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AH5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
MOOT1doub1.66Å1.68Å
MOS8'sing2.29Å2.48Å
MOOT2doub1.66Å1.71Å
MOS7'sing2.29Å2.46Å
N1C6sing1.37Å1.35Å
N1C2sing1.40Å1.42Å
N1C1'sing1.50Å1.47Å
C2N3sing1.35Å1.39Å
C2O2doub1.24Å1.25Å
N3C4doub1.34Å1.32Å
C4N4sing1.33Å1.36Å
C4C5sing1.42Å1.47Å
C5C6doub1.34Å1.37Å
C1'C2Dsing1.54Å1.55Å
C1'O4Dsing1.41Å1.44Å
C2DO2'sing1.42Å1.42Å
C2DC3'sing1.54Å1.51Å
C3'C4Dsing1.54Å1.52Å
C3'O3'sing1.42Å1.44Å
C4DC5'sing1.51Å1.50Å
C4DO4Dsing1.44Å1.46Å
C5'O5'sing1.45Å1.57Å
O5'PAsing1.59Å1.57Å
PAO2Adoub1.48Å1.58Å
PAO1Asing1.52Å1.51Å
PAO3Asing1.60Å1.62Å
O3APBsing1.59Å1.61Å
PBO2Bdoub1.48Å1.52Å
PBO1Bsing1.52Å1.45Å
PBO3Bsing1.58Å1.63Å
O3BC10sing1.44Å1.47Å
C10C9'sing1.53Å1.52Å
C9'C8'sing1.52Å1.47Å
C9'O9'sing1.44Å1.46Å
C8'S8'sing1.68Å1.68Å
C8'C7'doub1.35Å1.32Å
C7'S7'sing1.67Å1.69Å
C7'C6'sing1.53Å1.52Å
C6'C7sing1.56Å1.52Å
C6'N5'sing1.46Å1.48Å
C7O9'sing1.44Å1.42Å
C7N8'sing1.46Å1.41Å
N5'C4Asing1.39Å1.43Å
C4AC4'sing1.44Å1.46Å
C4AC4Bdoub1.41Å1.41Å
N8'C4Bsing1.36Å1.34Å
C4BN1'sing1.36Å1.36Å
N1'C2'doub1.34Å1.41Å
C2'N3'sing1.37Å1.44Å
C2'N2'sing1.33Å1.35Å
N3'C4'sing1.39Å1.36Å
C4'O4'doub1.23Å1.28Å
C5H3sing0.94Å1.08Å
C6H4sing0.94Å1.08Å
N4H5sing0.88Å1.00Å
N4H6sing0.88Å1.00Å
C1'H7sing0.99Å1.10Å
C2DH8sing0.98Å1.10Å
O2'H9sing0.84Å0.95Å
C3'H10sing0.99Å1.10Å
C4DH11sing0.99Å1.10Å
O3'H12sing0.84Å0.95Å
C5'H13sing0.99Å1.10Å
C5'H14sing0.99Å1.10Å
O1AH15sing0.89Å0.95Å
O1BH16sing0.89Å0.95Å
C10H17sing0.98Å1.10Å
C10H18sing0.98Å1.10Å
C9'H19sing0.99Å1.10Å
C6'H20sing0.99Å1.10Å
C7H21sing0.99Å1.10Å
N5'H22sing0.87Å1.00Å
N8'H25sing0.88Å1.00Å
N2'H26sing0.88Å1.00Å
N2'H27sing0.88Å1.00Å
H1N3'sing0.88Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OT1MOS8'94.6°90.0°
OT1MOOT2104.4°90.0°
OT1MOS7'97.8°90.0°
S8'MOOT2160.2°176.4°
S8'MOS7'82.4°82.9°
MOS8'C8'103.2°108.2°
OT2MOS7'89.7°93.6°
MOS7'C7'103.4°108.0°
C6N1C2121.7°119.5°
C6N1C1'120.9°122.3°
N1C6C5122.9°121.8°
N1C6H4118.5°118.9°
C2N1C1'117.3°118.2°
N1C2N3116.3°119.1°
N1C2O2121.7°119.8°
N1C1'C2D112.5°113.4°
N1C1'O4D108.1°109.4°
N1C1'H7111.1°109.5°
N3C2O2121.9°121.1°
C2N3C4122.5°120.9°
N3C4N4124.4°118.1°
