Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

AGG

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.53Å1.48Å
C1H11sing1.09Å1.12Å
C1H12sing1.09Å1.11Å
C1H13sing1.09Å1.11Å
C2C3sing1.53Å1.52Å
C2H21sing1.09Å1.11Å
C2H22sing1.09Å1.11Å
C3C4sing1.53Å1.51Å
C3H31sing1.09Å1.12Å
C3H32sing1.09Å1.12Å
C4S1sing1.81Å1.78Å
C4H41sing1.09Å1.11Å
C4H42sing1.09Å1.12Å
S1O1doub1.42Å1.36Å
S1O2doub1.42Å1.47Å
S1Nsing1.66Å1.67Å
NCAsing1.46Å1.52Å
NHsing0.97Å1.02Å
CACBsing1.53Å1.55Å
CACsing1.51Å1.50Å
CAHAsing1.09Å1.11Å
CBCGsing1.51Å1.50Å
CBHB1sing1.09Å1.12Å
CBHB2sing1.09Å1.11Å
CGCD1doub1.38Å1.38ÅAromatic
CGCD2sing1.38Å1.38ÅAromatic
CD1CE1sing1.38Å1.38ÅAromatic
CD1HD1sing1.08Å1.10Å
CE1CZdoub1.39Å1.40ÅAromatic
CE1HE1sing1.08Å1.10Å
CZOHsing1.36Å1.38Å
CZCE2sing1.39Å1.39ÅAromatic
OHC11sing1.43Å1.44Å
CE2CD2doub1.38Å1.39ÅAromatic
CE2HE2sing1.08Å1.10Å
CD2HD2sing1.08Å1.10Å
COdoub1.21Å1.21Å
COXTsing1.34Å1.21Å
OXTHXTsing0.97Å0.95Å
C11C12sing1.53Å1.53Å
C11H111sing1.09Å1.11Å
C11H112sing1.09Å1.12Å
C12C13sing1.53Å1.52Å
C12H121sing1.09Å1.12Å
C12H122sing1.09Å1.11Å
C13C14sing1.53Å1.53Å
C13H131sing1.09Å1.12Å
C13H132sing1.09Å1.11Å
C14C15sing1.53Å1.53Å
C14H141sing1.09Å1.12Å
C14H142sing1.09Å1.12Å
C15C16sing1.53Å1.53Å
C15C19sing1.53Å1.53Å
C15H15sing1.09Å1.12Å
C16C17sing1.53Å1.53Å
C16H161sing1.09Å1.11Å
C16H162sing1.09Å1.12Å
C17N18sing1.47Å1.47Å
C17H171sing1.09Å1.11Å
C17H172sing1.09Å1.12Å
N18C18sing1.47Å1.47Å
N18H18sing1.01Å1.02Å
C18C19sing1.53Å1.53Å
C18H181sing1.09Å1.12Å
C18H182sing1.09Å1.11Å
C19H191sing1.09Å1.12Å
C19H192sing1.09Å1.11Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1H11111.7°109.5°
C2C1H12110.9°109.5°
C2C1H13111.7°109.5°
C1C2C3110.9°109.5°
C1C2H21111.7°109.5°
C1C2H22111.6°109.4°
H11C1H12111.7°109.5°
H11C1H1398.7°109.4°
H12C1H13111.6°109.5°
C3C2H21111.7°109.5°
C3C2H22111.7°109.5°
C2C3C4103.4°109.5°
C2C3H31114.5°109.5°
C2C3H32114.5°109.4°
H21C2H2298.7°109.5°
C4C3H31114.5°109.5°
C4C3H32114.5°109.4°
C3C4S1113.7°109.5°
C3C4H41110.6°109.5°
C3C4H42110.7°109.5°
H31C3H3296.0°109.5°
S1C4H41110.7°109.4°
S1C4H42110.7°109.4°
C4S1O1107.0°111.6°
C4S1O2108.3°111.6°
C4S1N109.5°103.2°
H41C4H4299.6°109.5°
O1S1O2119.9°122.1°
O1S1N104.2°102.8°
O2S1N107.6°102.8°
S1NCA127.1°120.1°
S1NH106.0°119.9°
CANH106.0°120.0°
NCACB118.9°109.5°
NCAC106.8°109.5°
NCAHA105.4°109.4°
CBCAC111.3°109.5°
CBCAHA100.3°109.5°
CACBCG108.3°109.5°
CACBHB1112.7°109.5°
CACBHB2112.7°109.5°
CCAHA114.1°109.5°
CACO121.7°120.0°
CACOXT117.4°120.0°
CGCBHB1112.7°109.5°
CGCBHB2112.7°109.5°
CBCGCD1119.5°120.0°
CBCGCD2120.6°119.9°
HB1CBHB297.8°109.5°
CD1CGCD2119.9°120.1°
CGCD1CE1120.2°120.1°
