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AGN

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PGO1Gdoub1.48Å1.47Å
PGO2Gsing1.61Å1.45Å
PGO3Gsing1.61Å1.58Å
PGN3Bsing1.68Å1.64Å
O2GHOG2sing0.97Å0.95Å
O3GHOG3sing0.97Å0.95Å
N3BPBsing1.68Å1.63Å
N3BHNB3sing1.01Å1.02Å
PBO1Bdoub1.48Å1.48Å
PBO2Bsing1.61Å1.48Å
PBO3Asing1.61Å1.61Å
O2BHOB2sing0.97Å0.95Å
O3APAsing1.61Å1.64Å
PAO1Adoub1.48Å1.48Å
PAO2Asing1.61Å1.48Å
PAO5'sing1.61Å1.60Å
O2AHOA2sing0.97Å0.95Å
O5'C5Bsing1.43Å1.42Å
C5BC4Bsing1.53Å1.48Å
C5BH5'2sing1.09Å1.11Å
C5BH5'1sing1.09Å1.12Å
C4BO4'sing1.44Å1.44Å
C4BC3Bsing1.54Å1.55Å
C4BH4Bsing1.09Å1.11Å
O4'C1Bsing1.45Å1.42Å
C3BO3'sing1.45Å1.44Å
C3BC2Bsing1.54Å1.53Å
C3BH3Bsing1.09Å1.12Å
O3'C'sing1.35Å1.43Å
C2BC1Bsing1.54Å1.50Å
C2BH2'1sing1.09Å1.12Å
C2BH2'2sing1.09Å1.11Å
C1BN9sing1.46Å1.47Å
C1BH1'sing1.09Å1.11Å
C'O1'doub1.22Å1.22Å
C'C1'sing1.47Å1.42Å
C1'C2'doub1.40Å1.35ÅAromatic
C1'C6'sing1.40Å1.34ÅAromatic
C2'N2'sing1.39Å1.39Å
C2'C3'sing1.39Å1.36ÅAromatic
N2'CM'sing1.47Å1.46Å
N2'HN2'sing0.97Å1.02Å
CM'HM'1sing1.09Å1.11Å
CM'HM'2sing1.09Å1.11Å
CM'HM'3sing1.09Å1.11Å
C3'C4'doub1.38Å1.34ÅAromatic
C3'H3'sing1.08Å1.10Å
C4'C5'sing1.39Å1.32ÅAromatic
C4'H4'sing1.08Å1.10Å
C5'C6'doub1.38Å1.36ÅAromatic
C5'H5'sing1.08Å1.10Å
C6'H6'sing1.08Å1.10Å
N9C8sing1.36Å1.35ÅAromatic
N9C4sing1.37Å1.36ÅAromatic
C8N7doub1.30Å1.30ÅAromatic
C8H8sing1.08Å1.10Å
N7C5sing1.36Å1.40ÅAromatic
C5C6sing1.41Å1.40ÅAromatic
C5C4doub1.40Å1.37ÅAromatic
C6O6doub1.22Å1.23Å
C6N1sing1.35Å1.35ÅAromatic
N1C2sing1.36Å1.36ÅAromatic
N1HN1sing0.97Å1.02Å
C2N2sing1.37Å1.33Å
C2N3doub1.31Å1.32ÅAromatic
N2HN21sing0.97Å1.02Å
N2HN22sing0.97Å1.02Å
N3C4sing1.34Å1.34ÅAromatic
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1GPGO2G114.0°109.5°
O1GPGO3G103.5°109.5°
O1GPGN3B114.8°109.5°
O2GPGO3G102.4°109.5°
O2GPGN3B115.1°109.5°
PGO2GHOG2114.0°106.8°
O3GPGN3B105.0°109.5°
PGO3GHOG3103.4°106.9°
PGN3BPB114.3°106.7°
PGN3BHNB3110.4°106.6°
PBN3BHNB3110.5°106.7°
N3BPBO1B111.3°109.5°
N3BPBO2B117.7°109.5°
N3BPBO3A104.5°109.4°
O1BPBO2B111.5°109.5°
O1BPBO3A101.5°109.5°
O2BPBO3A108.7°109.5°
PBO2BHOB2117.8°106.8°
PBO3APA123.2°106.8°
O3APAO1A112.5°109.4°
O3APAO2A117.2°109.4°
O3APAO5'92.6°109.5°
O1APAO2A121.9°109.5°
O1APAO5'102.8°109.5°
O2APAO5'102.9°109.5°
PAO2AHOA2117.2°106.8°
PAO5'C5B122.4°106.8°
O5'C5BC4B107.1°109.5°
O5'C5BH5'2113.1°109.4°
O5'C5BH5'1113.0°109.5°