N3C4C5121.7°120.8°
N4C4C5113.9°121.1°
C4N4H5120.0°120.0°
C4N4H6120.0°120.6°
C4C5C6114.8°117.9°
C4C5H3122.6°121.2°
C6C5H3122.6°121.0°
C5C6H4118.6°119.2°
C2DC1'O4D103.5°108.5°
C1'C2DO2'110.7°109.5°
C1'C2DC3'103.3°102.6°
C2DC1'H7109.9°108.0°
C1'C2DH8109.4°110.0°
C1'O4DC4D110.1°110.3°
O4DC1'H7111.6°107.9°
O2'C2DC3'112.0°114.5°
O2'C2DH8111.3°110.0°
C2DO2'H9109.5°110.9°
C2DC3'C4D102.9°103.1°
C2DC3'O3'109.7°112.0°
C3'C2DH8109.9°109.9°
C2DC3'H10112.0°109.2°
C4DC3'O3'106.5°111.4°
C3'C4DC5'112.0°116.4°
C3'C4DO4D107.1°104.6°
C4DC3'H10111.9°111.1°
C3'C4DH11108.6°109.3°
O3'C3'H10113.2°109.9°
C3'O3'H12109.5°110.8°
C5'C4DO4D110.8°109.8°
C4DC5'O5'108.1°109.8°
C5'C4DH11108.9°107.8°
C4DC5'H13109.8°109.4°
C4DC5'H14109.8°109.8°
O4DC4DH11109.4°108.8°
C5'O5'PA120.6°123.6°
O5'C5'H13109.8°109.7°
O5'C5'H14109.8°109.9°
O5'PAO2A108.3°114.5°
O5'PAO1A109.9°108.7°
O5'PAO3A106.6°105.0°
O2APAO1A114.2°113.6°
O2APAO3A112.1°109.0°
O1APAO3A105.5°105.2°
PAO1AH15109.5°113.3°
PAO3APB132.7°132.6°
O3APBO2B105.0°109.4°
O3APBO1B112.5°105.0°
O3APBO3B97.6°104.4°
O2BPBO1B122.0°113.8°
O2BPBO3B111.5°115.6°
O1BPBO3B105.6°107.7°
PBO1BH16109.5°113.2°
PBO3BC10119.2°123.3°
O3BC10C9'111.9°109.7°
O3BC10H17108.9°110.1°
O3BC10H18108.9°110.1°
C10C9'C8'105.1°113.0°
C10C9'O9'110.0°105.0°
C9'C10H17108.9°109.6°
C9'C10H18108.9°109.3°
C10C9'H19108.9°108.2°
C8'C9'O9'113.5°114.4°
C9'C8'S8'113.8°119.1°
C9'C8'C7'121.6°121.6°
C8'C9'H19109.5°107.1°
C9'O9'C7113.8°122.8°
O9'C9'H19109.7°108.9°
S8'C8'C7'124.5°119.3°
C8'C7'S7'125.3°120.7°
C8'C7'C6'124.4°122.3°
S7'C7'C6'110.0°116.9°
C7'C6'C7108.3°111.6°
C7'C6'N5'110.3°111.2°
C7'C6'H20110.2°107.5°
C7C6'N5'107.1°112.1°
C6'C7O9'114.3°112.2°
C6'C7N8'118.9°112.0°
C7C6'H20110.2°106.4°
C6'C7H21103.9°108.9°
C6'N5'C4A113.7°122.4°
N5'C6'H20110.7°107.9°
C6'N5'H22108.4°119.6°
O9'C7N8'108.4°107.2°
O9'C7H21104.9°108.7°
C7N8'C4B114.2°122.6°
N8'C7H21105.0°107.8°
C7N8'H25108.3°119.1°
N5'C4AC4'122.4°121.5°
N5'C4AC4B120.2°119.4°
C4AN5'H22108.4°118.0°
C4'C4AC4B117.4°119.2°
C4AC4'N3'120.8°115.0°
C4AC4'O4'121.8°125.3°
C4AC4BN8'124.6°120.9°
C4AC4BN1'121.3°122.4°
N8'C4BN1'114.1°116.7°
C4BN8'H25108.3°118.3°
C4BN1'C2'121.9°118.0°