CGCD1HD1119.7°120.0°
CGCD2CE2120.6°120.0°
CGCD2HD2119.7°120.0°
CE1CD1HD1120.2°120.0°
CD1CE1CZ120.4°119.9°
CD1CE1HE1119.2°120.0°
CZCE1HE1120.4°120.1°
CE1CZOH121.4°120.0°
CE1CZCE2119.0°120.0°
OHCZCE2119.6°120.0°
CZOHC11110.4°106.8°
CZCE2CD2120.0°119.9°
CZCE2HE2120.1°120.1°
OHC11C12108.7°109.4°
OHC11H111112.5°109.4°
OHC11H112112.5°109.5°
CD2CE2HE2119.8°120.0°
CE2CD2HD2119.8°120.0°
OCOXT120.8°120.0°
COXTHXT117.4°120.0°
C12C11H111112.5°109.5°
C12C11H112112.5°109.5°
C11C12C13109.9°109.5°
C11C12H121112.0°109.5°
C11C12H122112.0°109.5°
H111C11H11297.9°109.5°
C13C12H121112.1°109.5°
C13C12H122112.1°109.5°
C12C13C14108.2°109.5°
C12C13H131112.7°109.4°
C12C13H132112.7°109.5°
H121C12H12298.4°109.5°
C14C13H131112.7°109.4°
C14C13H132112.7°109.5°
C13C14C15110.2°109.5°
C13C14H141111.9°109.4°
C13C14H142112.0°109.6°
H131C13H13297.8°109.5°
C15C14H141111.9°109.4°
C15C14H142111.9°109.5°
C14C15C16110.6°109.6°
C14C15C19110.0°109.6°
C14C15H15108.1°109.6°
H141C14H14298.5°109.4°
C16C15C19108.7°108.9°
C16C15H15109.4°109.6°
C15C16C17108.3°109.3°
C15C16H161112.7°109.5°
C15C16H162112.7°109.5°
C19C15H15110.0°109.6°
C15C19C18108.6°109.3°
C15C19H191112.5°109.5°
C15C19H192112.5°109.5°
C17C16H161112.7°109.5°
C17C16H162112.7°109.5°
C16C17N18109.5°109.8°
C16C17H171112.2°109.4°
C16C17H172112.2°109.5°
H161C16H16297.7°109.6°
N18C17H171112.2°109.5°
N18C17H172112.2°109.4°
C17N18C18108.2°107.3°
C17N18H18112.7°106.7°
H171C17H17298.2°109.3°
C18N18H18112.7°106.7°
N18C18C19109.8°109.8°
N18C18H181112.1°109.4°
N18C18H182112.1°109.4°
C19C18H181112.1°109.4°
C19C18H182112.1°109.5°
C18C19H191112.5°109.5°
C18C19H192112.5°109.5°
H181C18H18298.3°109.4°
H191C19H19297.9°109.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1H11H12124.9°120.1°
C2C1H11H13117.6°119.9°
C2C1H12H13125.3°120.0°
C1C2C3H21125.3°120.0°
C1C2C3H22125.2°120.0°
C1C2H21H22117.6°119.9°
C1C2C3C4179.9°179.9°
C1C2C3H3154.8°60.0°
C1C2C3H3254.6°60.0°
H11C1H12H13109.5°119.9°
H11C1C2C354.7°179.9°
H11C1C2H2170.5°59.9°
H11C1C2H22179.9°60.0°
H12C1C2C3180.0°60.0°
H12C1C2H2154.8°179.9°
H12C1C2H2254.7°60.0°
H13C1C2C354.7°60.0°
H13C1C2H21NaN°60.0°
H13C1C2H2270.5°179.9°
C3C2H21H22117.6°120.1°
C2C3C4H31125.3°120.1°
C2C3C4H32125.2°119.9°
C2C3H31H32120.4°119.9°
C2C3C4S1176.3°180.0°
C2C3C4H4151.1°60.0°
C2C3C4H4258.4°60.1°
H21C2C3C454.6°60.1°
H21C2C3H31179.9°60.0°
H21C2C3H3270.6°180.0°
H22C2C3C454.9°60.0°
H22C2C3H3170.4°180.0°
H22C2C3H32179.9°60.0°
C4C3H31H32120.4°120.0°
C3C4S1H41125.2°120.0°
C3C4S1H42125.3°120.0°
C3C4H41H42116.5°120.0°
C3C4S1O169.8°70.3°
C3C4S1O260.6°70.3°
C3C4S1N177.8°180.0°
