Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

AFH

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N9C8sing1.36Å1.36ÅAromatic
N9C4sing1.37Å1.32ÅAromatic
N9C1Dsing1.47Å1.51Å
C8N7doub1.30Å1.32ÅAromatic
C8H8sing1.08Å1.08Å
N7C5sing1.35Å1.32ÅAromatic
C5C6sing1.40Å1.44ÅAromatic
C5C4doub1.41Å1.45ÅAromatic
C6N6sing1.38Å1.33Å
C6N1doub1.33Å1.42ÅAromatic
N6HN61sing0.97Å1.00Å
N6HN62sing0.97Å1.00Å
N1C2sing1.32Å1.38ÅAromatic
C2N3doub1.32Å1.39ÅAromatic
C2H2sing1.08Å1.08Å
N3C4sing1.33Å1.40ÅAromatic
C1DC2Dsing1.54Å1.53Å
C1DO4Dsing1.44Å1.42Å
C1DH1Dsing1.09Å1.10Å
C2DO2'sing1.43Å1.43Å
C2DC3Dsing1.55Å1.51Å
C2DH2Dsing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C3DC4Dsing1.54Å1.47Å
C3DO3Dsing1.43Å1.44Å
C3DH3Dsing1.09Å1.10Å
C4DO4Dsing1.44Å1.44Å
C4DC5Dsing1.53Å1.52Å
C4DH4Dsing1.09Å1.10Å
O3DHO3Asing0.97Å0.95Å
C5DO5Dsing1.43Å1.47Å
C5DH5'1sing1.09Å1.10Å
C5DH5'2sing1.09Å1.10Å
O5DPAsing1.61Å1.56Å
PAO1Adoub1.48Å1.41Å
PAO2Asing1.61Å1.46Å
PAO3Asing1.61Å1.53Å
O2AHO2Asing0.97Å0.95Å
O3APBsing1.61Å1.49Å
PBO1Bdoub1.48Å1.50Å
PBO2Bsing1.61Å1.43Å
PBO3Bsing1.61Å1.62Å
O2BHO2Bsing0.97Å0.95Å
O3BC1'sing1.43Å1.28Å
C1'C2'sing1.53Å1.54Å
C1'O5'sing1.43Å1.47Å
C1'H1'sing1.09Å1.10Å
C2'C3'sing1.53Å1.55Å
C2'Fsing1.40Å1.41Å
C2'H2'sing1.09Å1.10Å
C3'C4'sing1.53Å1.54Å
C3'O3'sing1.43Å1.43Å
C3'H3'sing1.09Å1.10Å
C4'C5'sing1.53Å1.55Å
C4'O4'sing1.43Å1.42Å
C4'H4'sing1.09Å1.10Å
C5'C6'sing1.53Å1.57Å
C5'O5'sing1.43Å1.49Å
C5'H5'sing1.09Å1.10Å
C6'C7'sing1.53Å1.56Å
C6'O6'sing1.43Å1.43Å
C6'H6'sing1.09Å1.10Å
C7'O7'sing1.43Å1.43Å
C7'H7'1sing1.09Å1.10Å
C7'H7'2sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
O4'HO4'sing0.97Å0.95Å
O6'HO6'sing0.97Å0.95Å
O7'HO7'sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C8N9C4108.1°107.5°
C8N9C1D128.3°126.3°
N9C8N7110.1°110.0°
N9C8H8125.0°125.0°
C4N9C1D123.6°126.2°
N9C4C5106.0°106.0°
N9C4N3134.6°134.9°
N9C1DC2D112.1°110.4°
N9C1DO4D112.5°110.3°
N9C1DH1D104.1°110.4°
N7C8H8124.9°125.0°
C8N7C5108.6°109.5°
N7C5C6136.5°134.7°
N7C5C4107.3°107.1°
C6C5C4116.2°118.1°
C5C6N6118.3°120.8°
C5C6N1121.1°118.5°