C4BC5BH5'2113.1°109.4°
C4BC5BH5'1113.1°109.5°
C5BC4BO4'108.2°110.4°
C5BC4BC3B113.3°110.7°
C5BC4BH4B107.3°110.3°
H5'2C5BH5'197.4°109.4°
O4'C4BC3B108.0°104.7°
O4'C4BH4B112.7°110.4°
C4BO4'C1B107.1°105.4°
C3BC4BH4B107.5°110.2°
C4BC3BO3'103.8°110.6°
C4BC3BC2B101.1°104.2°
C4BC3BH3B120.7°110.5°
O4'C1BC2B104.5°104.8°
O4'C1BN9104.9°110.5°
O4'C1BH1'116.7°110.3°
O3'C3BC2B116.7°110.5°
O3'C3BH3B106.3°110.4°
C3BO3'C'113.9°120.1°
C2BC3BH3B108.8°110.5°
C3BC2BC1B102.4°104.1°
C3BC2BH2'1114.9°110.5°
C3BC2BH2'2114.9°110.6°
O3'C'O1'117.4°120.0°
O3'C'C1'122.1°120.1°
C1BC2BH2'1114.9°110.5°
C1BC2BH2'2114.9°110.5°
C2BC1BN9113.0°110.4°
C2BC1BH1'109.1°110.4°
H2'1C2BH2'295.6°110.5°
N9C1BH1'108.7°110.3°
C1BN9C8125.2°126.2°
C1BN9C4126.5°126.3°
O1'C'C1'120.4°120.0°
C'C1'C2'121.7°120.2°
C'C1'C6'119.5°120.2°
C2'C1'C6'117.6°119.5°
C1'C2'N2'121.0°120.2°
C1'C2'C3'118.8°119.7°
C1'C6'C5'122.4°120.0°
C1'C6'H6'118.1°120.1°
N2'C2'C3'119.9°120.2°
C2'N2'CM'125.8°120.0°
C2'N2'HN2'106.4°120.0°
C2'C3'C4'123.4°120.1°
C2'C3'H3'118.8°120.0°
CM'N2'HN2'106.5°120.0°
N2'CM'HM'1125.7°109.5°
N2'CM'HM'2106.4°109.5°
N2'CM'HM'3106.5°109.5°
HM'1CM'HM'2106.5°109.4°
HM'1CM'HM'3106.5°109.5°
HM'2CM'HM'3103.1°109.5°
C4'C3'H3'117.8°119.9°
C3'C4'C5'117.6°120.5°
C3'C4'H4'122.0°119.8°
C5'C4'H4'120.4°119.8°
C4'C5'C6'120.2°120.3°
C4'C5'H5'118.4°119.9°
C6'C5'H5'121.4°119.8°
C5'C6'H6'119.5°120.0°
C8N9C4104.7°107.5°
N9C8N7116.8°109.8°
N9C8H8123.6°125.2°
N9C4C5106.5°106.1°
N9C4N3125.2°134.2°
N7C8H8119.7°125.1°
C8N7C5101.3°109.4°
N7C5C6129.5°134.2°
N7C5C4110.7°107.2°
C6C5C4119.8°118.6°
C5C6O6129.2°120.8°
C5C6N1110.2°118.4°
C5C4N3128.3°119.6°
O6C6N1120.4°120.8°
C6N1C2127.4°120.3°
C6N1HN1115.5°119.9°
C2N1HN1117.0°119.8°
N1C2N2116.7°119.0°
N1C2N3123.1°121.9°
N2C2N3120.2°119.1°
C2N2HN21116.7°120.0°
C2N2HN22109.6°120.0°
C2N3C4111.2°121.1°
HN21N2HN22109.7°119.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1GPGO2GO3G111.0°120.0°
O1GPGO2GN3B135.7°120.0°
O1GPGO3GN3B120.7°120.0°
O1GPGO2GHOG2180.0°60.0°
O1GPGO3GHOG3180.0°180.0°
O1GPGN3BPB35.3°60.0°
O1GPGN3BHNB3160.5°53.8°
O2GPGO3GN3B120.6°120.0°
O2GPGO3GHOG361.2°60.0°
O2GPGN3BPB100.0°180.0°
O2GPGN3BHNB325.2°66.2°
O3GPGO2GHOG269.0°60.0°
O3GPGN3BPB148.2°60.0°
O3GPGN3BHNB386.6°173.8°
N3BPGO2GHOG244.3°180.0°
N3BPGO3GHOG359.3°60.0°
PGN3BPBHNB3125.2°113.7°
PGN3BPBO1B102.7°60.1°
PGN3BPBO2B27.8°60.0°
PGN3BPBO3A148.5°180.0°