N1'C2'N3'117.7°123.0°
N1'C2'N2'124.2°119.1°
N3'C2'N2'118.1°117.8°
C2'N3'C4'120.9°122.4°
C2'N3'H1119.6°119.1°
C2'N2'H26120.0°120.1°
C2'N2'H27120.0°120.6°
N3'C4'O4'117.4°119.7°
C4'N3'H1119.6°118.4°
H5N4H6120.0°119.4°
H13C5'H14109.5°108.2°
H17C10H18109.5°108.0°
H26N2'H27120.0°119.3°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OT1MOS8'OT2164.2°90.1°
OT1MOS8'S7'97.2°90.0°
OT1MOOT2S7'97.9°90.0°
OT1MOS8'C8'88.5°81.8°
OT1MOS7'C7'85.7°84.2°
S8'MOOT2S7'65.8°0.1°
MOS8'C8'C9'172.5°170.2°
MOS8'C8'C7'9.0°10.3°
S8'MOS7'C7'8.0°5.8°
OT2MOS8'C8'75.7°8.3°
OT2MOS7'C7'169.8°174.2°
S7'MOS8'C8'8.7°8.2°
MOS7'C7'C8'6.3°1.7°
MOS7'C7'C6'179.8°179.8°
C6N1C2C1'179.8°179.4°
C6N1C2N30.0°0.4°
C6N1C2O2180.0°179.7°
N1C6C5C40.1°0.2°
N1C6C5H4180.0°179.9°
C6N1C1'C2D64.8°86.9°
C6N1C1'O4D48.9°34.3°
N1C6C5H3179.9°179.8°
C6N1C1'H7171.6°152.3°
N1C2N3O2180.0°179.9°
N1C2N3C40.1°0.2°
C2N1C6C50.0°0.4°
C2N1C1'C2D115.5°92.5°
C2N1C1'O4D130.9°146.3°
C2N1C6H4180.0°179.6°
C2N1C1'H78.2°28.3°
C1'N1C2N3179.8°179.8°
C1'N1C2O20.2°0.3°
C1'N1C6C5179.8°179.8°
N1C1'C2DO4D116.4°121.7°
N1C1'C2DH7124.3°121.6°
N1C1'O4DH7122.4°119.0°
N1C1'C2DO2'88.5°131.4°
N1C1'C2DC3'151.5°106.5°
N1C1'O4DC4D141.8°129.9°
C1'N1C6H40.3°0.3°
N1C1'C2DH834.4°10.4°
C2N3C4N4179.8°180.0°
C2N3C4C50.2°0.1°
O2C2N3C4179.9°179.9°
N3C4N4C5180.0°180.0°
N3C4C5C60.2°0.0°
N3C4C5H3179.9°180.0°
N3C4N4H50.0°0.0°
N3C4N4H6180.0°180.0°
N4C4C5C6179.8°180.0°
N4C4C5H30.1°0.0°
C4N4H5H6180.0°179.9°
C4C5C6H3180.0°180.0°
C4C5C6H4179.9°179.8°
C5C4N4H5180.0°179.9°
C5C4N4H60.0°0.0°
C2DC1'O4DH7118.1°116.8°
C1'C2DO2'C3'114.7°114.6°
C1'C2DO2'H8121.9°121.0°
C1'C2DC3'H8116.7°117.0°
C1'C2DC3'C4D33.9°28.7°
C1'C2DC3'O3'79.1°148.5°
C2DC1'O4DC4D22.3°5.7°
C1'C2DO2'H9180.0°172.3°
C1'C2DC3'H10154.3°89.5°
O4DC1'C2DO2'155.0°106.8°
O4DC1'C2DC3'35.0°15.2°
C1'O4DC4DC3'1.0°24.4°
C1'O4DC4DC5'123.4°150.0°
O4DC1'C2DH882.0°132.1°
C1'O4DC4DH11116.6°92.2°
O2'C2DC3'H8124.2°124.4°
O2'C2DC3'C4D153.1°89.9°
O2'C2DC3'O3'40.1°29.9°
O2'C2DC1'H735.8°9.9°
O2'C2DC3'H1086.5°151.9°
C2DC3'C4DO3'115.3°120.2°
C2DC3'C4DH10120.5°116.9°
C2DC3'O3'H10125.9°121.6°
C2DC3'C4DC5'100.4°154.1°
C2DC3'C4DO4D21.3°32.9°
C3'C2DC1'H784.2°131.9°
C3'C2DO2'H965.3°73.1°