C5C4N3119.5°119.1°
N6C6N1120.6°120.7°
C6N6HN61125.6°120.0°
C6N6HN62108.9°120.0°
C6N1C2121.5°121.2°
HN61N6HN62125.6°120.0°
N1C2N3117.7°122.5°
N1C2H2121.1°118.8°
N3C2H2121.1°118.8°
C2N3C4123.9°120.6°
C2DC1DO4D104.6°104.9°
C2DC1DH1D112.1°110.4°
C1DC2DO2'115.6°110.8°
C1DC2DC3D102.5°104.0°
C1DC2DH2D112.6°110.4°
O4DC1DH1D111.7°110.4°
C1DO4DC4D108.0°105.3°
O2'C2DC3D115.4°110.5°
O2'C2DH2D98.7°110.4°
C2DO2'HO2'109.5°106.8°
C3DC2DH2D112.7°110.5°
C2DC3DC4D102.1°104.1°
C2DC3DO3D113.8°110.6°
C2DC3DH3D111.5°110.6°
C4DC3DO3D109.5°110.5°
C4DC3DH3D115.8°110.5°
C3DC4DO4D109.3°104.8°
C3DC4DC5D106.2°110.5°
C3DC4DH4D113.9°110.3°
O3DC3DH3D104.5°110.5°
C3DO3DHO3A109.5°106.8°
O4DC4DC5D115.4°110.4°
O4DC4DH4D104.5°110.4°
C5DC4DH4D107.7°110.3°
C4DC5DO5D109.1°109.5°
C4DC5DH5'1109.7°109.5°
C4DC5DH5'2109.6°109.5°
O5DC5DH5'1109.7°109.5°
O5DC5DH5'2109.6°109.4°
C5DO5DPA127.4°106.8°
H5'1C5DH5'2109.2°109.5°
O5DPAO1A110.4°109.5°
O5DPAO2A113.4°109.5°
O5DPAO3A101.6°109.4°
O1APAO2A107.7°109.5°
O1APAO3A106.6°109.5°
O2APAO3A116.8°109.5°
PAO2AHO2A109.5°106.8°
PAO3APB137.4°106.8°
O3APBO1B111.4°109.5°
O3APBO2B105.9°109.5°
O3APBO3B102.8°109.5°
O1BPBO2B110.6°109.5°
O1BPBO3B116.5°109.5°
O2BPBO3B108.9°109.4°
PBO2BHO2B109.5°106.8°
PBO3BC1'119.4°106.8°
O3BC1'C2'113.3°109.4°
O3BC1'O5'105.7°109.4°
O3BC1'H1'110.7°109.5°
C2'C1'O5'112.8°109.8°
C2'C1'H1'103.3°109.4°
C1'C2'C3'108.1°109.0°
C1'C2'F109.6°109.6°
C1'C2'H2'110.7°109.6°
O5'C1'H1'111.3°109.4°
C1'O5'C5'113.0°107.6°
C3'C2'F110.5°109.6°
C3'C2'H2'109.8°109.5°
C2'C3'C4'106.7°108.6°
C2'C3'O3'109.8°109.7°
C2'C3'H3'111.3°109.7°
FC2'H2'108.2°109.6°
C4'C3'O3'110.4°109.6°
C4'C3'H3'110.8°109.6°
C3'C4'C5'110.6°109.1°
C3'C4'O4'111.5°109.6°
C3'C4'H4'106.5°109.5°
O3'C3'H3'107.8°109.6°
C3'O3'HO3'109.5°106.7°
C5'C4'O4'106.8°109.6°
C5'C4'H4'111.2°109.5°
C4'C5'C6'115.1°109.4°
C4'C5'O5'109.9°109.8°
C4'C5'H5'104.7°109.4°
O4'C4'H4'110.3°109.5°
C4'O4'HO4'109.5°106.8°
C6'C5'O5'107.8°109.4°
C6'C5'H5'107.0°109.4°
C5'C6'C7'116.0°109.5°
C5'C6'O6'108.5°109.5°
C5'C6'H6'105.5°109.5°
O5'C5'H5'112.5°109.4°