H31C3C4S158.4°60.0°
H31C3C4H41176.3°180.0°
H31C3C4H4266.9°60.0°
H32C3C4S151.1°60.1°
H32C3C4H4174.2°59.9°
H32C3C4H42176.4°180.0°
S1C4H41H42116.5°119.9°
C4S1O1O2123.6°135.7°
C4S1O1N116.0°109.9°
C4S1O2N118.3°110.0°
C4S1NCA64.2°60.0°
C4S1NH61.1°120.0°
H41C4S1O155.4°169.7°
H41C4S1O2174.1°49.7°
H41C4S1N57.0°60.0°
H42C4S1O1164.9°49.7°
H42C4S1O264.6°169.7°
H42C4S1N52.5°60.0°
O1S1O2N118.7°114.3°
O1S1NCA50.0°56.1°
O1S1NH175.3°123.9°
O2S1NCA178.3°176.2°
O2S1NH56.4°3.8°
S1NCAH125.3°180.0°
S1NCACB0.8°120.0°
S1NCAC126.1°120.0°
S1NCAHA112.2°0.0°
NCACBC124.8°120.1°
NCACBHA114.2°120.0°
NCACHA116.0°120.0°
NCACBCG76.7°59.9°
NCACBHB1158.0°60.0°
NCACBHB248.5°180.0°
NCACO52.4°150.0°
NCACOXT123.3°30.0°
HNCACB124.5°60.0°
HNCAC108.6°60.0°
HNCAHA13.1°180.0°
CBCACHA112.6°120.0°
CACBCGHB1125.3°120.0°
CACBCGHB2125.3°120.0°
CACBHB1HB2118.6°120.0°
CACBCGCD1155.0°90.0°
CACBCGCD223.3°90.3°
CBCACO78.9°90.0°
CBCACOXT105.3°90.1°
CCACBCG158.5°180.0°
CCACBHB133.2°60.0°
CCACBHB276.2°59.9°
CACOOXT175.6°180.0°
CACOXTHXT180.0°180.0°
HACACBCG37.4°60.0°
HACACBHB187.8°180.0°
HACACBHB2162.7°60.0°
HACACO168.4°30.0°
HACACOXT7.3°150.0°
CGCBHB1HB2118.6°120.0°
CBCGCD1CD2178.3°179.7°
CBCGCD1CE1178.3°180.0°
CBCGCD1HD11.7°0.0°
CBCGCD2CE2178.3°179.7°
CBCGCD2HD21.7°0.2°
HB1CBCGCD179.8°30.0°
HB1CBCGCD2102.0°149.8°
HB2CBCGCD129.7°150.0°
HB2CBCGCD2148.5°29.7°
CGCD1CE1HD1180.0°179.9°
CGCD1CE1CZ0.6°0.1°
CGCD1CE1HE1179.4°179.9°
CD1CGCD2CE20.0°0.5°
CD1CGCD2HD2180.0°179.9°
CD2CGCD1CE10.1°0.3°
CD2CGCD1HD1179.9°179.8°
CGCD2CE2CZ0.5°0.5°
CGCD2CE2HD2180.0°179.5°
CGCD2CE2HE2179.5°179.8°
CD1CE1CZHE1180.0°180.0°
CD1CE1CZOH179.0°180.0°
CD1CE1CZCE21.0°0.1°
HD1CD1CE1CZ179.4°180.0°
HD1CD1CE1HE10.6°0.0°
CE1CZOHCE2180.0°179.9°
CE1CZOHC1111.3°180.0°
CE1CZCE2CD21.0°0.3°
CE1CZCE2HE2179.0°180.0°
HE1CE1CZOH1.0°0.0°
HE1CE1CZCE2179.0°179.9°
OHCZCE2CD2179.0°179.8°
OHCZCE2HE21.0°0.0°
CZOHC11C12149.5°180.0°
CZOHC11H11185.2°60.0°
CZOHC11H11224.3°60.0°
CE2CZOHC11168.7°0.0°
CZCE2CD2HE2180.0°179.7°
CZCE2CD2HD2179.5°179.9°
OHC11C12H111125.3°120.0°
OHC11C12H112125.3°120.0°
OHC11H111H112118.4°120.0°
OHC11C12C13179.4°180.0°
OHC11C12H12155.4°60.0°
OHC11C12H12254.1°60.0°
HE2CE2CD2HD20.5°0.2°
OCOXTHXT4.2°0.0°
C12C11H111H112118.4°120.1°
C11C12C13H121125.3°120.0°
C11C12C13H122125.2°120.0°
C11C12H121H122117.9°120.0°
C11C12C13C14133.4°180.0°
C11C12C13H1318.1°60.0°
C11C12C13H132101.4°60.0°
H111C11C12C1354.1°60.1°
H111C11C12H121179.4°180.0°
H111C11C12H12271.2°60.0°
H112C11C12C1355.4°60.0°
H112C11C12H12169.9°60.0°
H112C11C12H122179.4°180.0°
C13C12H121H122118.0°120.0°
C12C13C14H131125.3°119.9°
C12C13C14H132125.2°120.1°