C2DC3'C4DH11139.3°83.5°
C2DC3'O3'H12180.0°169.7°
C4DC3'O3'H10123.4°123.5°
C3'C4DC5'O4D119.5°118.5°
C3'C4DC5'H11120.1°123.1°
C3'C4DO4DH11117.5°116.7°
C3'C4DC5'O5'46.1°72.3°
C4DC3'C2DH882.7°145.7°
C4DC3'O3'H1269.3°75.4°
C3'C4DC5'H13165.9°167.2°
C3'C4DC5'H1473.7°48.6°
O3'C3'C4DC5'144.2°85.6°
O3'C3'C4DO4D94.1°153.1°
O3'C3'C2DH8164.3°94.5°
O3'C3'C4DH1123.9°36.8°
C5'C4DO4DH11120.1°117.8°
C4DC5'O5'H13119.8°120.3°
C4DC5'O5'H14119.8°120.9°
C4DC5'O5'PA178.6°158.2°
C5'C4DC3'H1020.0°37.2°
C4DC5'H13H14120.6°119.6°
O4DC4DC5'O5'73.4°169.2°
C4DO4DC1'H795.8°111.1°
O4DC4DC3'H10141.7°84.1°
O4DC4DC5'H1346.4°48.7°
O4DC4DC5'H14166.8°69.9°
C5'O5'PAO2A171.1°179.6°
C5'O5'PAO1A63.5°52.1°
C5'O5'PAO3A50.3°60.1°
O5'C5'C4DH11166.2°50.8°
O5'C5'H13H14120.7°119.9°
O5'PAO2AO1A122.7°125.8°
O5'PAO2AO3A117.3°117.2°
O5'PAO1AO3A114.6°112.1°
O5'PAO3APB66.8°160.8°
PAO5'C5'H1358.8°81.6°
PAO5'C5'H1461.6°37.3°
O5'PAO1AH15121.9°179.4°
O2APAO1AO3A123.6°119.2°
O2APAO3APB51.5°76.1°
O2APAO1AH150.0°50.6°
O1APAO3APB176.4°46.1°
PAO3APBO2B102.1°169.2°
PAO3APBO1B32.8°46.6°
PAO3APBO3B143.2°66.5°
O3APAO1AH15123.6°68.6°
O3APBO2BO1B129.4°117.1°
O3APBO2BO3B104.6°117.5°
O3APBO1BO3B105.3°110.8°
O3APBO3BC1080.7°79.1°
O3APBO1BH16126.2°179.9°
O2BPBO1BO3B128.5°129.5°
O2BPBO3BC1028.8°41.1°
O2BPBO1BH160.0°60.3°
O1BPBO3BC10163.3°169.6°
PBO3BC10C9'115.6°139.0°
O3BPBO1BH16128.5°69.3°
PBO3BC10H17124.1°18.3°
PBO3BC10H184.8°100.6°
O3BC10C9'H17120.4°121.0°
O3BC10C9'H18120.4°120.8°
O3BC10C9'C8'172.4°153.3°
O3BC10C9'O9'49.9°81.3°
O3BC10H17H18118.9°120.2°
O3BC10C9'H1970.3°35.0°
C10C9'C8'O9'120.2°120.2°
C10C9'C8'H19116.8°119.0°
C10C9'O9'H19119.7°115.7°
C10C9'C8'S8'54.4°72.3°
C10C9'C8'C7'127.0°108.2°
C10C9'O9'C7157.1°138.6°
C9'C10H17H18118.9°119.0°
C8'C9'O9'H19122.9°119.8°
C9'C8'S8'C7'178.5°179.5°
C9'C8'C7'S7'179.5°174.6°
C9'C8'C7'C6'7.4°7.3°
C8'C9'O9'C739.8°14.1°
C8'C9'C10H1752.0°32.3°
C8'C9'C10H1867.2°85.9°
O9'C9'C8'S8'174.6°167.6°
O9'C9'C8'C7'6.8°11.9°
C9'O9'C7C6'59.5°41.0°
C9'O9'C7N8'165.3°164.3°
O9'C9'C10H1770.5°157.7°
O9'C9'C10H18170.2°39.5°
C9'O9'C7H2153.6°79.5°
S8'C8'C7'S7'2.1°5.9°
S8'C8'C7'C6'171.0°172.1°
S8'C8'C9'H1962.4°46.7°
C8'C7'S7'C6'173.9°178.1°
