ADN
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O5' | C5' | sing | 1.43Å | 1.42Å | |
O5' | HO5' | sing | 0.97Å | 0.95Å | |
C5' | C4' | sing | 1.53Å | 1.52Å | |
C5' | H5'1 | sing | 1.09Å | 1.12Å | |
C5' | H5'2 | sing | 1.09Å | 1.11Å | |
C4' | O4' | sing | 1.44Å | 1.46Å | |
C4' | C3' | sing | 1.54Å | 1.53Å | |
C4' | H4' | sing | 1.09Å | 1.11Å | |
O4' | C1' | sing | 1.44Å | 1.42Å | |
C3' | O3' | sing | 1.43Å | 1.43Å | |
C3' | C2' | sing | 1.55Å | 1.54Å | |
C3' | H3' | sing | 1.09Å | 1.11Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C2' | O2' | sing | 1.43Å | 1.43Å | |
C2' | C1' | sing | 1.54Å | 1.54Å | |
C2' | H2' | sing | 1.09Å | 1.12Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C1' | N9 | sing | 1.46Å | 1.48Å | |
C1' | H1' | sing | 1.09Å | 1.12Å | |
N9 | C8 | sing | 1.36Å | 1.40Å | Aromatic |
N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.31Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.10Å | |
N7 | C5 | sing | 1.36Å | 1.40Å | Aromatic |
C5 | C6 | sing | 1.41Å | 1.44Å | Aromatic |
C5 | C4 | doub | 1.40Å | 1.40Å | Aromatic |
C6 | N6 | sing | 1.38Å | 1.34Å | |
C6 | N1 | doub | 1.33Å | 1.35Å | Aromatic |
N6 | HN61 | sing | 0.97Å | 1.02Å | |
N6 | HN62 | sing | 0.97Å | 1.02Å | |
N1 | C2 | sing | 1.32Å | 1.34Å | Aromatic |
C2 | N3 | doub | 1.32Å | 1.34Å | Aromatic |
C2 | H2 | sing | 1.08Å | 1.10Å | |
N3 | C4 | sing | 1.33Å | 1.35Å | Aromatic |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C5' | O5' | HO5' | 103.1° | 106.8° |
O5' | C5' | C4' | 103.1° | 109.5° |
O5' | C5' | H5'1 | 114.7° | 109.5° |
O5' | C5' | H5'2 | 114.7° | 109.5° |
C4' | C5' | H5'1 | 114.6° | 109.4° |
C4' | C5' | H5'2 | 114.6° | 109.5° |
C5' | C4' | O4' | 111.1° | 110.4° |
C5' | C4' | C3' | 110.9° | 110.5° |
C5' | C4' | H4' | 105.5° | 110.3° |
H5'1 | C5' | H5'2 | 95.9° | 109.5° |
O4' | C4' | C3' | 102.6° | 104.8° |
O4' | C4' | H4' | 113.4° | 110.4° |
C4' | O4' | C1' | 104.2° | 105.3° |
C3' | C4' | H4' | 113.5° | 110.4° |
C4' | C3' | O3' | 106.3° | 110.5° |
C4' | C3' | C2' | 105.9° | 104.1° |
C4' | C3' | H3' | 114.2° | 110.5° |
O4' | C1' | C2' | 104.3° | 104.9° |
O4' | C1' | N9 | 116.4° | 110.4° |
O4' | C1' | H1' | 110.9° | 110.4° |
O3' | C3' | C2' | 110.7° | 110.5° |
O3' | C3' | H3' | 109.6° | 110.4° |
C3' | O3' | HO3' | 106.3° | 106.8° |
C2' | C3' | H3' | 110.0° | 110.6° |
C3' | C2' | O2' | 113.8° | 110.5° |
C3' | C2' | C1' | 101.5° | 104.0° |
C3' | C2' | H2' | 114.5° | 110.5° |
O2' | C2' | C1' | 116.1° | 110.8° |
O2' | C2' | H2' | 99.4° | 110.4° |
C2' | O2' | HO2' | 113.8° | 106.9° |
C1' | C2' | H2' | 112.2° | 110.4° |
C2' | C1' | N9 | 115.7° | 110.4° |
C2' | C1' | H1' | 111.6° | 110.4° |
N9 | C1' | H1' | 98.0° | 110.3° |
C1' | N9 | C8 | 126.9° | 126.3° |
