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AG9

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
NH2CZsing1.47Å1.33Å
NH1CZsing1.47Å1.33Å
CZNEsing1.47Å1.33Å
NECDsing1.47Å1.46Å
CDCGsing1.53Å1.53Å
O2'C2'sing1.43Å1.42Å
CACBsing1.53Å1.54Å
CAN2sing1.46Å1.46Å
CGCBsing1.53Å1.54Å
O3'C3'sing1.43Å1.41Å
C2'C3'sing1.55Å1.52Å
C2'C1'sing1.54Å1.53Å
N2C2sing1.38Å1.36Å
C3'C4'sing1.54Å1.52Å
C1'O4'sing1.44Å1.41Å
C1'N1sing1.47Å1.49Å
C4'O4'sing1.44Å1.44Å
C4'C5'sing1.53Å1.50Å
C2N1sing1.38Å1.42Å
C2N3doub1.30Å1.36Å
N1C6sing1.39Å1.37Å
N3C4sing1.46Å1.34Å
C5'O5'sing1.43Å1.44Å
O5'Psing1.61Å1.59Å
C6C5doub1.32Å1.34Å
C4C5sing1.50Å1.43Å
C4N4sing1.47Å1.34Å
POP1doub1.48Å1.49Å
POP2sing1.61Å1.50Å
POP3sing1.61Å1.62Å
N2HN2sing0.97Å1.00Å
N4H1N4sing1.01Å1.00Å
N4H2N4sing1.01Å1.00Å
C5H5sing1.08Å1.08Å
C6H6sing1.08Å1.08Å
CAH1Asing1.09Å1.10Å
CAH2Asing1.09Å1.10Å
CBH1Bsing1.09Å1.10Å
CBH2Bsing1.09Å1.10Å
CDH1Dsing1.09Å1.10Å
CDH2Dsing1.09Å1.10Å
NEHNEsing1.01Å1.00Å
CGH1Gsing1.09Å1.10Å
CGH2Gsing1.09Å1.10Å
C1'H1'sing1.09Å1.10Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C4'H4'sing1.09Å1.10Å
C5'H15'sing1.09Å1.10Å
C5'H25'sing1.09Å1.10Å
NH1H1H1sing1.01Å1.00Å
NH1H2H1sing1.01Å1.00Å
NH2H1H2sing1.01Å1.00Å
NH2H2H2sing1.01Å1.00Å
OP2HOP2sing0.97Å0.95Å
OP3HOP3sing0.97Å0.95Å
CZHZsing1.09Å1.10Å
C4H4sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
NH2CZNH1119.6°109.5°
NH2CZNE120.4°109.5°
CZNH2H1H2109.5°111.0°
CZNH2H2H2109.5°111.0°
NH2CZHZ90.3°109.5°
NH1CZNE120.0°109.5°
CZNH1H1H1109.5°111.0°
CZNH1H2H1109.4°111.0°
NH1CZHZ90.3°109.5°
CZNECD124.7°111.0°
CZNEHNE105.5°111.0°
NECZHZ90.3°109.5°
NECDCG111.5°109.5°
NECDH1D109.0°109.5°
NECDH2D109.0°109.4°
CDNEHNE105.5°111.0°
CDCGCB114.2°109.5°
CGCDH1D108.9°109.5°
CGCDH2D109.0°109.4°
CDCGH1G108.3°109.5°
CDCGH2G108.3°109.5°
O2'C2'C3'114.0°110.5°
O2'C2'C1'107.7°110.5°
O2'C2'H2'112.3°110.6°
C2'O2'HO2'109.5°114.0°
CBCAN2111.6°109.5°
CACBCG116.2°109.5°
CBCAH1A109.0°109.4°
CBCAH2A108.9°109.4°
CACBH1B107.8°109.4°
CACBH2B107.8°109.4°
CAN2C2122.4°120.0°
CAN2HN2118.8°120.0°
N2CAH1A108.9°109.5°
N2CAH2A109.0°109.5°
CGCBH1B107.7°109.5°
CGCBH2B107.8°109.5°
CBCGH1G108.2°109.4°