C8'C7'C6'C79.6°19.8°
C8'C7'C6'N5'107.3°106.1°
C7'C8'C9'H19116.1°132.8°
C8'C7'C6'H20130.2°136.1°
S7'C7'C6'C7164.4°158.3°
S7'C7'C6'N5'78.7°75.8°
S7'C7'C6'H2043.8°42.0°
C7'C6'C7N5'119.0°125.4°
C7'C6'C7H20120.6°116.9°
C7'C6'N5'H20122.2°117.6°
C7'C6'C7O9'42.2°41.7°
C7'C6'C7N8'172.3°162.2°
C7'C6'N5'C4A162.4°154.2°
C7'C6'C7H2171.4°78.6°
C7'C6'N5'H2241.8°26.0°
C7C6'N5'H20120.1°116.8°
C6'C7O9'N8'135.2°123.3°
C6'C7O9'H21113.1°120.4°
C6'C7N8'H21115.6°119.8°
C7C6'N5'C4A44.7°28.6°
C6'C7N8'C4B32.0°30.1°
C7C6'N5'H2275.9°151.7°
C6'C7N8'H2588.7°149.6°
N5'C6'C7O9'76.7°83.7°
N5'C6'C7N8'53.4°36.8°
C6'N5'C4AH22120.6°179.7°
C6'N5'C4AC4'157.1°170.8°
C6'N5'C4AC4B21.2°9.2°
N5'C6'C7H21169.6°155.9°
O9'C7N8'H21111.7°116.8°
O9'C7N8'C4B100.7°93.4°
C7O9'C9'H1983.1°105.7°
O9'C7C6'H20162.8°158.6°
O9'C7N8'H25138.6°87.0°
C7N8'C4BC4A2.3°10.6°
C7N8'C4BH25120.7°179.6°
C7N8'C4BN1'175.3°167.1°
N8'C7C6'H2067.1°80.8°
N5'C4AC4'C4B178.4°179.9°
N5'C4AC4BN8'2.8°1.7°
N5'C4AC4BN1'179.8°179.3°
N5'C4AC4'N3'179.6°179.7°
N5'C4AC4'O4'0.9°0.9°
C4AN5'C6'H2075.4°88.2°
C4'C4AC4BN8'178.8°178.4°
C4'C4AC4BN1'1.4°0.8°
C4AC4'N3'C2'1.9°0.8°
C4AC4'N3'O4'178.8°178.9°
C4'C4AN5'H2282.3°9.0°
C4AC4'N3'H1178.0°179.6°
C4AC4BN8'N1'177.6°177.7°
C4AC4BN1'C2'0.6°1.2°
C4BC4AC4'N3'2.1°0.2°
C4BC4AC4'O4'179.2°179.0°
C4BC4AN5'H2299.4°171.1°
C4AC4BN8'H25118.4°169.0°
N8'C4BN1'C2'178.3°178.9°
C4BN8'C7H21147.6°149.8°
C4BN1'C2'N3'0.3°0.7°
C4BN1'C2'N2'179.6°179.3°
N1'C4BN8'H2564.0°13.3°
N1'C2'N3'N2'179.3°180.0°
N1'C2'N3'C4'1.0°0.4°
N1'C2'N2'H260.0°0.0°
N1'C2'N2'H27180.0°180.0°
N1'C2'N3'H1178.9°180.0°
C2'N3'C4'H1180.0°179.6°
C2'N3'C4'O4'179.3°179.7°
N3'C2'N2'H26179.2°180.0°
N3'C2'N2'H270.8°0.0°
N2'C2'N3'C4'179.7°179.6°
C2'N2'H26H27180.0°179.9°
N2'C2'N3'H10.4°0.0°
O4'C4'N3'H10.7°0.7°
H3C5C6H40.1°0.1°
H7C1'C2DH8158.7°111.2°
H8C2DO2'H958.1°51.3°
H8C2DC3'H1037.7°27.5°
H10C3'C4DH11100.3°159.6°
H10C3'O3'H1254.1°48.2°
H11C4DC5'H1374.0°69.7°
H11C4DC5'H1446.4°171.7°
H17C10C9'H19169.3°86.1°
H18C10C9'H1950.0°155.7°
H20C6'C7H2149.1°38.3°
H20C6'N5'H22164.0°91.5°
H21C7N8'H2526.9°29.8°

258735

PDB entries from 2026-08-26

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