N3BPBO1BO2B133.7°120.0°
N3BPBO1BO3A110.7°119.9°
N3BPBO2BO3A118.5°120.0°
N3BPBO2BHOB2179.9°60.0°
N3BPBO3APA115.4°180.0°
HNB3N3BPBO1B22.6°53.7°
HNB3N3BPBO2B153.1°173.7°
HNB3N3BPBO3A86.2°66.3°
O1BPBO2BO3A111.1°120.0°
O1BPBO2BHOB249.5°180.0°
O1BPBO3APA128.7°60.0°
O2BPBO3APA11.1°60.0°
O3APBO2BHOB261.6°60.0°
PBO3APAO1A76.4°60.0°
PBO3APAO2A72.6°60.0°
PBO3APAO5'178.5°180.0°
O3APAO1AO2A147.4°120.0°
O3APAO1AO5'98.3°120.0°
O3APAO2AO5'99.8°120.0°
O3APAO2AHOA2180.0°60.1°
O3APAO5'C5B45.4°180.0°
O1APAO2AO5'114.3°120.1°
O1APAO2AHOA234.0°180.0°
O1APAO5'C5B159.3°60.0°
O2APAO5'C5B73.3°60.0°
O5'PAO2AHOA280.2°59.9°
PAO5'C5BC4B171.6°180.0°
PAO5'C5BH5'246.3°60.0°
PAO5'C5BH5'163.1°59.9°
O5'C5BC4BH5'2125.3°120.0°
O5'C5BC4BH5'1125.2°120.1°
O5'C5BH5'2H5'1119.0°120.0°
O5'C5BC4BO4'56.8°61.4°
O5'C5BC4BC3B62.9°176.9°
O5'C5BC4BH4B178.6°60.8°
C4BC5BH5'2H5'1119.1°120.0°
C5BC4BO4'C3B123.0°119.2°
C5BC4BO4'H4B118.4°122.2°
C5BC4BC3BH4B118.3°122.3°
C5BC4BO4'C1B137.4°159.5°
C5BC4BC3BO3'130.4°98.4°
C5BC4BC3BC2B108.3°142.8°
C5BC4BC3BH3B11.6°24.0°
H5'2C5BC4BO4'177.9°58.6°
H5'2C5BC4BC3B62.4°56.9°
H5'2C5BC4BH4B56.1°179.2°
H5'1C5BC4BO4'68.4°178.5°
H5'1C5BC4BC3B171.9°63.0°
H5'1C5BC4BH4B53.4°59.3°
O4'C4BC3BH4B121.9°118.7°
O4'C4BC3BO3'109.8°142.6°
O4'C4BC3BC2B11.5°23.8°
O4'C4BC3BH3B131.4°94.9°
C4BO4'C1BC2B35.2°40.4°
C4BO4'C1BN9154.3°159.3°
C4BO4'C1BH1'85.4°78.4°
C3BC4BO4'C1B14.3°40.3°
C4BC3BO3'C2B110.2°114.9°
C4BC3BO3'H3B128.3°122.5°
C4BC3BC2BH3B128.0°118.7°
C4BC3BO3'C'141.6°151.9°
C4BC3BC2BC1B31.3°0.1°
C4BC3BC2BH2'193.9°118.5°
C4BC3BC2BH2'2156.6°118.8°
H4BC4BO4'C1B104.2°78.3°
H4BC4BC3BO3'12.1°23.9°
H4BC4BC3BC2B133.4°94.9°
H4BC4BC3BH3B106.8°146.3°
O4'C1BC2BC3B41.9°24.0°
O4'C1BC2BN9113.4°119.0°
O4'C1BC2BH1'125.5°118.8°
O4'C1BC2BH2'183.3°94.7°
O4'C1BC2BH2'2167.2°142.7°
O4'C1BN9H1'125.5°122.3°
O4'C1BN9C837.6°25.5°
O4'C1BN9C4117.5°154.9°
O3'C3BC2BH3B120.2°122.5°
O3'C3BC2BC1B80.4°118.7°
O3'C3BC2BH2'1154.3°122.7°
O3'C3BC2BH2'244.8°0.0°
C3BO3'C'O1'25.3°0.1°
C3BO3'C'C1'156.4°180.0°
C2BC3BO3'C'108.2°93.2°
C3BC2BC1BH2'1125.2°118.7°
C3BC2BC1BH2'2125.3°118.7°
C3BC2BH2'1H2'2120.8°122.7°
C3BC2BC1BN9155.4°142.9°
C3BC2BC1BH1'83.6°94.8°
H3BC3BO3'C'13.3°29.4°
H3BC3BC2BC1B159.4°118.8°
H3BC3BC2BH2'134.1°0.2°
H3BC3BC2BH2'275.4°122.5°
O3'C'O1'C1'178.4°179.9°
O3'C'C1'C2'121.1°174.7°
O3'C'C1'C6'71.9°5.9°
C1BC2BH2'1H2'2120.7°122.6°
C2BC1BN9H1'121.3°122.3°