C7'C6'O6'109.0°109.5°
C7'C6'H6'104.9°109.5°
C6'C7'O7'116.6°109.4°
C6'C7'H7'1105.5°109.4°
C6'C7'H7'2107.2°109.5°
O6'C6'H6'113.0°109.5°
C6'O6'HO6'109.5°106.8°
O7'C7'H7'1105.5°109.4°
O7'C7'H7'2107.2°109.5°
C7'O7'HO7'109.5°106.7°
H7'1C7'H7'2115.2°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C8N9C4C1D180.0°180.0°
N9C8N7H8180.0°180.0°
N9C8N7C50.2°0.2°
C8N9C4C50.1°0.2°
C8N9C4N3179.7°180.0°
C8N9C1DC2D55.6°93.4°
C8N9C1DO4D62.0°22.1°
C8N9C1DH1D176.9°144.3°
C4N9C8N70.2°0.0°
C4N9C8H8179.8°180.0°
N9C4C5N70.0°0.4°
N9C4C5C6179.7°179.6°
N9C4C5N3179.9°179.8°
N9C4N3C2180.0°180.0°
C4N9C1DC2D124.5°86.5°
C4N9C1DO4D118.0°158.0°
C4N9C1DH1D3.1°35.7°
C1DN9C8N7179.8°179.9°
C1DN9C8H80.1°0.1°
C1DN9C4C5179.9°179.7°
C1DN9C4N30.2°0.1°
N9C1DC2DO4D122.2°118.9°
N9C1DC2DH1D116.6°122.3°
N9C1DO4DH1D116.6°122.2°
N9C1DC2DO2'75.9°98.6°
N9C1DC2DC3D157.7°142.7°
N9C1DC2DH2D36.4°24.1°
N9C1DO4DC4D144.1°159.3°
C8N7C5C6179.7°179.5°
C8N7C5C40.1°0.4°
H8C8N7C5179.8°179.8°
N7C5C6C4179.6°179.0°
N7C5C6N60.2°0.7°
N7C5C6N1180.0°179.6°
N7C5C4N3179.9°179.8°
C5C6N6N1179.8°179.7°
C5C6N6HN610.0°179.7°
C5C6N6HN62180.0°0.5°
C5C6N1C20.3°0.3°
C6C5C4N30.4°0.5°
C4C5C6N6179.7°179.7°
C4C5C6N10.5°0.6°
C5C4N3C20.2°0.2°
C6N6HN61HN62180.0°179.8°
N6C6N1C2179.9°180.0°
N1C6N6HN61179.8°0.1°
N1C6N6HN620.2°179.8°
C6N1C2N30.0°0.0°
C6N1C2H2180.0°180.0°
N1C2N3H2180.0°179.9°
N1C2N3C40.0°0.0°
H2C2N3C4179.9°179.9°
C2DC1DO4DH1D121.5°118.9°
C1DC2DO2'C3D119.5°114.7°
C1DC2DO2'H2D120.2°122.7°
C1DC2DC3DH2D121.2°118.5°
C1DC2DO2'HO2'6.2°176.2°
C1DC2DC3DC4D34.2°0.1°
C1DC2DC3DO3D83.7°118.8°
C1DC2DC3DH3D158.4°118.5°
C2DC1DO4DC4D22.3°40.4°
O4DC1DC2DO2'161.9°142.6°
O4DC1DC2DC3D35.5°23.8°
O4DC1DC2DH2D85.8°94.8°
C1DO4DC4DC3D0.2°40.5°
C1DO4DC4DC5D119.8°159.4°
C1DO4DC4DH4D122.1°78.3°
H1DC1DC2DO2'40.7°23.7°
H1DC1DC2DC3D85.7°95.0°
H1DC1DC2DH2D153.0°146.4°
H1DC1DO4DC4D99.2°78.4°
O2'C2DC3DH2D112.3°122.5°
O2'C2DC3DC4D160.6°118.8°
O2'C2DC3DO3D42.8°0.1°
O2'C2DC3DH3D75.1°122.5°
C3DC2DO2'HO2'113.3°61.5°
C2DC3DC4DO3D120.9°118.7°
C2DC3DC4DH3D121.4°118.7°
C2DC3DO3DH3D121.9°122.8°
