ADY
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O5' | C5' | sing | 1.43Å | 1.42Å | |
O5' | HO5' | sing | 0.97Å | 0.95Å | |
C5' | C4' | sing | 1.53Å | 1.51Å | |
C5' | H5'1 | sing | 1.09Å | 1.11Å | |
C5' | H5'2 | sing | 1.09Å | 1.11Å | |
C4' | O4' | sing | 1.44Å | 1.46Å | |
C4' | C3' | sing | 1.52Å | 1.48Å | |
C4' | H4' | sing | 1.09Å | 1.12Å | |
O4' | C1' | sing | 1.45Å | 1.42Å | |
C3' | O3' | doub | 1.21Å | 1.25Å | |
C3' | C2' | sing | 1.53Å | 1.51Å | |
C2' | O2' | sing | 1.43Å | 1.43Å | |
C2' | C1' | sing | 1.55Å | 1.54Å | |
C2' | H2' | sing | 1.09Å | 1.11Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C1' | N9 | sing | 1.46Å | 1.49Å | |
C1' | H1' | sing | 1.09Å | 1.11Å | |
N9 | C8 | sing | 1.36Å | 1.42Å | Aromatic |
N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.32Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.10Å | |
N7 | C5 | sing | 1.35Å | 1.40Å | Aromatic |
C5 | C6 | sing | 1.41Å | 1.45Å | Aromatic |
C5 | C4 | doub | 1.41Å | 1.42Å | Aromatic |
C6 | N6 | sing | 1.38Å | 1.33Å | |
C6 | N1 | doub | 1.33Å | 1.36Å | Aromatic |
N6 | HN61 | sing | 0.97Å | 1.02Å | |
N6 | HN62 | sing | 0.97Å | 1.02Å | |
N1 | C2 | sing | 1.32Å | 1.36Å | Aromatic |
C2 | N3 | doub | 1.32Å | 1.35Å | Aromatic |
C2 | H2 | sing | 1.08Å | 1.10Å | |
N3 | C4 | sing | 1.33Å | 1.36Å | Aromatic |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C5' | O5' | HO5' | 102.5° | 106.9° |
O5' | C5' | C4' | 102.5° | 109.5° |
O5' | C5' | H5'1 | 114.8° | 109.5° |
O5' | C5' | H5'2 | 114.9° | 109.5° |
C4' | C5' | H5'1 | 114.8° | 109.5° |
C4' | C5' | H5'2 | 114.8° | 109.4° |
C5' | C4' | O4' | 111.7° | 109.8° |
C5' | C4' | C3' | 126.2° | 109.9° |
C5' | C4' | H4' | 92.9° | 109.7° |
H5'1 | C5' | H5'2 | 95.7° | 109.4° |
O4' | C4' | C3' | 103.8° | 107.7° |
O4' | C4' | H4' | 120.3° | 109.8° |
C4' | O4' | C1' | 101.9° | 106.4° |
C3' | C4' | H4' | 102.7° | 109.8° |
C4' | C3' | O3' | 121.3° | 127.6° |
C4' | C3' | C2' | 109.1° | 104.9° |
O4' | C1' | C2' | 104.0° | 103.2° |
O4' | C1' | N9 | 113.4° | 110.7° |
O4' | C1' | H1' | 113.0° | 110.7° |
O3' | C3' | C2' | 128.8° | 127.5° |
C3' | C2' | O2' | 103.8° | 110.8° |
C3' | C2' | C1' | 94.9° | 102.3° |
C3' | C2' | H2' | 124.0° | 110.8° |
O2' | C2' | C1' | 116.4° | 111.2° |
O2' | C2' | H2' | 105.1° | 110.7° |
C2' | O2' | HO2' | 103.8° | 106.8° |
C1' | C2' | H2' | 112.8° | 110.7° |
C2' | C1' | N9 | 115.6° | 110.7° |
C2' | C1' | H1' | 110.7° | 110.7° |
N9 | C1' | H1' | 100.6° | 110.6° |
C1' | N9 | C8 | 127.7° | 126.3° |