C1' | N9 | C4 | 128.3° | 126.3° |
C8 | N9 | C4 | 104.8° | 107.4° |
N9 | C8 | N7 | 114.5° | 110.0° |
N9 | C8 | H8 | 125.7° | 125.0° |
N9 | C4 | C5 | 106.4° | 106.0° |
N9 | C4 | N3 | 126.4° | 134.9° |
N7 | C8 | H8 | 119.8° | 125.0° |
C8 | N7 | C5 | 103.5° | 109.4° |
N7 | C5 | C6 | 133.0° | 134.6° |
N7 | C5 | C4 | 110.8° | 107.2° |
C6 | C5 | C4 | 116.2° | 118.2° |
C5 | C6 | N6 | 123.6° | 120.8° |
C5 | C6 | N1 | 117.1° | 118.4° |
C5 | C4 | N3 | 127.2° | 119.1° |
N6 | C6 | N1 | 119.3° | 120.8° |
C6 | N6 | HN61 | 123.6° | 120.0° |
C6 | N6 | HN62 | 107.2° | 120.0° |
C6 | N1 | C2 | 119.8° | 121.2° |
HN61 | N6 | HN62 | 107.1° | 119.9° |
N1 | C2 | N3 | 128.7° | 122.5° |
N1 | C2 | H2 | 115.5° | 118.7° |
N3 | C2 | H2 | 115.9° | 118.8° |
C2 | N3 | C4 | 111.1° | 120.6° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O5' | C5' | C4' | H5'1 | 125.3° | 120.0° |
O5' | C5' | C4' | H5'2 | 125.3° | 120.0° |
O5' | C5' | H5'1 | H5'2 | 120.6° | 120.0° |
O5' | C5' | C4' | O4' | 56.8° | 61.5° |
O5' | C5' | C4' | C3' | 170.2° | 176.9° |
O5' | C5' | C4' | H4' | 66.4° | 60.8° |
HO5' | O5' | C5' | C4' | 180.0° | 180.0° |
HO5' | O5' | C5' | H5'1 | 54.7° | 60.0° |
HO5' | O5' | C5' | H5'2 | 54.8° | 60.1° |
C4' | C5' | H5'1 | H5'2 | 120.5° | 120.0° |
C5' | C4' | O4' | C3' | 118.6° | 118.9° |
C5' | C4' | O4' | H4' | 118.6° | 122.2° |
C5' | C4' | C3' | H4' | 118.5° | 122.3° |
C5' | C4' | O4' | C1' | 161.1° | 159.5° |
C5' | C4' | C3' | O3' | 102.2° | 98.4° |
C5' | C4' | C3' | C2' | 140.0° | 142.9° |
C5' | C4' | C3' | H3' | 18.8° | 24.2° |
H5'1 | C5' | C4' | O4' | 68.5° | 178.5° |
H5'1 | C5' | C4' | C3' | 45.0° | 63.1° |
H5'1 | C5' | C4' | H4' | 168.3° | 59.2° |
H5'2 | C5' | C4' | O4' | 178.0° | 58.5° |
H5'2 | C5' | C4' | C3' | 64.5° | 56.9° |
H5'2 | C5' | C4' | H4' | 58.8° | 179.2° |
O4' | C4' | C3' | H4' | 122.7° | 118.8° |
O4' | C4' | C3' | O3' | 139.0° | 142.8° |
O4' | C4' | C3' | C2' | 21.3° | 24.1° |
O4' | C4' | C3' | H3' | 99.9° | 94.7° |
C4' | O4' | C1' | C2' | 47.3° | 40.5° |
C4' | O4' | C1' | N9 | 176.1° | 159.3° |
C4' | O4' | C1' | H1' | 73.0° | 78.4° |
C3' | C4' | O4' | C1' | 42.5° | 40.5° |
C4' | C3' | O3' | C2' | 114.6° | 114.7° |
C4' | C3' | O3' | H3' | 123.9° | 122.6° |
C4' | C3' | C2' | H3' | 123.9° | 118.7° |
C4' | C3' | O3' | HO3' | 180.0° | 61.4° |
C4' | C3' | C2' | O2' | 131.1° | 118.8° |
C4' | C3' | C2' | C1' | 5.6° | 0.1° |
C4' | C3' | C2' | H2' | 115.5° | 118.6° |
H4' | C4' | O4' | C1' | 80.3° | 78.3° |
H4' | C4' | C3' | O3' | 16.3° | 23.9° |
H4' | C4' | C3' | C2' | 101.5° | 94.8° |
H4' | C4' | C3' | H3' | 137.3° | 146.5° |
O4' | C1' | C2' | C3' | 31.7° | 23.8° |
O4' | C1' | C2' | O2' | 155.7° | 142.6° |
O4' | C1' | C2' | N9 | 129.2° | 118.9° |
O4' | C1' | C2' | H1' | 119.8° | 118.9° |