C2DC3DC4DO4D22.1°24.0°
C2DC3DC4DC5D103.0°142.9°
C2DC3DC4DH4D138.6°94.8°
C2DC3DO3DHO3A72.7°65.3°
H2DC2DO2'HO2'126.4°61.1°
H2DC2DC3DC4D87.0°118.7°
H2DC2DC3DO3D155.1°122.7°
H2DC2DC3DH3D37.2°0.0°
C4DC3DO3DH3D124.6°122.6°
C3DC4DO4DC5D119.7°119.0°
C3DC4DO4DH4D122.3°118.8°
C3DC4DC5DH4D122.4°122.3°
C4DC3DO3DHO3A40.9°180.0°
C3DC4DC5DO5D78.7°178.1°
C3DC4DC5DH5'1161.1°58.1°
C3DC4DC5DH5'241.3°61.9°
O3DC3DC4DO4D98.8°142.8°
O3DC3DC4DC5D136.0°98.3°
O3DC3DC4DH4D17.6°23.9°
H3DC3DC4DO4D143.5°94.7°
H3DC3DC4DC5D18.3°24.2°
H3DC3DC4DH4D100.1°146.5°
H3DC3DO3DHO3A165.4°57.5°
O4DC4DC5DH4D116.2°122.2°
O4DC4DC5DO5D159.9°66.4°
O4DC4DC5DH5'139.8°173.6°
O4DC4DC5DH5'280.1°53.5°
C4DC5DO5DH5'1120.2°120.0°
C4DC5DO5DH5'2120.0°120.0°
C4DC5DH5'1H5'2120.1°120.0°
C4DC5DO5DPA112.9°180.0°
H4DC4DC5DO5D43.7°55.8°
H4DC4DC5DH5'176.5°64.2°
H4DC4DC5DH5'2163.7°175.8°
O5DC5DH5'1H5'2120.1°119.9°
C5DO5DPAO1A158.3°55.0°
C5DO5DPAO2A80.7°65.0°
C5DO5DPAO3A45.5°175.0°
H5'1C5DO5DPA7.3°60.0°
H5'2C5DO5DPA127.1°60.0°
O5DPAO1AO2A124.3°120.0°
O5DPAO1AO3A109.5°120.0°
O5DPAO2AO3A117.7°120.0°
O5DPAO2AHO2A48.3°60.0°
O5DPAO3APB170.0°160.0°
O1APAO2AO3A119.8°120.0°
O1APAO2AHO2A170.8°180.0°
O1APAO3APB74.4°40.0°
O2APAO3APB46.0°80.0°
O3APAO2AHO2A69.4°60.0°
PAO3APBO1B125.1°40.0°
PAO3APBO2B114.6°80.0°
PAO3APBO3B0.3°160.0°
O3APBO1BO2B117.5°120.0°
O3APBO1BO3B117.4°120.0°
O3APBO2BO3B109.9°120.0°
O3APBO2BHO2B82.7°59.9°
O3APBO3BC1'155.4°175.0°
O1BPBO2BO3B129.2°120.0°
O1BPBO2BHO2B38.2°180.0°
O1BPBO3BC1'33.4°55.0°
O2BPBO3BC1'92.5°65.0°
O3BPBO2BHO2B167.4°60.0°
PBO3BC1'C2'130.6°149.9°
PBO3BC1'O5'105.5°89.9°
PBO3BC1'H1'15.1°30.0°
O3BC1'C2'O5'120.0°120.1°
O3BC1'C2'H1'119.8°119.9°
O3BC1'O5'H1'120.2°119.9°
O3BC1'C2'C3'179.4°178.6°
O3BC1'C2'F60.2°58.7°
O3BC1'C2'H2'59.1°61.5°
O3BC1'O5'C5'179.7°172.3°
C2'C1'O5'H1'115.5°120.0°
C1'C2'C3'F119.9°119.9°
C1'C2'C3'H2'120.8°119.9°
C1'C2'FH2'120.8°120.3°
C1'C2'C3'C4'60.8°53.8°
C1'C2'C3'O3'179.6°173.6°
C1'C2'C3'H3'60.3°65.9°
C2'C1'O5'C5'56.0°67.6°
O5'C1'C2'C3'59.3°61.3°
O5'C1'C2'F179.8°178.8°
O5'C1'C2'H2'60.9°58.5°
C1'O5'C5'C4'53.5°67.6°
C1'O5'C5'C6'179.6°172.4°
C1'O5'C5'H5'62.8°52.5°
H1'C1'C2'C3'60.9°58.7°
H1'C1'C2'F59.6°61.2°
H1'C1'C2'H2'178.9°178.6°
H1'C1'O5'C5'59.5°52.4°
C3'C2'FH2'120.2°120.2°
C2'C3'C4'O3'119.3°119.9°
C2'C3'C4'H3'121.4°119.8°
C2'C3'O3'H3'121.5°120.5°
C2'C3'C4'C5'61.4°53.7°
C2'C3'C4'O4'179.9°173.7°
C2'C3'C4'H4'59.5°66.1°
C2'C3'O3'HO3'48.0°60.8°
FC2'C3'C4'179.3°173.7°
FC2'C3'O3'59.7°66.6°
FC2'C3'H3'59.6°53.9°
H2'C2'C3'C4'60.0°66.1°
H2'C2'C3'O3'59.6°53.6°
H2'C2'C3'H3'178.9°174.1°
C4'C3'O3'H3'121.1°120.3°
C3'C4'C5'O4'121.5°120.0°
C3'C4'C5'H4'118.1°119.8°
C3'C4'O4'H4'118.1°120.2°
C3'C4'C5'C6'179.1°178.7°
C3'C4'C5'O5'57.3°61.2°
C3'C4'C5'H5'63.7°58.9°
C4'C3'O3'HO3'165.4°180.0°
C3'C4'O4'HO4'155.8°60.4°
O3'C3'C4'C5'179.3°173.6°
O3'C3'C4'O4'60.6°66.4°
O3'C3'C4'H4'59.7°53.8°
H3'C3'C4'C5'60.0°66.0°
H3'C3'C4'O4'58.7°53.9°
H3'C3'C4'H4'179.1°174.1°
H3'C3'O3'HO3'73.5°59.7°
C5'C4'O4'H4'121.0°120.2°
C4'C5'C6'O5'123.0°120.3°
C4'C5'C6'H5'115.9°119.8°
C4'C5'O5'H5'116.3°120.0°
C4'C5'C6'C7'179.2°175.3°
C4'C5'C6'O6'57.8°55.3°
C4'C5'C6'H6'63.6°64.7°
C5'C4'O4'HO4'34.8°180.0°
O4'C4'C5'C6'59.4°58.7°
O4'C4'C5'O5'178.8°178.8°
O4'C4'C5'H5'57.8°61.1°
H4'C4'C5'C6'61.0°61.5°
H4'C4'C5'O5'60.8°58.6°
H4'C4'C5'H5'178.2°178.7°
H4'C4'O4'HO4'86.1°59.8°
C6'C5'O5'H5'117.7°119.9°
C5'C6'C7'O6'122.7°120.0°
C5'C6'C7'H6'116.0°120.0°
C5'C6'O6'H6'116.6°120.0°
C5'C6'C7'O7'0.2°175.0°
C5'C6'C7'H7'1116.6°65.0°
C5'C6'C7'H7'2120.2°55.0°
C5'C6'O6'HO6'19.3°60.0°
O5'C5'C6'C7'57.8°55.0°
O5'C5'C6'O6'65.2°65.0°
O5'C5'C6'H6'173.5°175.0°
H5'C5'C6'C7'63.3°64.9°
H5'C5'C6'O6'173.7°175.1°
H5'C5'C6'H6'52.3°55.1°
C7'C6'O6'H6'116.2°120.0°
C6'C7'O7'H7'1116.7°119.9°
C6'C7'O7'H7'2120.0°120.0°
C6'C7'H7'1H7'2118.0°120.0°
C7'C6'O6'HO6'146.5°60.0°
C6'C7'O7'HO7'150.5°180.0°
O6'C6'C7'O7'122.9°65.0°
O6'C6'C7'H7'16.2°55.0°
O6'C6'C7'H7'2117.1°175.0°
H6'C6'C7'O7'115.8°55.0°
H6'C6'C7'H7'1127.4°175.0°
H6'C6'C7'H7'24.2°65.0°
H6'C6'O6'HO6'97.3°180.0°
O7'C7'H7'1H7'2118.0°120.1°
H7'1C7'O7'HO7'92.8°60.0°
H7'2C7'O7'HO7'30.5°60.0°

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon