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ADV

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PAO5'sing1.61Å1.51Å
PACXsing1.82Å1.71Å
PAO2Asing1.61Å1.43Å
PAO1Adoub1.48Å1.40Å
O5'C5'sing1.43Å1.48Å
C5'C4'sing1.53Å1.46Å
C5'H5'1sing1.09Å1.12Å
C5'H5'2sing1.09Å1.12Å
C4'O4'sing1.44Å1.45Å
C4'C3'sing1.54Å1.50Å
C4'H'4sing1.09Å1.11Å
O4'C1'sing1.44Å1.49Å
C3'O3'sing1.43Å1.45Å
C3'C2'sing1.55Å1.61Å
C3'H'3sing1.09Å1.12Å
O3'HO'3sing0.97Å0.95Å
C2'O2'sing1.43Å1.50Å
C2'C1'sing1.54Å1.54Å
C2'H'2sing1.09Å1.12Å
O2'HO'2sing0.97Å0.95Å
C1'N9sing1.46Å1.55Å
C1'H'1sing1.09Å1.11Å
N9C8sing1.36Å1.37ÅAromatic
N9C4sing1.37Å1.39ÅAromatic
C8N7doub1.30Å1.32ÅAromatic
C8H8sing1.08Å1.10Å
N7C5sing1.35Å1.39ÅAromatic
C5C6doub1.41Å1.45ÅAromatic
C5C4sing1.41Å1.40ÅAromatic
C6N6sing1.38Å1.33Å
C6N1sing1.33Å1.42ÅAromatic
N6H61sing0.97Å1.02Å
N6H62sing0.97Å1.02Å
N1C2doub1.32Å1.40ÅAromatic
C2N3sing1.32Å1.34ÅAromatic
C2H2sing1.08Å1.10Å
N3C4doub1.33Å1.42ÅAromatic
CXPBsing1.82Å1.69Å
CXHX1sing1.09Å1.12Å
CXHX2sing1.09Å1.11Å
PBO1Bdoub1.48Å1.48Å
PBOR5sing1.61Å1.64Å
PBO2Bsing1.61Å1.47Å
OR5CR5sing1.43Å1.60Å
CR5CR4sing1.53Å1.59Å
CR5H5R1sing1.09Å1.11Å
CR5H5R2sing1.09Å1.11Å
CR4OR4sing1.43Å1.58Å
CR4CR3sing1.54Å1.57Å
CR4HR4sing1.09Å1.11Å
OR4CR1sing1.44Å1.49Å
CR3OR3sing1.43Å1.40Å
CR3CR2sing1.55Å1.55Å
CR3HR3sing1.09Å1.12Å
OR3HOR3sing0.97Å0.95Å
CR2OR2sing1.43Å1.35Å
CR2CR1sing1.55Å1.55Å
CR2HR2sing1.09Å1.12Å
OR2HOR2sing0.97Å0.95Å
CR1OR1sing1.43Å1.44Å
CR1HR1sing1.09Å1.12Å
OR1HOR1sing0.97Å0.95Å
O2AHOA2sing0.97Å0.95Å
O2BHOB2sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O5'PACX108.8°109.5°
O5'PAO2A107.9°109.5°
O5'PAO1A109.5°109.5°
PAO5'C5'122.6°106.8°
CXPAO2A110.4°109.5°
CXPAO1A111.0°109.5°
PACXPB130.8°109.5°
PACXHX1104.8°109.4°
PACXHX2104.8°109.4°
O2APAO1A109.2°109.4°
PAO2AHOA2107.9°106.8°
O5'C5'C4'106.1°109.5°
O5'C5'H5'1113.5°109.5°
O5'C5'H5'2113.5°109.4°
C4'C5'H5'1113.5°109.5°
C4'C5'H5'2113.5°109.4°