C1' | N9 | C4 | 127.7° | 126.3° |
C8 | N9 | C4 | 104.6° | 107.4° |
N9 | C8 | N7 | 114.9° | 109.9° |
N9 | C8 | H8 | 125.7° | 125.0° |
N9 | C4 | C5 | 106.2° | 106.0° |
N9 | C4 | N3 | 126.3° | 134.9° |
N7 | C8 | H8 | 119.4° | 125.1° |
C8 | N7 | C5 | 103.2° | 109.5° |
N7 | C5 | C6 | 133.4° | 134.7° |
N7 | C5 | C4 | 111.1° | 107.2° |
C6 | C5 | C4 | 115.5° | 118.1° |
C5 | C6 | N6 | 123.5° | 120.8° |
C5 | C6 | N1 | 117.6° | 118.5° |
C5 | C4 | N3 | 127.5° | 119.1° |
N6 | C6 | N1 | 118.9° | 120.8° |
C6 | N6 | HN61 | 123.5° | 120.1° |
C6 | N6 | HN62 | 107.3° | 120.0° |
C6 | N1 | C2 | 120.0° | 121.2° |
HN61 | N6 | HN62 | 107.2° | 120.0° |
N1 | C2 | N3 | 128.3° | 122.5° |
N1 | C2 | H2 | 116.0° | 118.8° |
N3 | C2 | H2 | 115.7° | 118.7° |
C2 | N3 | C4 | 111.1° | 120.6° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O5' | C5' | C4' | H5'1 | 125.2° | 120.1° |
O5' | C5' | C4' | H5'2 | 125.3° | 120.0° |
O5' | C5' | H5'1 | H5'2 | 120.8° | 120.0° |
O5' | C5' | C4' | O4' | 66.1° | 66.4° |
O5' | C5' | C4' | C3' | 166.3° | 175.3° |
O5' | C5' | C4' | H4' | 58.2° | 54.4° |
HO5' | O5' | C5' | C4' | 180.0° | 180.0° |
HO5' | O5' | C5' | H5'1 | 54.8° | 60.0° |
HO5' | O5' | C5' | H5'2 | 54.8° | 60.0° |
C4' | C5' | H5'1 | H5'2 | 120.7° | 119.9° |
C5' | C4' | O4' | C3' | 138.9° | 119.6° |
C5' | C4' | O4' | H4' | 107.2° | 120.8° |
C5' | C4' | C3' | H4' | 103.3° | 120.8° |
C5' | C4' | O4' | C1' | 171.0° | 145.7° |
C5' | C4' | C3' | O3' | 56.6° | 58.6° |
C5' | C4' | C3' | C2' | 132.6° | 121.5° |
H5'1 | C5' | C4' | O4' | 59.1° | 173.5° |
H5'1 | C5' | C4' | C3' | 68.5° | 55.2° |
H5'1 | C5' | C4' | H4' | 176.5° | 65.7° |
H5'2 | C5' | C4' | O4' | 168.6° | 53.6° |
H5'2 | C5' | C4' | C3' | 41.0° | 64.7° |
H5'2 | C5' | C4' | H4' | 67.0° | 174.4° |
O4' | C4' | C3' | H4' | 126.0° | 119.6° |
O4' | C4' | C3' | O3' | 172.7° | 178.2° |
O4' | C4' | C3' | C2' | 1.9° | 1.9° |
C4' | O4' | C1' | C2' | 51.3° | 39.1° |
C4' | O4' | C1' | N9 | 177.6° | 157.6° |
C4' | O4' | C1' | H1' | 68.7° | 79.4° |
C3' | C4' | O4' | C1' | 32.1° | 26.0° |
C4' | C3' | O3' | C2' | 168.8° | 179.9° |
C4' | C3' | C2' | O2' | 144.8° | 139.4° |
C4' | C3' | C2' | C1' | 26.0° | 20.8° |
C4' | C3' | C2' | H2' | 95.8° | 97.3° |
H4' | C4' | O4' | C1' | 81.8° | 93.5° |
H4' | C4' | C3' | O3' | 46.7° | 62.2° |
H4' | C4' | C3' | C2' | 124.1° | 117.7° |
O4' | C1' | C2' | C3' | 47.0° | 36.5° |
O4' | C1' | C2' | O2' | 155.0° | 154.9° |
O4' | C1' | C2' | N9 | 124.9° | 118.5° |