C2BC1BN9C875.6°90.0°
C2BC1BN9C4129.3°89.7°
H2'1C2BC1BN930.1°24.3°
H2'1C2BC1BH1'151.2°146.5°
H2'2C2BC1BN979.3°98.3°
H2'2C2BC1BH1'41.7°23.9°
C1BN9C8C4159.5°179.7°
C1BN9C8N7158.2°179.9°
C1BN9C8H821.8°0.0°
C1BN9C4C5158.5°179.9°
C1BN9C4N321.4°0.8°
H1'C1BN9C8163.1°147.8°
H1'C1BN9C48.0°32.6°
O1'C'C1'C2'57.2°5.2°
O1'C'C1'C6'109.8°174.2°
C'C1'C2'C6'167.3°179.4°
C'C1'C2'N2'4.8°0.3°
C'C1'C2'C3'169.4°180.0°
C'C1'C6'C5'171.1°180.0°
C'C1'C6'H6'8.9°0.3°
C1'C2'N2'C3'174.1°179.7°
C1'C2'N2'CM'150.1°174.0°
C1'C2'N2'HN2'24.8°6.0°
C1'C2'C3'C4'0.2°0.4°
C1'C2'C3'H3'179.9°179.8°
C2'C1'C6'C5'3.5°0.6°
C2'C1'C6'H6'176.5°179.7°
C6'C1'C2'N2'172.1°179.7°
C6'C1'C2'C3'2.1°0.6°
C1'C6'C5'C4'3.0°0.3°
C1'C6'C5'H6'180.0°179.7°
C1'C6'C5'H5'176.9°179.7°
C2'N2'CM'HN2'125.2°180.0°
C2'N2'CM'HM'1180.0°180.0°
C2'N2'CM'HM'254.8°60.0°
C2'N2'CM'HM'354.7°60.0°
N2'C2'C3'C4'174.1°180.0°
N2'C2'C3'H3'5.9°0.1°
C3'C2'N2'CM'24.0°5.7°
C3'C2'N2'HN2'149.3°174.3°
C2'C3'C4'H3'180.0°179.9°
C2'C3'C4'C5'0.4°0.1°
C2'C3'C4'H4'179.6°180.0°
N2'CM'HM'1HM'2125.2°120.0°
N2'CM'HM'1HM'3125.2°120.0°
N2'CM'HM'2HM'3111.8°120.0°
HN2'N2'CM'HM'154.8°0.1°
HN2'N2'CM'HM'270.5°120.0°
HN2'N2'CM'HM'3180.0°120.0°
HM'1CM'HM'2HM'3111.9°120.0°
C3'C4'C5'H4'180.0°180.0°
C3'C4'C5'C6'1.0°0.1°
C3'C4'C5'H5'179.0°180.0°
H3'C3'C4'C5'179.6°180.0°
H3'C3'C4'H4'0.4°0.1°
C4'C5'C6'H5'180.0°180.0°
C4'C5'C6'H6'177.0°180.0°
H4'C4'C5'C6'179.0°180.0°
H4'C4'C5'H5'1.0°0.0°
H5'C5'C6'H6'3.1°0.0°
N9C8N7H8180.0°180.0°
N9C8N7C51.3°0.0°
C8N9C4C50.7°0.4°
C8N9C4N3179.4°179.5°
C4N9C8N71.3°0.2°
C4N9C8H8178.7°179.7°
N9C4C5N70.0°0.4°
N9C4C5C6179.9°179.8°
N9C4C5N3179.9°179.3°
N9C4N3C2179.0°179.6°
C8N7C5C6179.3°180.0°
C8N7C5C40.8°0.2°
H8C8N7C5178.7°180.0°
N7C5C6C4179.9°179.8°
N7C5C6O65.6°0.0°
N7C5C6N1179.4°180.0°
N7C5C4N3179.9°179.7°
C5C6O6N1174.6°179.9°
C5C6N1C22.3°0.0°
C5C6N1HN1177.7°180.0°
C6C5C4N30.0°0.5°
C4C5C6O6174.5°179.7°
C4C5C6N10.5°0.2°
C5C4N3C21.1°0.5°
O6C6N1C2173.2°179.9°
O6C6N1HN16.8°0.0°
C6N1C2HN1180.0°180.0°
C6N1C2N2173.1°180.0°
C6N1C2N33.7°0.0°
N1C2N2N3176.9°179.9°
N1C2N2HN21180.0°180.0°
N1C2N2HN2254.7°0.0°
N1C2N3C42.7°0.3°
HN1N1C2N27.0°0.1°
HN1N1C2N3176.2°180.0°
C2N2HN21HN22125.3°180.0°
N2C2N3C4173.9°179.8°
N3C2N2HN213.1°0.0°
N3C2N2HN22122.2°179.9°

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PDB entries from 2024-07-17

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