AFO

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	O1	sing	1.43Å	1.43Å
C1	C2	sing	1.54Å	1.52Å
C1	O4	sing	1.44Å	1.43Å
O1	C1'	sing	1.43Å	1.42Å
C2	O2	sing	1.43Å	1.43Å
C2	C3	sing	1.55Å	1.52Å
C3	O3	sing	1.43Å	1.42Å
C3	C4	sing	1.55Å	1.52Å
C4	O4	sing	1.44Å	1.43Å
C4	C5	sing	1.53Å	1.53Å
C5	O5	sing	1.43Å	1.44Å
C1'	C2'	sing	1.53Å	1.52Å
C2'	C3'	sing	1.53Å	1.53Å
C3'	C4'	sing	1.53Å	1.52Å
C4'	C5'	sing	1.53Å	1.53Å
C5'	C6'	sing	1.53Å	1.53Å
C6'	C7'	sing	1.53Å	1.53Å
C7'	C8'	sing	1.53Å	1.51Å
C1	H1	sing	1.09Å	1.10Å
C2	H2	sing	1.09Å	1.10Å
O2	HO2	sing	0.97Å	0.95Å
C3	H3	sing	1.09Å	1.10Å
O3	HO3	sing	0.97Å	0.95Å
C4	H4	sing	1.09Å	1.10Å
C5	H51	sing	1.09Å	1.10Å
C5	H52	sing	1.09Å	1.10Å
O5	HO5	sing	0.97Å	0.95Å
C1'	H1'	sing	1.09Å	1.10Å
C1'	H1'A	sing	1.09Å	1.10Å
C2'	H2'	sing	1.09Å	1.10Å
C2'	H2'A	sing	1.09Å	1.10Å
C3'	H3'	sing	1.09Å	1.10Å
C3'	H3'A	sing	1.09Å	1.10Å
C4'	H4'	sing	1.09Å	1.10Å
C4'	H4'A	sing	1.09Å	1.10Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5'A	sing	1.09Å	1.10Å
C6'	H6'	sing	1.09Å	1.10Å
C6'	H6'A	sing	1.09Å	1.10Å
C7'	H7'	sing	1.09Å	1.10Å
C7'	H7'A	sing	1.09Å	1.10Å
C8'	H8'	sing	1.09Å	1.10Å
C8'	H8'A	sing	1.09Å	1.10Å
C8'	H8'B	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C1	C2	106.8°	109.9°
O1	C1	O4	109.5°	109.8°
C1	O1	C1'	114.0°	114.0°
O1	C1	H1	110.3°	109.9°
C2	C1	O4	106.5°	107.3°
C1	C2	O2	112.1°	110.5°
C1	C2	C3	106.0°	104.2°
C2	C1	H1	113.0°	109.9°
C1	C2	H2	110.7°	110.5°
C1	O4	C4	109.4°	107.0°
O4	C1	H1	110.6°	110.0°
O1	C1'	C2'	107.3°	109.5°
O1	C1'	H1'	110.2°	109.5°
O1	C1'	H1'A	110.2°	109.4°
O2	C2	C3	111.4°	110.5°
O2	C2	H2	105.2°	110.4°
C2	O2	HO2	109.5°	114.0°
C2	C3	O3	108.3°	110.9°
C2	C3	C4	105.3°	102.1°
C3	C2	H2	111.5°	110.6°
C2	C3	H3	112.8°	110.9°
O3	C3	C4	109.2°	110.9°
O3	C3	H3	109.2°	110.8°
C3	O3	HO3	109.5°	114.0°
C3	C4	O4	106.6°	103.4°
C3	C4	C5	113.3°	110.6°
C4	C3	H3	111.9°	111.0°
C3	C4	H4	109.6°	110.6°
O4	C4	C5	111.5°	110.6°
O4	C4	H4	111.5°	110.6°
C4	C5	O5	109.4°	109.5°
C5	C4	H4	104.5°	110.7°
C4	C5	H51	109.5°	109.4°
C4	C5	H52	109.5°	109.4°
O5	C5	H51	109.5°	109.5°
O5	C5	H52	109.5°	109.5°
C5	O5	HO5	109.5°	113.9°