O4' | C1' | C2' | H1' | 121.6° | 118.4° |
O4' | C1' | C2' | H2' | 83.2° | 81.6° |
O4' | C1' | N9 | H1' | 120.9° | 123.0° |
O4' | C1' | N9 | C8 | 71.5° | 21.2° |
O4' | C1' | N9 | C4 | 108.5° | 158.7° |
O3' | C3' | C2' | O2' | 25.1° | 40.5° |
O3' | C3' | C2' | C1' | 143.9° | 159.1° |
O3' | C3' | C2' | H2' | 94.3° | 82.9° |
C3' | C2' | O2' | C1' | 102.7° | 113.1° |
C3' | C2' | O2' | H2' | 131.6° | 123.4° |
C3' | C2' | C1' | H2' | 130.2° | 118.1° |
C3' | C2' | O2' | HO2' | 180.0° | 61.5° |
C3' | C2' | C1' | N9 | 171.9° | 155.0° |
C3' | C2' | C1' | H1' | 74.6° | 81.9° |
O2' | C2' | C1' | H2' | 121.7° | 123.5° |
O2' | C2' | C1' | N9 | 80.1° | 86.7° |
O2' | C2' | C1' | H1' | 33.4° | 36.4° |
C1' | C2' | O2' | HO2' | 77.3° | 174.5° |
C2' | C1' | N9 | H1' | 119.2° | 123.1° |
C2' | C1' | N9 | C8 | 48.3° | 92.6° |
C2' | C1' | N9 | C4 | 131.7° | 87.4° |
H2' | C2' | O2' | HO2' | 48.4° | 61.9° |
H2' | C2' | C1' | N9 | 41.7° | 36.8° |
H2' | C2' | C1' | H1' | 155.2° | 159.9° |
C1' | N9 | C8 | C4 | 180.0° | 180.0° |
C1' | N9 | C8 | N7 | 179.9° | 180.0° |
C1' | N9 | C8 | H8 | 0.2° | 0.0° |
C1' | N9 | C4 | C5 | 179.9° | 179.7° |
C1' | N9 | C4 | N3 | 0.1° | 0.0° |
H1' | C1' | N9 | C8 | 167.5° | 144.3° |
H1' | C1' | N9 | C4 | 12.4° | 35.7° |
N9 | C8 | N7 | H8 | 180.0° | 180.0° |
N9 | C8 | N7 | C5 | 0.1° | 0.3° |
C8 | N9 | C4 | C5 | 0.1° | 0.3° |
C8 | N9 | C4 | N3 | 179.9° | 180.0° |
C4 | N9 | C8 | N7 | 0.1° | 0.0° |
C4 | N9 | C8 | H8 | 179.9° | 180.0° |
N9 | C4 | C5 | N7 | 0.0° | 0.5° |
N9 | C4 | C5 | C6 | 179.8° | 179.6° |
N9 | C4 | C5 | N3 | 180.0° | 179.7° |
N9 | C4 | N3 | C2 | 180.0° | 180.0° |
C8 | N7 | C5 | C6 | 179.8° | 179.4° |
C8 | N7 | C5 | C4 | 0.0° | 0.5° |
H8 | C8 | N7 | C5 | 179.9° | 179.7° |
N7 | C5 | C6 | C4 | 179.7° | 178.9° |
N7 | C5 | C6 | N6 | 0.1° | 0.8° |
N7 | C5 | C6 | N1 | 180.0° | 179.5° |
N7 | C5 | C4 | N3 | 180.0° | 179.8° |
C5 | C6 | N6 | N1 | 180.0° | 179.7° |
C5 | C6 | N6 | HN61 | 180.0° | 179.7° |
C5 | C6 | N6 | HN62 | 54.7° | 0.6° |
C5 | C6 | N1 | C2 | 0.1° | 0.3° |
C6 | C5 | C4 | N3 | 0.3° | 0.6° |
C4 | C5 | C6 | N6 | 179.8° | 179.7° |
C4 | C5 | C6 | N1 | 0.2° | 0.6° |
C5 | C4 | N3 | C2 | 0.1° | 0.3° |
C6 | N6 | HN61 | HN62 | 125.3° | 179.7° |
N6 | C6 | N1 | C2 | 180.0° | 180.0° |
N1 | C6 | N6 | HN61 | 0.0° | 0.0° |
N1 | C6 | N6 | HN62 | 125.3° | 179.7° |
C6 | N1 | C2 | N3 | 0.2° | 0.1° |
C6 | N1 | C2 | H2 | 179.9° | 180.0° |
N1 | C2 | N3 | H2 | 180.0° | 179.9° |
N1 | C2 | N3 | C4 | 0.2° | 0.0° |
H2 | C2 | N3 | C4 | 179.9° | 180.0° |