CBCGH2G108.3°109.5°
O3'C3'C2'114.6°110.5°
O3'C3'C4'110.8°110.5°
O3'C3'H3'110.1°110.6°
C3'O3'HO3'109.5°114.1°
C3'C2'C1'100.8°104.0°
C2'C3'C4'103.9°104.1°
C3'C2'H2'110.6°110.5°
C2'C3'H3'108.5°110.5°
C2'C1'O4'108.8°104.8°
C2'C1'N1120.4°110.4°
C2'C1'H1'105.6°110.5°
C1'C2'H2'110.7°110.5°
N2C2N1119.7°119.5°
N2C2N3121.5°119.5°
C2N2HN2118.8°120.0°
C3'C4'O4'105.4°104.8°
C3'C4'C5'113.2°110.4°
C4'C3'H3'108.6°110.5°
C3'C4'H4'109.5°110.4°
O4'C1'N1108.2°110.3°
C1'O4'C4'109.7°105.2°
O4'C1'H1'107.0°110.4°
C1'N1C2119.6°120.3°
C1'N1C6120.2°120.3°
N1C1'H1'106.1°110.4°
O4'C4'C5'108.4°110.3°
O4'C4'H4'110.6°110.4°
C4'C5'O5'109.8°109.5°
C5'C4'H4'109.7°110.4°
C4'C5'H15'109.4°109.5°
C4'C5'H25'109.4°109.5°
N1C2N3118.8°120.9°
C2N1C6120.1°119.4°
C2N3C4120.2°122.6°
N1C6C5121.1°119.8°
N1C6H6119.4°120.1°
N3C4C5122.1°111.4°
N3C4N4117.7°109.1°
N3C4H490.0°109.1°
C5'O5'P121.1°123.0°
O5'C5'H15'109.4°109.5°
O5'C5'H25'109.4°109.5°
O5'POP1106.4°109.5°
O5'POP2107.8°109.5°
O5'POP3104.6°109.5°
C6C5C4117.7°121.3°
C6C5H5121.1°119.4°
C5C6H6119.4°120.1°
C5C4N4120.3°109.1°
C4C5H5121.2°119.3°
C5C4H490.0°109.1°
C4N4H1N4109.5°111.0°
C4N4H2N4109.5°111.0°
N4C4H490.0°109.0°
OP1POP2119.9°109.5°
OP1POP3108.6°109.4°
OP2POP3108.5°109.5°
POP2HOP2109.5°114.0°
POP3HOP3109.5°114.0°
H1N4N4H2N4109.5°111.0°
H1ACAH2A109.4°109.4°
H1BCBH2B109.5°109.4°
H1DCDH2D109.5°109.5°
H1GCGH2G109.5°109.4°
H15'C5'H25'109.5°109.4°
H1H1NH1H2H1109.5°111.0°
H1H2NH2H2H2109.5°111.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
NH2CZNH1NE178.9°120.0°
NH2CZNH1HZ90.6°120.0°
NH2CZNEHZ90.6°120.0°
NH2CZNECD1.4°75.1°
NH2CZNEHNE123.4°48.9°
NH2CZNH1H1H1180.0°60.0°
NH2CZNH1H2H160.0°176.1°
CZNH2H1H2H2H2120.0°123.9°
NH1CZNEHZ90.6°120.0°
NH1CZNECD179.7°165.0°
NH1CZNEHNE57.7°71.1°
CZNH1H1H1H2H1120.0°124.0°
NH1CZNH2H1H2180.0°60.0°
NH1CZNH2H2H260.0°176.0°
CZNECDHNE122.0°124.0°
CZNECDCG154.9°180.0°
CZNECDH1D34.6°60.0°
CZNECDH2D84.8°60.1°
NECZNH1H1H11.1°180.0°
NECZNH1H2H1121.1°56.1°
NECZNH2H1H21.2°59.9°
NECZNH2H2H2118.9°64.0°
NECDCGH1D120.3°120.1°
NECDCGH2D120.3°119.9°
NECDCGCB156.5°180.0°
NECDH1DH2D119.1°120.0°
NECDCGH1G35.8°60.1°
NECDCGH2G82.8°59.9°
CDNECZHZ89.2°44.9°