C5'C4'O4'108.7°110.4°
C5'C4'C3'111.1°110.5°
C5'C4'H'4107.6°110.2°
H5'1C5'H5'297.0°109.6°
O4'C4'C3'105.0°104.8°
O4'C4'H'4113.4°110.4°
C4'O4'C1'115.0°105.3°
C3'C4'H'4111.0°110.3°
C4'C3'O3'110.7°110.6°
C4'C3'C2'104.7°104.1°
C4'C3'H'3112.4°110.5°
O4'C1'C2'102.8°104.9°
O4'C1'N9109.1°110.4°
O4'C1'H'1114.1°110.3°
O3'C3'C2'111.0°110.5°
O3'C3'H'3106.1°110.4°
C3'O3'HO'3110.7°106.8°
C2'C3'H'3112.0°110.6°
C3'C2'O2'108.9°110.5°
C3'C2'C1'104.1°104.0°
C3'C2'H'2112.4°110.5°
O2'C2'C1'107.0°110.8°
O2'C2'H'2109.8°110.4°
C2'O2'HO'2109.0°106.8°
C1'C2'H'2114.2°110.4°
C2'C1'N9109.7°110.4°
C2'C1'H'1113.5°110.3°
N9C1'H'1107.6°110.3°
C1'N9C8130.3°126.2°
C1'N9C4122.1°126.3°
C8N9C4106.8°107.5°
N9C8N7113.0°109.9°
N9C8H8125.0°125.0°
N9C4C5104.7°106.0°
N9C4N3128.4°135.0°
N7C8H8122.0°125.0°
C8N7C5104.6°109.5°
N7C5C6133.3°134.7°
N7C5C4110.7°107.1°
C6C5C4115.7°118.2°
C5C6N6122.7°120.8°
C5C6N1118.2°118.5°
C5C4N3126.8°119.0°
N6C6N1118.7°120.8°
C6N6H61122.7°120.0°
C6N6H62107.5°120.0°
C6N1C2119.0°121.2°
H61N6H62107.5°120.0°
N1C2N3126.4°122.5°
N1C2H2119.2°118.7°
N3C2H2114.3°118.8°
C2N3C4113.1°120.7°
PBCXHX1104.8°109.5°
PBCXHX2104.8°109.5°
CXPBO1B107.4°109.5°
CXPBOR5108.4°109.5°
CXPBO2B111.5°109.5°
HX1CXHX2104.3°109.5°
O1BPBOR5107.7°109.5°
O1BPBO2B109.2°109.4°
OR5PBO2B112.4°109.4°
PBOR5CR5115.4°106.9°
PBO2BHOB2111.5°106.8°
OR5CR5CR4111.2°109.5°
OR5CR5H5R1111.5°109.5°
OR5CR5H5R2111.5°109.4°
CR4CR5H5R1111.6°109.5°
CR4CR5H5R2111.6°109.5°
CR5CR4OR4110.6°109.8°
CR5CR4CR3106.4°109.8°
CR5CR4HR4109.8°109.8°
H5R1CR5H5R298.8°109.5°
OR4CR4CR3106.5°107.7°
OR4CR4HR4109.7°109.9°
CR4OR4CR1108.1°110.0°
CR3CR4HR4113.7°109.8°
CR4CR3OR3110.4°111.2°
CR4CR3CR2104.8°102.2°
CR4CR3HR3112.2°110.8°
OR4CR1CR2106.9°105.1°
OR4CR1OR1108.2°110.3°
OR4CR1HR1111.9°110.3°
OR3CR3CR2110.1°110.8°
OR3CR3HR3107.1°110.7°
CR3OR3HOR3110.4°106.8°
CR2CR3HR3112.4°110.8°
CR3CR2OR2111.1°111.1°
CR3CR2CR1106.6°101.0°
CR3CR2HR2110.4°111.2°
OR2CR2CR1109.9°111.1°
OR2CR2HR2107.1°111.0°
CR2OR2HOR2111.1°106.8°
CR1CR2HR2111.6°111.0°
CR2CR1OR1109.2°110.4°
CR2CR1HR1110.9°110.3°
OR1CR1HR1109.7°110.3°
CR1OR1HOR1108.2°106.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O5'PACXO2A118.3°120.0°
O5'PACXO1A120.6°120.1°
O5'PAO2AO1A119.0°120.0°
PAO5'C5'C4'172.4°179.9°
PAO5'C5'H5'147.1°60.0°
PAO5'C5'H5'262.4°60.0°
O5'PACXPB95.3°180.0°
O5'PACXHX129.9°60.0°
O5'PACXHX2139.4°60.0°
O5'PAO2AHOA2180.0°60.0°
CXPAO2AO1A122.2°119.9°
CXPAO5'C5'50.4°180.0°
PACXPBHX1125.2°120.0°
PACXPBHX2125.3°120.0°
PACXHX1HX2109.9°119.9°
PACXPBO1B82.0°60.0°
PACXPBOR5161.8°180.0°
PACXPBO2B37.6°60.0°
CXPAO2AHOA261.2°60.1°
O2APAO5'C5'170.2°60.0°
O2APACXPB146.4°59.9°
O2APACXHX188.3°180.0°
O2APACXHX221.2°60.1°
O1APAO5'C5'71.0°60.0°
O1APACXPB25.2°60.0°
O1APACXHX1150.5°60.1°
O1APACXHX2100.0°180.0°
O1APAO2AHOA261.0°180.0°
O5'C5'C4'H5'1125.3°120.0°
O5'C5'C4'H5'2125.3°119.9°
O5'C5'H5'1H5'2119.4°120.0°
O5'C5'C4'O4'81.8°61.4°
O5'C5'C4'C3'163.0°176.9°
O5'C5'C4'H'441.3°60.8°
C4'C5'H5'1H5'2119.4°119.9°
C5'C4'O4'C3'119.0°119.0°
C5'C4'O4'H'4119.6°122.2°
C5'C4'C3'H'4119.7°122.2°
C5'C4'O4'C1'128.5°159.5°
C5'C4'C3'O3'99.4°98.3°
C5'C4'C3'C2'140.9°143.0°
C5'C4'C3'H'319.1°24.3°
H5'1C5'C4'O4'43.5°178.6°
H5'1C5'C4'C3'71.7°63.1°
H5'1C5'C4'H'4166.6°59.2°
H5'2C5'C4'O4'152.9°58.5°
H5'2C5'C4'C3'37.8°57.0°
H5'2C5'C4'H'484.0°179.2°
O4'C4'C3'H'4122.9°118.8°
O4'C4'C3'O3'143.2°142.8°
O4'C4'C3'C2'23.5°24.1°
O4'C4'C3'H'398.3°94.7°
C4'O4'C1'C2'9.6°40.4°
C4'O4'C1'N9106.8°159.4°
C4'O4'C1'H'1132.9°78.4°
C3'C4'O4'C1'9.5°40.5°
C4'C3'O3'C2'115.8°114.7°
C4'C3'O3'H'3122.3°122.6°
C4'C3'C2'H'3122.1°118.6°
C4'C3'O3'HO'3180.0°180.0°
C4'C3'C2'O2'84.3°118.8°
C4'C3'C2'C1'29.6°0.1°
C4'C3'C2'H'2153.8°118.6°
H'4C4'O4'C1'112.0°78.3°
H'4C4'C3'O3'20.3°23.9°
H'4C4'C3'C2'99.4°94.8°
H'4C4'C3'H'3138.8°146.5°
O4'C1'C2'C3'23.1°23.8°
O4'C1'C2'O2'92.2°142.6°
O4'C1'C2'N9116.0°118.9°
O4'C1'C2'H'1123.7°118.8°
O4'C1'C2'H'2146.1°94.7°
O4'C1'N9H'1124.2°122.2°
O4'C1'N9C836.0°27.1°
O4'C1'N9C4155.6°152.9°
O3'C3'C2'H'3118.5°122.6°
O3'C3'C2'O2'35.2°0.1°
O3'C3'C2'C1'149.1°118.9°
O3'C3'C2'H'286.7°122.7°
C2'C3'O3'HO'364.2°65.3°
C3'C2'O2'C1'112.0°114.8°
C3'C2'O2'H'2123.5°122.6°
C3'C2'C1'H'2123.0°118.6°
C3'C2'O2'HO'2179.9°61.4°
C3'C2'C1'N992.9°142.7°
C3'C2'C1'H'1146.8°95.0°
H'3C3'O3'HO'357.7°57.4°
H'3C3'C2'O2'153.7°122.5°
H'3C3'C2'C1'92.5°118.5°
H'3C3'C2'H'231.7°0.0°
O2'C2'C1'H'2121.7°122.7°
O2'C2'C1'N9151.9°98.5°
O2'C2'C1'H'131.5°23.8°
C1'C2'O2'HO'268.1°176.2°
C2'C1'N9H'1123.9°122.2°
C2'C1'N9C875.9°88.5°
C2'C1'N9C492.5°91.5°
H'2C2'O2'HO'256.4°61.2°
H'2C2'C1'N930.1°24.2°
H'2C2'C1'H'190.2°146.4°
C1'N9C8C4169.8°180.0°
C1'N9C8N7175.0°180.0°
C1'N9C8H84.9°0.1°
C1'N9C4C5176.0°179.7°
C1'N9C4N31.0°0.0°
H'1C1'N9C8160.2°149.3°
H'1C1'N9C431.3°30.7°
N9C8N7H8179.9°179.9°
N9C8N7C52.8°0.3°
C8N9C4C55.2°0.2°
C8N9C4N3171.8°180.0°
C4N9C8N75.2°0.0°
C4N9C8H8174.7°179.9°
N9C4C5N73.8°0.4°
N9C4C5C6177.6°179.6°
N9C4C5N3177.1°179.8°
N9C4N3C2177.7°180.0°
C8N7C5C6173.1°179.5°
C8N7C5C40.8°0.4°
H8C8N7C5177.2°179.8°
N7C5C6C4172.0°179.0°
N7C5C6N66.5°0.8°
N7C5C6N1179.1°179.6°
N7C5C4N3173.3°179.8°
C5C6N6N1172.5°179.7°
C5C6N6H61180.0°179.7°
C5C6N6H6254.7°0.6°
C5C6N1C29.0°0.3°
C6C5C4N30.5°0.6°
C4C5C6N6165.6°179.7°
C4C5C6N17.0°0.6°
C5C4N3C25.9°0.3°
C6N6H61H62125.3°179.7°
N6C6N1C2163.9°180.0°
N1C6N6H617.4°0.0°
N1C6N6H62117.8°179.8°
C6N1C2N33.4°0.0°
C6N1C2H2176.6°180.0°
N1C2N3H2180.0°180.0°
N1C2N3C43.9°0.0°
H2C2N3C4176.2°180.0°
PBCXHX1HX2109.9°120.0°
CXPBO1BOR5116.6°120.1°
CXPBO1BO2B121.1°120.0°
CXPBOR5O2B123.7°120.0°
CXPBOR5CR588.6°180.0°
CXPBO2BHOB2180.0°60.0°
HX1CXPBO1B43.2°60.0°
HX1CXPBOR572.9°60.0°
HX1CXPBO2B162.8°180.0°
HX2CXPBO1B152.7°180.0°
HX2CXPBOR536.6°60.0°
HX2CXPBO2B87.7°60.0°
O1BPBOR5O2B120.4°119.9°
O1BPBOR5CR5155.4°60.0°
O1BPBO2BHOB261.4°180.0°
PBOR5CR5CR4122.5°180.0°
PBOR5CR5H5R1112.3°60.0°
PBOR5CR5H5R22.8°60.0°
OR5PBO2BHOB258.1°60.1°
O2BPBOR5CR535.1°60.0°
OR5CR5CR4H5R1125.2°120.0°
OR5CR5CR4H5R2125.2°120.0°
OR5CR5H5R1H5R2117.4°119.9°
OR5CR5CR4OR456.6°61.6°
OR5CR5CR4CR358.7°179.8°
OR5CR5CR4HR4177.8°59.3°
CR4CR5H5R1H5R2117.5°120.0°
CR5CR4OR4CR3115.2°119.5°
CR5CR4OR4HR4121.3°120.9°
CR5CR4CR3HR4121.0°120.9°
CR5CR4OR4CR1117.3°117.8°
CR5CR4CR3OR3137.7°100.9°
CR5CR4CR3CR2103.8°140.8°
CR5CR4CR3HR318.4°22.7°
H5R1CR5CR4OR4178.2°58.4°
H5R1CR5CR4CR366.5°59.8°
H5R1CR5CR4HR457.0°179.3°
H5R2CR5CR4OR468.7°178.4°
H5R2CR5CR4CR3176.0°60.2°
H5R2CR5CR4HR452.6°60.7°
OR4CR4CR3HR4120.9°119.6°
OR4CR4CR3OR3104.2°139.6°
OR4CR4CR3CR214.3°21.3°
OR4CR4CR3HR3136.4°96.9°
CR4OR4CR1CR217.7°24.4°
CR4OR4CR1OR199.8°143.4°
CR4OR4CR1HR1139.2°94.5°
CR3CR4OR4CR12.1°1.7°
CR4CR3OR3CR2115.2°113.0°
CR4CR3OR3HR3122.4°123.6°
CR4CR3CR2HR3122.0°118.1°
CR4CR3OR3HOR3180.0°174.4°
CR4CR3CR2OR2144.8°83.9°
CR4CR3CR2CR125.0°34.1°
CR4CR3CR2HR296.4°151.9°
HR4CR4OR4CR1121.4°121.3°
HR4CR4CR3OR316.7°20.0°
HR4CR4CR3CR2135.2°98.3°
HR4CR4CR3HR3102.6°143.5°
OR4CR1CR2CR327.0°36.4°
OR4CR1CR2OR2147.6°81.6°
OR4CR1CR2OR1116.8°119.0°
OR4CR1CR2HR1122.2°118.9°
OR4CR1CR2HR293.7°154.4°
OR4CR1OR1HR1122.3°122.1°
OR4CR1OR1HOR1180.0°61.4°
OR3CR3CR2HR3119.3°123.3°
OR3CR3CR2OR226.2°34.6°
OR3CR3CR2CR193.7°152.6°
OR3CR3CR2HR2144.9°89.5°
CR2CR3OR3HOR364.8°61.4°
CR3CR2OR2CR1117.8°111.6°
CR3CR2OR2HR2120.7°124.3°
CR3CR2CR1HR2120.7°118.0°
CR3CR2OR2HOR2180.0°173.0°
CR3CR2CR1OR189.8°155.3°
CR3CR2CR1HR1149.2°82.5°
HR3CR3OR3HOR357.7°62.0°
HR3CR3CR2OR293.1°158.0°
HR3CR3CR2CR1147.0°84.1°
HR3CR3CR2HR225.6°33.8°
OR2CR2CR1HR2118.7°124.1°
OR2CR2CR1OR130.8°37.4°
OR2CR2CR1HR190.2°159.6°
CR1CR2OR2HOR262.2°61.4°
CR2CR1OR1HR1121.7°122.2°
CR2CR1OR1HOR164.1°177.1°
HR2CR2OR2HOR259.3°62.7°
HR2CR2CR1OR1149.5°86.7°
HR2CR2CR1HR128.5°35.5°
HR1CR1OR1HOR157.7°60.6°

226262

PDB entries from 2024-10-16

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