 | C10 | H102 | H103 | 127.4° | 121.1° |
C10 | C9 | C8 | H9C1 | 125.3° | 121.1° |
C10 | C9 | C8 | H9C2 | 125.3° | 121.1° |
C10 | C9 | H9C1 | H9C2 | 116.3° | 118.1° |
C10 | C9 | C8 | C7 | 67.9° | 178.6° |
C10 | C9 | C8 | H8C1 | 57.4° | 60.0° |
C10 | C9 | C8 | H8C2 | 166.9° | 57.3° |
H101 | C10 | H102 | H103 | 116.3° | 116.8° |
H101 | C10 | C9 | C8 | 54.7° | 60.3° |
H101 | C10 | C9 | H9C1 | 70.5° | 61.2° |
H101 | C10 | C9 | H9C2 | 180.0° | 178.2° |
H102 | C10 | C9 | C8 | 54.7° | 60.2° |
H102 | C10 | C9 | H9C1 | 180.0° | 178.3° |
H102 | C10 | C9 | H9C2 | 70.5° | 61.3° |
H103 | C10 | C9 | C8 | 180.0° | 180.0° |
H103 | C10 | C9 | H9C1 | 54.8° | 58.5° |
H103 | C10 | C9 | H9C2 | 54.7° | 58.5° |
C8 | C9 | H9C1 | H9C2 | 116.3° | 119.4° |
C9 | C8 | C7 | H8C1 | 125.3° | 121.4° |
C9 | C8 | C7 | H8C2 | 125.3° | 121.3° |
C9 | C8 | H8C1 | H8C2 | 117.0° | 118.8° |
C9 | C8 | C7 | C6 | 156.5° | 178.4° |
C9 | C8 | C7 | H7C1 | 31.3° | 60.1° |
C9 | C8 | C7 | H7C2 | 78.2° | 57.1° |
H9C1 | C9 | C8 | C7 | 166.9° | 57.5° |
H9C1 | C9 | C8 | H8C1 | 67.8° | 178.9° |
H9C1 | C9 | C8 | H8C2 | 41.6° | 63.8° |
H9C2 | C9 | C8 | C7 | 57.4° | 60.3° |
H9C2 | C9 | C8 | H8C1 | 177.3° | 61.1° |
H9C2 | C9 | C8 | H8C2 | 67.9° | 178.4° |
C7 | C8 | H8C1 | H8C2 | 117.0° | 118.8° |
C8 | C7 | C6 | H7C1 | 125.3° | 120.9° |
C8 | C7 | C6 | H7C2 | 125.3° | 121.3° |
C8 | C7 | H7C1 | H7C2 | 117.9° | 118.5° |
C8 | C7 | C6 | C5 | 179.5° | 179.7° |
C8 | C7 | C6 | H6C1 | 55.3° | 60.0° |
C8 | C7 | C6 | H6C2 | 54.2° | 56.5° |
H8C1 | C8 | C7 | C6 | 78.2° | 60.3° |
H8C1 | C8 | C7 | H7C1 | 156.5° | 61.3° |
H8C1 | C8 | C7 | H7C2 | 47.1° | 178.4° |
H8C2 | C8 | C7 | C6 | 31.3° | 57.1° |
H8C2 | C8 | C7 | H7C1 | 94.0° | 178.7° |
H8C2 | C8 | C7 | H7C2 | 156.5° | 64.2° |
C6 | C7 | H7C1 | H7C2 | 117.9° | 119.2° |
C7 | C6 | C5 | H6C1 | 125.2° | 120.8° |
C7 | C6 | C5 | H6C2 | 125.3° | 123.3° |
C7 | C6 | H6C1 | H6C2 | 117.9° | 118.5° |
C7 | C6 | C5 | C4 | 172.7° | 176.2° |
C7 | C6 | C5 | H5C1 | 47.4° | 60.0° |
C7 | C6 | C5 | H5C2 | 62.1° | 55.7° |
H7C1 | C7 | C6 | C5 | 54.2° | 58.8° |
H7C1 | C7 | C6 | H6C1 | 179.5° | 179.1° |
H7C1 | C7 | C6 | H6C2 | 71.0° | 64.4° |
H7C2 | C7 | C6 | C5 | 55.2° | 59.0° |
H7C2 | C7 | C6 | H6C1 | 70.0° | 61.3° |
H7C2 | C7 | C6 | H6C2 | 179.5° | 177.8° |
C5 | C6 | H6C1 | H6C2 | 117.9° | 117.8° |
C6 | C5 | C4 | H5C1 | 125.3° | 123.0° |
C6 | C5 | C4 | H5C2 | 125.3° | 119.3° |
C6 | C5 | H5C1 | H5C2 | 117.4° | 115.7° |
C6 | C5 | C4 | C3 | 167.7° | 177.9° |