C12C13H131H132118.6°120.0°
C12C13C14C15179.7°180.0°
C12C13C14H14154.5°60.1°
C12C13C14H14255.0°59.9°
H121C12C13C14101.4°60.0°
H121C12C13H131133.3°180.0°
H121C12C13H13223.9°60.0°
H122C12C13C148.1°60.0°
H122C12C13H131117.2°60.0°
H122C12C13H132133.4°180.0°
C14C13H131H132118.6°120.0°
C13C14C15H141125.3°119.9°
C13C14C15H142125.3°120.1°
C13C14H141H142117.9°120.1°
C13C14C15C16106.3°180.0°
C13C14C15C19133.6°60.6°
C13C14C15H1513.4°59.7°
H131C13C14C1555.0°60.1°
H131C13C14H141179.7°180.0°
H131C13C14H14270.2°60.0°
H132C13C14C1554.5°59.9°
H132C13C14H14170.8°60.0°
H132C13C14H142179.7°180.0°
C15C14H141H142117.8°119.9°
C14C15C16C19120.8°119.9°
C14C15C16H15119.0°120.3°
C14C15C19H15119.0°120.3°
C14C15C16C17179.6°175.4°
C14C15C16H16154.4°64.7°
C14C15C16H16255.1°55.4°
C14C15C19C18179.4°175.4°
C14C15C19H19155.3°55.5°
C14C15C19H19254.2°64.6°
H141C14C15C16128.4°60.0°
H141C14C15C198.3°179.5°
H141C14C15H15111.8°60.2°
H142C14C15C1618.9°59.9°
H142C14C15C19101.2°59.5°
H142C14C15H15138.7°179.9°
C16C15C19H15119.8°119.8°
C15C16C17H161125.3°119.9°
C15C16C17H162125.3°119.9°
C15C16H161H162118.6°120.1°
C15C16C17N1862.3°61.4°
C15C16C17H171172.4°58.7°
C15C16C17H17262.9°178.5°
C16C15C19C1858.3°55.5°
C16C15C19H191176.5°64.4°
C16C15C19H19267.0°175.5°
C19C15C16C1758.8°55.6°
C19C15C16H16166.5°175.5°
C19C15C16H162175.9°64.4°
C15C19C18N1861.0°61.4°
C15C19C18H191125.3°119.9°
C15C19C18H192125.3°120.0°
C15C19C18H181173.7°58.7°
C15C19C18H18264.3°178.5°
C15C19H191H192118.5°120.1°
H15C15C16C1761.4°64.3°
H15C15C16H161173.4°55.6°
H15C15C16H16263.9°175.7°
H15C15C19C1861.5°64.3°
H15C15C19H19163.7°175.8°
H15C15C19H192173.2°55.6°
C17C16H161H162118.6°120.2°
C16C17N18H171125.3°120.1°
C16C17N18H172125.2°120.1°
C16C17H171H172118.1°119.8°
C16C17N18C1864.4°65.6°
C16C17N18H1860.8°179.7°
H161C16C17N1862.9°178.7°
H161C16C17H17162.3°61.1°
H161C16C17H172171.8°58.6°
H162C16C17N18172.4°58.5°
H162C16C17H17147.1°178.7°
H162C16C17H17262.4°61.6°
N18C17H171H172118.1°119.8°
C17N18C18H18125.3°114.1°
C17N18C18C1963.8°65.6°
C17N18C18H181170.9°54.4°
C17N18C18H18261.5°174.2°
H171C17N18C18170.3°54.5°
H171C17N18H1864.4°59.6°
H172C17N18C1860.9°174.2°
H172C17N18H18173.9°60.2°
N18C18C19H181125.3°120.1°
N18C18C19H182125.3°120.1°
N18C18H181H182118.0°119.9°
N18C18C19H191173.7°58.6°
N18C18C19H19264.2°178.7°
H18N18C18C1961.5°179.7°
H18N18C18H18163.8°59.7°
H18N18C18H182173.3°60.2°
C19C18H181H182118.0°119.9°
C18C19H191H192118.4°120.1°
H181C18C19H19148.4°178.6°
H181C18C19H19261.1°61.3°
H182C18C19H19161.0°61.6°
H182C18C19H192170.5°58.6°

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon