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AGO

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CM'N2'sing1.47Å1.47Å
N2'C2'sing1.39Å1.33Å
C2'C3'doub1.39Å1.40ÅAromatic
C2'C1'sing1.40Å1.40ÅAromatic
C3'C4'sing1.38Å1.40ÅAromatic
C4'C5'doub1.39Å1.39ÅAromatic
C5'C6'sing1.38Å1.40ÅAromatic
C6'C1'doub1.40Å1.40ÅAromatic
C1'C'sing1.47Å1.54Å
C'O1'doub1.22Å1.23Å
C'O3'sing1.35Å1.36Å
O3'C3Bsing1.45Å1.45Å
C3BC2Bsing1.52Å1.52Å
C3BC4Bsing1.54Å1.53Å
C2BO2'doub1.21Å1.23Å
C2BC1Bsing1.52Å1.52Å
C4BC5Bsing1.53Å1.54Å
C4BO4'sing1.45Å1.47Å
C5BO5'sing1.43Å1.44Å
O5'PAsing1.61Å1.60Å
PAO1Asing1.61Å1.48Å
PAO2Adoub1.48Å1.48Å
PAO3Asing1.61Å1.61Å
O3APBsing1.61Å1.60Å
PBO1Bdoub1.48Å1.47Å
PBO2Bsing1.61Å1.47Å
PBN3Bsing1.68Å1.63Å
N3BPGsing1.68Å1.64Å
PGO2Gsing1.61Å1.61Å
PGO3Gsing1.61Å1.63Å
PGO1Gdoub1.48Å1.48Å
O4'C1Bsing1.44Å1.45Å
C1BN9sing1.46Å1.49Å
N9C8sing1.36Å1.33ÅAromatic
N9C4sing1.37Å1.33ÅAromatic
C8N7doub1.30Å1.33ÅAromatic
N7C5sing1.36Å1.33ÅAromatic
C5C4doub1.40Å1.39ÅAromatic
C5C6sing1.41Å1.39Å
C4N3sing1.34Å1.35Å
N3C2doub1.31Å1.35Å
C2N2sing1.37Å1.33Å
C2N1sing1.36Å1.40Å
N1C6sing1.35Å1.40Å
C6O6doub1.22Å1.23Å
CM'HM'sing1.09Å1.10Å
CM'HM'Asing1.09Å1.10Å
CM'HM'Bsing1.09Å1.10Å
N2'HN2'sing0.97Å1.00Å
C3'H3'sing1.08Å1.08Å
C4'H4'sing1.08Å1.08Å
C5'H5'sing1.08Å1.08Å
C6'H6'sing1.08Å1.08Å
C3BH3Bsing1.09Å1.10Å
C4BH4Bsing1.09Å1.10Å
C5BH5Bsing1.09Å1.10Å
C5BH5BAsing1.09Å1.10Å
O1AHO1Asing0.97Å0.95Å
O2BHO2Bsing0.97Å0.95Å
N3BHN3Bsing1.01Å1.00Å
O2GHO2Gsing0.97Å0.95Å
O3GHO3Gsing0.97Å0.95Å
C1BH1Bsing1.09Å1.10Å
C8H8sing1.08Å1.08Å
N2HN2sing0.97Å1.00Å
N2HN2Asing0.97Å1.00Å
N1HN1sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CM'N2'C2'120.7°120.0°
N2'CM'HM'109.5°109.5°
N2'CM'HM'A109.5°109.5°
N2'CM'HM'B109.4°109.5°
CM'N2'HN2'105.9°119.9°
N2'C2'C3'119.7°120.2°
N2'C2'C1'120.6°120.2°
C2'N2'HN2'105.9°120.0°
C3'C2'C1'119.7°119.6°
C2'C3'C4'120.5°120.1°
C2'C3'H3'119.8°119.9°
C2'C1'C6'119.6°119.6°
C2'C1'C'121.0°120.2°
C3'C4'C5'119.8°120.5°
C4'C3'H3'119.8°120.0°
C3'C4'H4'120.1°119.8°
C4'C5'C6'119.9°120.4°
C5'C4'H4'120.1°119.8°
C4'C5'H5'120.1°119.8°
C5'C6'C1'120.6°119.9°
C6'C5'H5'120.1°119.8°
C5'C6'H6'119.7°120.0°
C6'C1'C'119.4°120.2°
C1'C6'H6'119.7°120.0°
C1'C'O1'121.4°120.0°
C1'C'O3'118.3°120.0°
O1'C'O3'120.2°120.0°
C'O3'C3B117.3°117.0°
O3'C3BC2B117.1°110.5°
O3'C3BC4B101.7°110.5°
O3'C3BH3B107.8°110.4°
C2BC3BC4B102.6°104.3°
C3BC2BO2'125.8°127.7°
C3BC2BC1B108.5°104.7°
C2BC3BH3B106.9°110.5°
C3BC4BC5B111.4°110.4°
C3BC4BO4'108.4°104.3°
C4BC3BH3B121.3°110.6°
C3BC4BH4B109.1°110.4°
O2'C2BC1B125.7°127.6°
C2BC1BO4'103.9°105.1°
C2BC1BN9115.1°110.3°
C2BC1BH1B108.0°110.3°
C5BC4BO4'110.0°110.5°
C4BC5BO5'111.5°109.4°
C5BC4BH4B107.4°110.4°
C4BC5BH5B108.8°109.4°
C4BC5BH5BA108.3°109.4°
C4BO4'C1B110.4°104.8°
O4'C4BH4B110.5°110.6°
C5BO5'PA121.3°123.0°
O5'C5BH5B108.8°109.5°
O5'C5BH5BA108.3°109.5°
O5'PAO1A108.1°109.5°
O5'PAO2A109.5°109.5°
O5'PAO3A101.1°109.5°
O1APAO2A119.4°109.5°
O1APAO3A109.2°109.4°
PAO1AHO1A109.5°114.0°
O2APAO3A108.0°109.5°
PAO3APB121.7°134.0°
O3APBO1B107.4°109.5°
O3APBO2B109.1°109.5°
O3APBN3B101.1°109.4°
O1BPBO2B119.3°109.5°
O1BPBN3B108.7°109.5°
O2BPBN3B109.7°109.5°
PBO2BHO2B109.5°114.0°
PBN3BPG114.1°111.0°
PBN3BHN3B108.0°111.0°
N3BPGO2G107.2°109.5°
N3BPGO3G104.7°109.5°
N3BPGO1G114.7°109.5°
PGN3BHN3B108.0°111.0°
O2GPGO3G104.2°109.5°
O2GPGO1G113.0°109.5°
PGO2GHO2G109.5°114.0°
O3GPGO1G112.2°109.5°
PGO3GHO3G109.5°114.0°
O4'C1BN9104.1°110.3°
O4'C1BH1B118.3°110.3°
C1BN9C8125.8°126.2°
C1BN9C4126.3°126.3°
N9C1BH1B107.7°110.4°
C8N9C4107.9°107.5°
N9C8N7109.6°109.8°
N9C8H8125.2°125.1°
N9C4C5107.1°106.1°
N9C4N3132.5°134.2°
C8N7C5108.0°109.3°
N7C8H8125.2°125.1°
N7C5C4107.3°107.2°
N7C5C6132.9°134.2°
C4C5C6119.8°118.6°
C5C4N3120.4°119.7°
C5C6N1118.9°118.4°
C5C6O6121.1°120.8°
C4N3C2121.5°121.1°
N3C2N2120.1°119.0°
N3C2N1120.4°121.9°
N2C2N1119.5°119.0°
C2N2HN2110.4°120.0°
C2N2HN2A124.8°120.0°
C2N1C6119.1°120.3°
C2N1HN1120.5°119.8°
N1C6O6120.0°120.8°
C6N1HN1120.5°119.8°
HM'CM'HM'A109.5°109.4°
HM'CM'HM'B109.5°109.5°
HM'ACM'HM'B109.5°109.5°
H5BC5BH5BA111.1°109.5°
HN2N2HN2A124.8°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CM'N2'C2'HN2'120.0°180.0°
CM'N2'C2'C3'84.9°5.7°
CM'N2'C2'C1'95.4°174.0°
N2'CM'HM'HM'A120.0°119.9°
N2'CM'HM'HM'B120.0°120.1°
N2'CM'HM'AHM'B120.0°120.1°
N2'C2'C3'C1'179.8°179.7°
N2'C2'C3'C4'179.9°180.0°
N2'C2'C1'C6'179.7°179.7°
N2'C2'C1'C'0.3°0.0°
C2'N2'CM'HM'168.3°59.9°
C2'N2'CM'HM'A48.3°60.0°
C2'N2'CM'HM'B71.7°180.0°
N2'C2'C3'H3'0.2°0.0°
C2'C3'C4'H3'180.0°180.0°
C2'C3'C4'C5'0.1°0.0°
C3'C2'C1'C6'0.1°0.5°