C6 | C5 | C4 | H4C1 | 42.4° | 60.0° |
C6 | C5 | C4 | H4C2 | 67.1° | 55.3° |
H6C1 | C6 | C5 | C4 | 62.1° | 55.4° |
H6C1 | C6 | C5 | H5C1 | 172.7° | 179.2° |
H6C1 | C6 | C5 | H5C2 | 63.2° | 65.1° |
H6C2 | C6 | C5 | C4 | 47.4° | 60.5° |
H6C2 | C6 | C5 | H5C1 | 77.8° | 63.3° |
H6C2 | C6 | C5 | H5C2 | 172.7° | 179.0° |
C4 | C5 | H5C1 | H5C2 | 117.4° | 119.0° |
C5 | C4 | C3 | H4C1 | 125.3° | 123.0° |
C5 | C4 | C3 | H4C2 | 125.2° | 122.8° |
C5 | C4 | H4C1 | H4C2 | 117.2° | 117.1° |
C5 | C4 | C3 | H3 | 55.2° | 60.0° |
C5 | C4 | C3 | N3 | 66.1° | 55.5° |
C5 | C4 | C3 | C2 | 177.6° | 179.2° |
H5C1 | C5 | C4 | C3 | 67.0° | 59.1° |
H5C1 | C5 | C4 | H4C1 | 167.7° | 63.0° |
H5C1 | C5 | C4 | H4C2 | 58.2° | 178.3° |
H5C2 | C5 | C4 | C3 | 42.4° | 58.6° |
H5C2 | C5 | C4 | H4C1 | 82.8° | 179.3° |
H5C2 | C5 | C4 | H4C2 | 167.7° | 64.0° |
C3 | C4 | H4C1 | H4C2 | 117.2° | 115.9° |
C4 | C3 | H3 | N3 | 121.3° | 117.7° |
C4 | C3 | H3 | C2 | 120.0° | 122.5° |
C4 | C3 | N3 | C2 | 117.6° | 126.8° |
C4 | C3 | N3 | H3N1 | 54.8° | 44.2° |
C4 | C3 | N3 | H3N2 | 180.0° | 122.3° |
C4 | C3 | C2 | H2 | 49.7° | 63.0° |
C4 | C3 | C2 | OH2 | 173.1° | 178.1° |
C4 | C3 | C2 | C1 | 72.8° | 57.8° |
H4C1 | C4 | C3 | H3 | 70.1° | 177.0° |
H4C1 | C4 | C3 | N3 | 168.7° | 67.5° |
H4C1 | C4 | C3 | C2 | 52.3° | 57.8° |
H4C2 | C4 | C3 | H3 | 179.5° | 62.8° |
H4C2 | C4 | C3 | N3 | 59.2° | 178.3° |
H4C2 | C4 | C3 | C2 | 57.2° | 56.4° |
H3 | C3 | N3 | C2 | 122.3° | 118.2° |
H3 | C3 | N3 | H3N1 | 174.9° | 159.1° |
H3 | C3 | N3 | H3N2 | 59.9° | 7.4° |
H3 | C3 | C2 | H2 | 169.7° | 179.3° |
H3 | C3 | C2 | OH2 | 67.0° | 60.3° |
H3 | C3 | C2 | C1 | 47.2° | 60.0° |
C3 | N3 | H3N1 | H3N2 | 124.5° | 165.8° |
N3 | C3 | C2 | H2 | 69.2° | 62.0° |
N3 | C3 | C2 | OH2 | 54.1° | 57.0° |
N3 | C3 | C2 | C1 | 168.2° | 177.3° |
C2 | C3 | N3 | H3N1 | 62.9° | 82.6° |
C2 | C3 | N3 | H3N2 | 62.4° | 110.8° |
C3 | C2 | H2 | OH2 | 121.4° | 121.0° |
C3 | C2 | H2 | C1 | 122.3° | 123.0° |
C3 | C2 | OH2 | C1 | 120.2° | 122.9° |
C3 | C2 | OH2 | H2O | 106.1° | 35.9° |
C3 | C2 | C1 | O | 43.1° | 87.7° |
C3 | C2 | C1 | OXT | 137.4° | 91.2° |
H2 | C2 | OH2 | C1 | 122.2° | 116.2° |
H2 | C2 | OH2 | H2O | 11.6° | 85.0° |
H2 | C2 | C1 | O | 160.8° | 150.1° |
H2 | C2 | C1 | OXT | 19.7° | 31.0° |
OH2 | C2 | C1 | O | 76.2° | 34.4° |
OH2 | C2 | C1 | OXT | 103.3° | 146.7° |
C1 | C2 | OH2 | H2O | 133.7° | 158.8° |
C2 | C1 | O | OXT | 179.4° | 178.8° |
C2 | C1 | OXT | HXT | 179.5° | 179.1° |
O | C1 | OXT | HXT | 0.0° | 0.1° |