C1'	C2'	C3'	112.5°	109.5°
C2'	C1'	H1'	110.2°	109.5°
C2'	C1'	H1'A	110.2°	109.5°
C1'	C2'	H2'	108.5°	109.5°
C1'	C2'	H2'A	108.5°	109.5°
C2'	C3'	C4'	109.2°	109.5°
C3'	C2'	H2'	108.5°	109.4°
C3'	C2'	H2'A	108.5°	109.5°
C2'	C3'	H3'	109.5°	109.4°
C2'	C3'	H3'A	109.6°	109.5°
C3'	C4'	C5'	111.4°	109.5°
C4'	C3'	H3'	109.6°	109.5°
C4'	C3'	H3'A	109.5°	109.5°
C3'	C4'	H4'	108.8°	109.5°
C3'	C4'	H4'A	108.9°	109.5°
C4'	C5'	C6'	112.9°	109.5°
C5'	C4'	H4'	108.8°	109.4°
C5'	C4'	H4'A	108.8°	109.5°
C4'	C5'	H5'	108.3°	109.4°
C4'	C5'	H5'A	108.4°	109.4°
C5'	C6'	C7'	110.8°	109.5°
C6'	C5'	H5'	108.3°	109.5°
C6'	C5'	H5'A	108.3°	109.5°
C5'	C6'	H6'	109.0°	109.5°
C5'	C6'	H6'A	109.0°	109.5°
C6'	C7'	C8'	111.3°	109.5°
C7'	C6'	H6'	109.0°	109.4°
C7'	C6'	H6'A	109.1°	109.4°
C6'	C7'	H7'	108.8°	109.4°
C6'	C7'	H7'A	108.9°	109.5°
C8'	C7'	H7'	108.8°	109.5°
C8'	C7'	H7'A	108.8°	109.5°
C7'	C8'	H8'	109.5°	109.5°
C7'	C8'	H8'A	109.5°	109.5°
C7'	C8'	H8'B	109.5°	109.5°
H51	C5	H52	109.5°	109.5°
H1'	C1'	H1'A	108.7°	109.5°
H2'	C2'	H2'A	110.5°	109.4°
H3'	C3'	H3'A	109.4°	109.4°
H4'	C4'	H4'A	110.1°	109.4°
H5'	C5'	H5'A	110.6°	109.5°
H6'	C6'	H6'A	109.9°	109.5°
H7'	C7'	H7'A	110.1°	109.5°
H8'	C8'	H8'A	109.5°	109.4°
H8'	C8'	H8'B	109.4°	109.4°
H8'A	C8'	H8'B	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	C2	O4	116.9°	119.4°
O1	C1	C2	H1	121.5°	121.1°
O1	C1	O4	H1	121.7°	121.1°
O1	C1	C2	O2	133.7°	124.0°
O1	C1	C2	C3	104.5°	117.4°
O1	C1	O4	C4	91.3°	92.9°
C1	O1	C1'	C2'	168.5°	180.0°
O1	C1	C2	H2	16.5°	1.5°
C1	O1	C1'	H1'	48.5°	60.0°
C1	O1	C1'	H1'A	71.5°	60.0°
C2	C1	O4	H1	123.2°	119.5°
C2	C1	O1	C1'	175.9°	170.0°
C1	C2	O2	C3	118.6°	114.8°
C1	C2	O2	H2	120.4°	122.5°
C1	C2	C3	H2	120.6°	118.8°
C1	C2	C3	O3	119.4°	139.1°
C1	C2	C3	C4	2.6°	20.9°
C2	C1	O4	C4	23.8°	26.5°
C1	C2	O2	HO2	180.0°	61.4°
C1	C2	C3	H3	119.7°	97.4°
O4	C1	O1	C1'	61.0°	72.2°
O4	C1	C2	O2	109.4°	116.7°
O4	C1	C2	C3	12.4°	2.0°
C1	O4	C4	C3	25.6°	40.1°
C1	O4	C4	C5	149.7°	158.5°
O4	C1	C2	H2	133.4°	120.8°
C1	O4	C4	H4	94.0°	78.5°
O1	C1'	C2'	H1'	120.0°	120.0°
O1	C1'	C2'	H1'A	120.0°	119.9°
O1	C1'	C2'	C3'	158.4°	180.0°
C1'	O1	C1	H1	60.9°	48.9°
O1	C1'	H1'	H1'A	120.9°	120.0°
O1	C1'	C2'	H2'	38.4°	60.0°
O1	C1'	C2'	H2'A	81.6°	60.0°
O2	C2	C3	H2	117.2°	122.6°
O2	C2	C3	O3	118.4°	102.2°
O2	C2	C3	C4	124.9°	139.6°
O2	C2	C1	H1	12.2°	2.9°
O2	C2	C3	H3	2.5°	21.3°
C2	C3	O3	C4	114.2°	112.7°
C2	C3	O3	H3	123.1°	123.6°
C2	C3	C4	H3	122.9°	118.2°
C2	C3	C4	O4	16.7°	37.0°
C2	C3	C4	C5	139.7°	155.5°
C3	C2	C1	H1	134.0°	121.6°
C3	C2	O2	HO2	61.4°	176.2°
C2	C3	O3	HO3	180.0°	61.4°
C2	C3	C4	H4	104.1°	81.5°
O3	C3	C4	H3	121.0°	123.6°
O3	C3	C4	O4	132.8°	155.2°
O3	C3	C4	C5	104.2°	86.3°
O3	C3	C2	H2	1.2°	20.4°
O3	C3	C4	H4	12.1°	36.7°
C3	C4	O4	C5	124.1°	118.5°
C3	C4	O4	H4	119.6°	118.5°
C3	C4	C5	H4	119.3°	123.0°
C3	C4	C5	O5	159.5°	175.0°
C4	C3	C2	H2	117.9°	97.8°
C4	C3	O3	HO3	65.8°	174.1°
C3	C4	C5	H51	39.5°	55.0°
C3	C4	C5	H52	80.5°	65.0°
O4	C4	C5	H4	120.5°	123.0°
O4	C4	C5	O5	80.3°	71.0°
C4	O4	C1	H1	147.0°	146.0°
O4	C4	C3	H3	106.2°	81.2°
O4	C4	C5	H51	159.7°	169.0°
O4	C4	C5	H52	39.7°	49.1°
C4	C5	O5	H51	120.0°	120.0°
C4	C5	O5	H52	120.0°	120.0°
C5	C4	C3	H3	16.8°	37.3°
C4	C5	H51	H52	120.0°	120.0°
C4	C5	O5	HO5	180.0°	180.0°
O5	C5	C4	H4	40.2°	52.0°
O5	C5	H51	H52	120.1°	120.1°
C1'	C2'	C3'	H2'	120.0°	120.0°
C1'	C2'	C3'	H2'A	120.0°	120.0°
C1'	C2'	C3'	C4'	169.9°	180.0°
C2'	C1'	H1'	H1'A	120.9°	120.0°
C1'	C2'	H2'	H2'A	118.8°	120.0°
C1'	C2'	C3'	H3'	49.9°	60.0°
C1'	C2'	C3'	H3'A	70.1°	60.0°
C2'	C3'	C4'	H3'	120.0°	120.0°
C2'	C3'	C4'	H3'A	120.0°	120.0°
C2'	C3'	C4'	C5'	22.9°	180.0°
C3'	C2'	C1'	H1'	81.7°	60.0°
C3'	C2'	C1'	H1'A	38.3°	60.0°
C3'	C2'	H2'	H2'A	118.8°	120.0°
C2'	C3'	H3'	H3'A	120.1°	120.0°
C2'	C3'	C4'	H4'	97.1°	60.0°
C2'	C3'	C4'	H4'A	142.9°	60.0°
C3'	C4'	C5'	H4'	120.0°	120.0°
C3'	C4'	C5'	H4'A	120.0°	120.1°
C3'	C4'	C5'	C6'	76.1°	180.0°
C4'	C3'	C2'	H2'	70.1°	60.0°
C4'	C3'	C2'	H2'A	49.9°	59.9°
C4'	C3'	H3'	H3'A	120.1°	120.0°
C3'	C4'	H4'	H4'A	119.3°	120.0°
C3'	C4'	C5'	H5'	43.9°	60.0°
C3'	C4'	C5'	H5'A	163.9°	60.0°
C4'	C5'	C6'	H5'	120.0°	120.0°
C4'	C5'	C6'	H5'A	120.0°	120.0°
C4'	C5'	C6'	C7'	170.8°	180.0°
C5'	C4'	C3'	H3'	142.9°	60.0°
C5'	C4'	C3'	H3'A	97.0°	60.0°
C5'	C4'	H4'	H4'A	119.2°	120.0°
C4'	C5'	H5'	H5'A	118.6°	120.0°
C4'	C5'	C6'	H6'	69.2°	60.0°
C4'	C5'	C6'	H6'A	50.7°	60.0°
C5'	C6'	C7'	H6'	120.0°	120.0°
C5'	C6'	C7'	H6'A	120.0°	120.0°
C5'	C6'	C7'	C8'	176.1°	180.0°
C6'	C5'	C4'	H4'	163.9°	60.0°
C6'	C5'	C4'	H4'A	43.9°	60.0°
C6'	C5'	H5'	H5'A	118.6°	120.0°
C5'	C6'	H6'	H6'A	119.4°	120.0°
C5'	C6'	C7'	H7'	63.9°	60.0°
C5'	C6'	C7'	H7'A	56.1°	60.0°
C6'	C7'	C8'	H7'	120.0°	120.0°
C6'	C7'	C8'	H7'A	120.0°	120.0°
C7'	C6'	C5'	H5'	50.8°	60.0°
C7'	C6'	C5'	H5'A	69.2°	60.0°
C7'	C6'	H6'	H6'A	119.5°	120.0°
C6'	C7'	H7'	H7'A	119.3°	120.0°
C6'	C7'	C8'	H8'	180.0°	60.0°
C6'	C7'	C8'	H8'A	60.0°	60.0°
C6'	C7'	C8'	H8'B	60.0°	180.0°
C8'	C7'	C6'	H6'	56.1°	60.0°
C8'	C7'	C6'	H6'A	63.9°	60.0°
C8'	C7'	H7'	H7'A	119.2°	120.0°
C7'	C8'	H8'	H8'A	120.0°	120.0°
C7'	C8'	H8'	H8'B	120.0°	120.0°
C7'	C8'	H8'A	H8'B	120.0°	120.0°
H1	C1	C2	H2	105.0°	119.6°
H2	C2	O2	HO2	59.6°	61.1°
H2	C2	C3	H3	119.7°	143.9°
H3	C3	O3	HO3	56.9°	62.2°
H3	C3	C4	H4	133.1°	160.3°
H4	C4	C5	H51	79.7°	68.0°
H4	C4	C5	H52	160.3°	172.1°
H51	C5	O5	HO5	60.0°	60.0°
H52	C5	O5	HO5	60.0°	60.0°
H1'	C1'	C2'	H2'	158.4°	180.0°
H1'	C1'	C2'	H2'A	38.4°	60.0°
H1'A	C1'	C2'	H2'	81.6°	60.0°
H1'A	C1'	C2'	H2'A	158.3°	180.0°
H2'	C2'	C3'	H3'	169.9°	180.0°
H2'	C2'	C3'	H3'A	49.9°	60.0°
H2'A	C2'	C3'	H3'	70.1°	60.0°
H2'A	C2'	C3'	H3'A	169.9°	180.0°
H3'	C3'	C4'	H4'	22.9°	180.0°
H3'	C3'	C4'	H4'A	97.1°	60.0°
H3'A	C3'	C4'	H4'	143.0°	60.0°
H3'A	C3'	C4'	H4'A	22.9°	180.0°
H4'	C4'	C5'	H5'	76.1°	180.0°
H4'	C4'	C5'	H5'A	43.9°	60.0°
H4'A	C4'	C5'	H5'	163.9°	60.0°
H4'A	C4'	C5'	H5'A	76.1°	180.0°
H5'	C5'	C6'	H6'	170.8°	180.0°
H5'	C5'	C6'	H6'A	69.2°	60.0°
H5'A	C5'	C6'	H6'	50.7°	60.0°
H5'A	C5'	C6'	H6'A	170.7°	180.0°
H6'	C6'	C7'	H7'	176.1°	180.0°
H6'	C6'	C7'	H7'A	63.9°	60.0°
H6'A	C6'	C7'	H7'	56.1°	60.0°
H6'A	C6'	C7'	H7'A	176.1°	180.0°
H7'	C7'	C8'	H8'	60.0°	180.0°
H7'	C7'	C8'	H8'A	180.0°	60.0°
H7'	C7'	C8'	H8'B	60.0°	60.0°
H7'A	C7'	C8'	H8'	60.0°	60.0°
H7'A	C7'	C8'	H8'A	60.0°	180.0°
H7'A	C7'	C8'	H8'B	180.0°	60.0°
H8'	C8'	H8'A	H8'B	120.0°	119.9°

Definition date:	2010-12-06
Last modified:	2020-07-17
Release status:	REL
Processing site:	RCSB
Derived from:	3PTY