C3'C2'C1'C'179.5°179.7°
C3'C2'N2'HN2'35.1°174.3°
C2'C3'C4'H4'179.9°180.0°
C1'C2'C3'C4'0.1°0.3°
C2'C1'C6'C5'0.3°0.6°
C2'C1'C6'C'179.4°179.8°
C2'C1'C'O1'42.7°5.5°
C2'C1'C'O3'134.3°174.5°
C1'C2'N2'HN2'144.6°6.0°
C1'C2'C3'H3'179.9°179.8°
C2'C1'C6'H6'179.8°179.7°
C3'C4'C5'H4'180.0°180.0°
C3'C4'C5'C6'0.1°0.0°
C3'C4'C5'H5'179.9°179.9°
C4'C5'C6'H5'180.0°179.9°
C4'C5'C6'C1'0.3°0.3°
C5'C4'C3'H3'179.9°180.0°
C4'C5'C6'H6'179.7°179.9°
C5'C6'C1'H6'180.0°179.8°
C5'C6'C1'C'179.7°179.7°
C6'C5'C4'H4'179.9°180.0°
C6'C1'C'O1'137.9°174.2°
C6'C1'C'O3'45.1°5.7°
C1'C6'C5'H5'179.7°179.8°
C1'C'O1'O3'177.0°179.9°
C1'C'O3'C3B124.0°180.0°
C'C1'C6'H6'0.4°0.1°
O1'C'O3'C3B58.9°0.0°
C'O3'C3BC2B48.1°91.5°
C'O3'C3BC4B158.9°153.6°
C'O3'C3BH3B72.5°31.0°
O3'C3BC2BC4B110.3°118.7°
O3'C3BC2BH3B121.0°122.4°
O3'C3BC4BH3B119.4°122.5°
O3'C3BC2BO2'91.3°61.6°
O3'C3BC2BC1B89.7°118.4°
O3'C3BC4BC5B125.3°99.0°
O3'C3BC4BO4'113.6°142.3°
O3'C3BC4BH4B6.8°23.4°
C2BC3BC4BH3B119.0°118.8°
C3BC2BO2'C1B178.8°180.0°
C2BC3BC4BC5B113.2°142.3°
C2BC3BC4BO4'8.0°23.5°
C3BC2BC1BO4'25.7°24.2°
C3BC2BC1BN9138.9°143.2°
C2BC3BC4BH4B128.4°95.3°
C3BC2BC1BH1B100.8°94.7°
C4BC3BC2BO2'158.4°179.7°
C4BC3BC2BC1B20.6°0.3°
C3BC4BC5BO4'120.3°114.9°
C3BC4BC5BH4B119.4°122.4°
C3BC4BO4'H4B119.5°118.8°
C3BC4BC5BO5'59.0°175.0°
C3BC4BO4'C1B8.0°39.7°
C3BC4BC5BH5B179.0°55.0°
C3BC4BC5BH5BA60.1°65.0°
O2'C2BC1BO4'153.3°155.8°
O2'C2BC1BN940.1°36.8°
O2'C2BC3BH3B29.7°60.8°
O2'C2BC1BH1B80.3°85.3°
C2BC1BO4'C4B20.4°40.3°
C2BC1BO4'N9120.9°118.9°
C2BC1BO4'H1B119.6°118.9°
C2BC1BN9H1B120.5°122.1°
C2BC1BN9C855.1°95.0°
C2BC1BN9C4126.6°84.7°
C1BC2BC3BH3B149.3°119.2°
C5BC4BO4'H4B118.5°122.6°
C4BC5BO5'H5B120.0°120.0°
C4BC5BO5'H5BA119.1°119.9°
C4BC5BO5'PA158.8°180.0°
C5BC4BO4'C1B130.0°158.3°
C5BC4BC3BH3B5.9°23.4°
C4BC5BH5BH5BA119.2°119.9°
O4'C4BC5BO5'61.3°70.1°
C4BO4'C1BN9141.3°159.2°
O4'C4BC3BH3B127.0°95.3°
O4'C4BC5BH5B58.7°169.9°
O4'C4BC5BH5BA179.6°49.9°
C4BO4'C1BH1B99.2°78.6°
C5BO5'PAO1A178.4°65.0°
C5BO5'PAO2A46.9°55.0°
C5BO5'PAO3A66.9°175.0°
O5'C5BC4BH4B178.4°52.6°
O5'C5BH5BH5BA119.2°120.1°
O5'PAO1AO2A126.0°120.0°
O5'PAO1AO3A109.2°120.0°
O5'PAO2AO3A109.3°120.0°
O5'PAO3APB166.7°165.0°
PAO5'C5BH5B81.2°60.0°
PAO5'C5BH5BA39.7°60.1°
O5'PAO1AHO1A118.5°59.9°
O1APAO2AO3A125.4°120.0°
O1APAO3APB79.5°75.0°