O4' | C1' | C2' | H2' | 91.0° | 94.7° |
O4' | C1' | N9 | H1' | 118.2° | 122.3° |
O4' | C1' | N9 | C8 | 57.3° | 27.0° |
O4' | C1' | N9 | C4 | 123.8° | 152.9° |
O3' | C3' | C2' | H3' | 121.3° | 122.6° |
O3' | C3' | C2' | O2' | 16.3° | 0.1° |
O3' | C3' | C2' | C1' | 109.2° | 118.8° |
O3' | C3' | C2' | H2' | 129.7° | 122.6° |
C2' | C3' | O3' | HO3' | 65.4° | 176.1° |
C3' | C2' | O2' | C1' | 117.3° | 114.7° |
C3' | C2' | O2' | H2' | 122.2° | 122.6° |
C3' | C2' | C1' | H2' | 122.7° | 118.6° |
C3' | C2' | O2' | HO2' | 180.0° | 61.5° |
C3' | C2' | C1' | N9 | 160.9° | 142.8° |
C3' | C2' | C1' | H1' | 88.1° | 95.0° |
H3' | C3' | O3' | HO3' | 56.1° | 61.2° |
H3' | C3' | C2' | O2' | 105.1° | 122.5° |
H3' | C3' | C2' | C1' | 129.5° | 118.6° |
H3' | C3' | C2' | H2' | 8.3° | 0.1° |
O2' | C2' | C1' | H2' | 113.3° | 122.7° |
O2' | C2' | C1' | N9 | 75.1° | 98.5° |
O2' | C2' | C1' | H1' | 35.8° | 23.7° |
C1' | C2' | O2' | HO2' | 62.7° | 176.2° |
C2' | C1' | N9 | H1' | 118.8° | 122.3° |
C2' | C1' | N9 | C8 | 65.7° | 88.5° |
C2' | C1' | N9 | C4 | 113.2° | 91.6° |
H2' | C2' | O2' | HO2' | 57.8° | 61.1° |
H2' | C2' | C1' | N9 | 38.2° | 24.2° |
H2' | C2' | C1' | H1' | 149.1° | 146.4° |
C1' | N9 | C8 | C4 | 179.1° | 179.9° |
C1' | N9 | C8 | N7 | 178.7° | 180.0° |
C1' | N9 | C8 | H8 | 1.2° | 0.1° |
C1' | N9 | C4 | C5 | 178.5° | 179.8° |
C1' | N9 | C4 | N3 | 0.9° | 0.0° |
H1' | C1' | N9 | C8 | 175.6° | 149.2° |
H1' | C1' | N9 | C4 | 5.6° | 30.7° |
N9 | C8 | N7 | H8 | 179.9° | 180.0° |
N9 | C8 | N7 | C5 | 0.0° | 0.2° |
C8 | N9 | C4 | C5 | 0.5° | 0.3° |
C8 | N9 | C4 | N3 | 180.0° | 180.0° |
C4 | N9 | C8 | N7 | 0.3° | 0.1° |
C4 | N9 | C8 | H8 | 179.7° | 180.0° |
N9 | C4 | C5 | N7 | 0.6° | 0.4° |
N9 | C4 | C5 | C6 | 179.2° | 179.6° |
N9 | C4 | C5 | N3 | 179.4° | 179.8° |
N9 | C4 | N3 | C2 | 179.2° | 180.0° |
C8 | N7 | C5 | C6 | 179.3° | 179.4° |
C8 | N7 | C5 | C4 | 0.4° | 0.4° |
H8 | C8 | N7 | C5 | 179.9° | 179.8° |
N7 | C5 | C6 | C4 | 179.7° | 179.0° |
N7 | C5 | C6 | N6 | 0.2° | 0.8° |
N7 | C5 | C6 | N1 | 179.7° | 179.6° |
N7 | C5 | C4 | N3 | 180.0° | 179.8° |
C5 | C6 | N6 | N1 | 179.9° | 179.6° |
C5 | C6 | N6 | HN61 | 179.9° | 179.7° |
C5 | C6 | N6 | HN62 | 54.8° | 0.6° |
C5 | C6 | N1 | C2 | 0.3° | 0.3° |
C6 | C5 | C4 | N3 | 0.3° | 0.6° |
C4 | C5 | C6 | N6 | 179.8° | 179.8° |
C4 | C5 | C6 | N1 | 0.0° | 0.6° |
C5 | C4 | N3 | C2 | 0.1° | 0.2° |
C6 | N6 | HN61 | HN62 | 125.2° | 179.7° |
N6 | C6 | N1 | C2 | 179.8° | 180.0° |
N1 | C6 | N6 | HN61 | 0.1° | 0.1° |
N1 | C6 | N6 | HN62 | 125.1° | 179.8° |
C6 | N1 | C2 | N3 | 0.5° | 0.0° |
C6 | N1 | C2 | H2 | 179.5° | 179.9° |
N1 | C2 | N3 | H2 | 180.0° | 179.9° |
N1 | C2 | N3 | C4 | 0.3° | 0.1° |
H2 | C2 | N3 | C4 | 179.8° | 180.0° |