CDCGCBCA42.6°180.0°
CDCGCBH1G120.7°120.0°
CDCGCBH2G120.7°120.1°
CDCGCBH1B163.6°60.0°
CDCGCBH2B78.4°60.0°
CGCDH1DH2D119.1°120.0°
CGCDNEHNE83.0°56.0°
CDCGH1GH2G117.9°120.1°
O2'C2'C3'O3'38.8°0.0°
O2'C2'C3'C1'115.1°118.6°
O2'C2'C3'H2'127.8°122.7°
O2'C2'C1'H2'123.2°122.8°
O2'C2'C3'C4'82.2°118.6°
O2'C2'C1'O4'95.1°142.6°
O2'C2'C1'N1139.2°98.6°
O2'C2'C1'H1'19.4°23.7°
O2'C2'C3'H3'162.3°122.7°
CBCAN2H1A120.3°120.0°
CBCAN2H2A120.3°120.0°
CACBCGH1B121.0°120.0°
CACBCGH2B121.0°120.0°
CBCAN2C275.4°180.0°
CBCAN2HN2104.6°0.0°
CBCAH1AH2A119.0°119.9°
CACBH1BH2B117.0°119.9°
CACBCGH1G163.3°60.0°
CACBCGH2G78.1°59.9°
N2CACBCG41.5°180.0°
CAN2C2HN2180.0°180.0°
CAN2C2N1117.7°180.0°
CAN2C2N363.0°0.0°
N2CAH1AH2A119.1°120.1°
N2CACBH1B79.5°60.0°
N2CACBH2B162.5°60.0°
CGCBCAH1A78.8°60.0°
CGCBCAH2A161.8°60.0°
CGCBH1BH2B116.9°120.0°
CBCGCDH1D83.2°60.0°
CBCGCDH2D36.2°60.1°
CBCGH1GH2G117.8°119.9°
O3'C3'C2'C4'121.1°118.7°
O3'C3'C2'H3'123.5°122.7°
O3'C3'C2'C1'153.9°118.6°
O3'C3'C4'H3'121.1°122.8°
O3'C3'C4'O4'154.4°142.6°
O3'C3'C4'C5'87.4°98.6°
O3'C3'C2'H2'89.0°122.7°
O3'C3'C4'H4'35.4°23.8°
C3'C2'C1'H2'117.1°118.6°
C2'C3'C4'H3'115.4°118.6°
C3'C2'C1'O4'24.6°24.0°
C3'C2'C1'N1101.0°142.8°
C2'C3'C4'O4'30.8°24.0°
C2'C3'C4'C5'149.1°142.8°
C3'C2'C1'H1'139.1°94.9°
C3'C2'O2'HO2'180.0°61.5°
C2'C3'O3'HO3'180.0°61.4°
C2'C3'C4'H4'88.2°94.9°
C1'C2'C3'C4'32.9°0.0°
C2'C1'O4'N1132.4°118.8°
C2'C1'O4'H1'113.7°119.0°
C2'C1'N1H1'119.6°122.4°
C2'C1'O4'C4'6.1°40.6°
C2'C1'N1C272.8°118.4°
C2'C1'N1C6109.1°61.8°
C1'C2'O2'HO2'69.1°176.1°
C1'C2'C3'H3'82.6°118.7°
N2C2N1C1'2.0°17.6°
N2C2N1N3179.3°180.0°
N2C2N1C6179.9°162.6°
N2C2N3C4179.3°179.3°
C2N2CAH1A164.3°60.0°
C2N2CAH2A44.9°60.0°
C3'C4'O4'C1'15.6°40.6°
C3'C4'O4'C5'121.5°118.8°
C3'C4'O4'H4'118.3°118.9°
C3'C4'C5'H4'122.7°122.3°
C3'C4'C5'O5'149.3°175.0°
C4'C3'C2'H2'150.0°118.6°
C4'C3'O3'HO3'62.8°176.0°
C3'C4'C5'H15'90.7°55.0°
C3'C4'C5'H25'29.2°65.0°
O4'C1'N1H1'114.5°122.3°
C1'O4'C4'C5'137.0°159.4°
O4'C1'N1C2161.3°126.3°
O4'C1'N1C616.8°53.5°
O4'C1'C2'H2'141.7°94.6°
C1'O4'C4'H4'102.7°78.3°
N1C1'O4'C4'126.4°159.4°
C1'N1C2C6178.1°179.8°
C1'N1C2N3177.3°162.3°
C1'N1C6C5176.9°162.5°