O2APAO3APB51.7°45.0°
O2APAO1AHO1A7.4°179.9°
PAO3APBO1B152.0°60.0°
PAO3APBO2B21.3°60.0°
PAO3APBN3B94.2°180.0°
O3APAO1AHO1A132.3°60.1°
O3APBO1BO2B124.7°120.0°
O3APBO1BN3B108.6°120.0°
O3APBO2BN3B109.9°119.9°
O3APBN3BPG169.8°180.0°
O3APBO2BHO2B120.3°60.0°
O3APBN3BHN3B70.2°56.1°
O1BPBO2BN3B126.2°120.1°
O1BPBN3BPG77.4°60.0°
O1BPBO2BHO2B115.8°180.0°
O1BPBN3BHN3B42.6°63.9°
O2BPBN3BPG54.7°60.0°
O2BPBN3BHN3B174.7°176.1°
PBN3BPGHN3B120.0°123.9°
PBN3BPGO2G72.2°60.0°
PBN3BPGO3G177.5°180.0°
PBN3BPGO1G54.1°60.0°
N3BPBO2BHO2B10.4°60.0°
N3BPGO2GO3G110.6°120.0°
N3BPGO2GO1G127.3°120.0°
N3BPGO3GO1G125.0°120.0°
N3BPGO2GHO2G46.5°60.0°
N3BPGO3GHO3G176.1°180.0°
O2GPGO3GO1G122.6°120.0°
O2GPGN3BHN3B47.8°63.9°
O2GPGO3GHO3G63.7°60.0°
O3GPGN3BHN3B62.4°56.1°
O3GPGO2GHO2G157.1°60.0°
O1GPGN3BHN3B174.1°176.1°
O1GPGO2GHO2G80.8°180.0°
O1GPGO3GHO3G58.9°60.0°
O4'C1BN9H1B126.4°122.2°
O4'C1BN9C858.0°20.7°
O4'C1BN9C4120.4°159.6°
C1BO4'C4BH4B111.5°79.1°
C1BN9C8C4178.6°179.8°
C1BN9C8N7179.2°180.0°
C1BN9C4C5179.1°179.8°
C1BN9C4N31.3°0.0°
C1BN9C8H80.9°0.0°
N9C8N7H8180.0°180.0°
N9C8N7C50.3°0.1°
C8N9C4C50.6°0.4°
C8N9C4N3179.9°179.8°
C8N9C1BH1B175.6°142.9°
C4N9C8N70.6°0.2°
N9C4C5N70.4°0.4°
N9C4C5N3179.6°179.9°
N9C4C5C6179.6°179.8°
N9C4N3C2179.4°180.0°
C4N9C1BH1B6.1°37.4°
C4N9C8H8179.5°179.8°
C8N7C5C40.0°0.3°
C8N7C5C6179.9°180.0°
N7C5C4C6179.9°179.7°
N7C5C4N3179.9°179.7°
N7C5C6N1179.9°179.2°
N7C5C6O60.2°0.0°
C5N7C8H8179.7°179.9°
C5C4N3C20.0°0.2°
C4C5C6N10.1°0.5°
C4C5C6O6179.9°179.7°
C6C5C4N30.0°0.1°
C5C6N1C20.1°0.7°
C5C6N1O6179.8°179.2°
C5C6N1HN1179.9°179.8°
C4N3C2N2180.0°180.0°
C4N3C2N10.1°0.0°
N3C2N2N1179.9°180.0°
N3C2N1C60.1°0.5°
N3C2N2HN2180.0°0.1°
N3C2N2HN2A0.0°180.0°
N3C2N1HN1179.9°180.0°
N2C2N1C6180.0°179.6°
C2N2HN2HN2A180.0°179.9°
N2C2N1HN10.0°0.0°
C2N1C6HN1180.0°179.5°
C2N1C6O6179.9°179.9°
N1C2N2HN20.1°179.9°
N1C2N2HN2A179.9°0.0°
O6C6N1HN10.1°0.6°
HM'CM'HM'AHM'B120.0°120.0°
HM'CM'N2'HN2'48.3°120.1°
HM'ACM'N2'HN2'71.7°120.0°
HM'BCM'N2'HN2'168.3°0.0°
H3'C3'C4'H4'0.1°0.0°
H4'C4'C5'H5'0.1°0.1°
H5'C5'C6'H6'0.3°0.0°
H3BC3BC4BH4B112.6°145.8°
H4BC4BC5BH5B61.6°67.4°
H4BC4BC5BH5BA59.3°172.6°

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PDB entries from 2024-07-17

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