C1'N1C6H63.1°17.5°
N1C1'C2'H2'16.1°24.1°
O4'C4'C5'H4'120.8°122.3°
O4'C4'C5'O5'32.8°69.6°
C4'O4'C1'H1'119.7°78.4°
O4'C4'C3'H3'84.6°94.6°
O4'C4'C5'H15'152.9°170.4°
O4'C4'C5'H25'87.3°50.4°
C4'C5'O5'H15'120.1°120.0°
C4'C5'O5'H25'120.0°120.0°
C4'C5'O5'P148.8°180.0°
C5'C4'C3'H3'33.7°24.2°
C4'C5'H15'H25'119.8°120.0°
N1C2N3C40.0°0.6°
C2N1C6C51.2°17.2°
N1C2N2HN262.3°0.0°
C2N1C6H6178.8°162.7°
C2N1C1'H1'46.8°4.0°
N3C2N1C60.8°17.5°
C2N3C4C50.5°16.5°
C2N3C4N4179.5°137.0°
N3C2N2HN2117.0°179.9°
C2N3C4H489.5°104.0°
N1C6C5H6180.0°179.9°
N1C6C5C40.7°0.4°
N1C6C5H5179.3°179.7°
C6N1C1'H1'131.3°175.8°
N3C4C5C60.1°16.3°
N3C4C5N4180.0°120.5°
N3C4C5H490.0°120.5°
N3C4N4H490.0°119.0°
N3C4N4H1N4180.0°60.0°
N3C4N4H2N460.0°176.1°
N3C4C5H5179.9°163.8°
C5'O5'POP169.7°55.0°
C5'O5'POP2160.5°175.0°
C5'O5'POP345.1°65.0°
O5'C5'C4'H4'88.0°52.7°
O5'C5'H15'H25'119.9°120.0°
O5'POP1OP2122.4°120.0°
O5'POP1OP3112.1°120.0°
O5'POP2OP3112.8°120.0°
PO5'C5'H15'91.2°60.0°
PO5'C5'H25'28.7°60.0°
O5'POP2HOP2121.7°180.0°
O5'POP3HOP3113.2°60.0°
C6C5C4H5180.0°179.9°
C6C5C4N4179.9°136.8°
C6C5C4H489.8°104.2°
C5C4N4H490.0°119.1°
C5C4N4H1N40.1°178.1°
C5C4N4H2N4120.0°54.2°
C4C5C6H6179.3°179.7°
C4N4H1N4H2N4120.0°123.9°
N4C4C5H50.1°43.3°
OP1POP2OP3125.5°120.0°
OP1POP2HOP20.0°60.0°
OP1POP3HOP30.0°180.0°
OP2POP3HOP3131.9°60.0°
OP3POP2HOP2125.5°60.0°
HN2N2CAH1A15.7°120.0°
HN2N2CAH2A135.1°120.0°
H1N4N4C4H490.0°59.0°
H2N4N4C4H4150.0°64.9°
H5C5C6H60.7°0.2°
H5C5C4H490.1°75.7°
H1ACACBH1B160.2°180.0°
H1ACACBH2B42.1°60.1°
H2ACACBH1B40.9°60.1°
H2ACACBH2B77.2°180.0°
H1BCBCGH1G75.7°180.0°
H1BCBCGH2G42.9°60.1°
H2BCBCGH1G42.3°60.0°
H2BCBCGH2G160.9°179.9°
H1DCDNEHNE156.7°176.1°
H1DCDCGH1G156.1°60.0°
H1DCDCGH2G37.5°180.0°
H2DCDNEHNE37.3°63.9°
H2DCDCGH1G84.5°180.0°
H2DCDCGH2G156.9°60.0°
HNENECZHZ32.8°168.9°
H1'C1'C2'H2'103.8°146.5°
H2'C2'O2'HO2'53.1°61.2°
H2'C2'C3'H3'34.5°0.0°
H3'C3'O3'HO3'57.4°61.2°
H3'C3'C4'H4'156.5°146.5°
H4'C4'C5'H15'32.0°67.3°
H4'C4'C5'H25'151.9°172.7°
H1H1NH1CZHZ89.4°60.0°
H2H1NH1CZHZ30.6°63.9°
H1H2NH2CZHZ89.4°180.0°
H2H2NH2CZHZ150.5°56.0°

219869

PDB entries from 2024-05-15

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