AD2

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P1	OP1	doub	1.50Å	1.49Å
P1	OP2	sing	1.62Å	1.49Å
P1	O5'	sing	1.62Å	1.59Å
P1	OP3	sing	1.62Å	66.97Å
OP2	HOP2	sing	0.98Å	0.95Å
O5'	C5'	sing	1.42Å	1.43Å
P2	O5P	sing	1.62Å	1.49Å
P2	O4P	doub	1.50Å	1.48Å
P2	O6P	sing	1.62Å	1.52Å
P2	O3'	sing	1.61Å	1.61Å
O5P	HOP5	sing	0.98Å	0.95Å
O6P	HOP6	sing	0.98Å	0.95Å
N9	C4	sing	1.37Å	1.37Å	Aromatic
N9	C8	sing	1.37Å	1.37Å	Aromatic
N9	C1'	sing	1.46Å	1.46Å
C4	N3	doub	1.34Å	1.34Å	Aromatic
C4	C5	sing	1.39Å	1.38Å	Aromatic
N3	C2	sing	1.35Å	1.33Å	Aromatic
C2	N1	doub	1.35Å	1.34Å	Aromatic
C2	H2	sing	1.08Å	1.10Å
N1	C6	sing	1.35Å	1.35Å	Aromatic
C6	N6	sing	1.41Å	1.33Å
C6	C5	doub	1.39Å	1.40Å	Aromatic
N6	H61	sing	1.00Å	1.02Å
N6	H62	sing	1.00Å	1.02Å
C5	N7	sing	1.37Å	1.39Å	Aromatic
N7	C8	doub	1.32Å	1.31Å	Aromatic
C8	H8	sing	1.08Å	1.10Å
C2'	C1'	sing	1.52Å	1.52Å
C2'	C3'	sing	1.51Å	1.52Å
C2'	H2'1	sing	1.09Å	1.12Å
C2'	H2'2	sing	1.10Å	1.12Å
C5'	C4'	sing	1.52Å	1.51Å
C5'	H5'1	sing	1.09Å	1.12Å
C5'	H5'2	sing	1.09Å	1.11Å
C4'	O4'	sing	1.44Å	1.45Å
C4'	C3'	sing	1.52Å	1.53Å
C4'	H4'	sing	1.10Å	1.11Å
O4'	C1'	sing	1.44Å	1.42Å
C1'	H1'	sing	1.09Å	1.11Å
C3'	O3'	sing	1.41Å	1.43Å
C3'	H3'	sing	1.10Å	1.12Å
OP3	HOP3	sing	0.98Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OP1	P1	OP2	119.6°	115.3°
OP1	P1	O5'	108.3°	115.0°
OP1	P1	OP3	45.7°	115.0°
OP2	P1	O5'	108.5°	103.7°
OP2	P1	OP3	100.6°	103.3°
P1	OP2	HOP2	119.7°	118.9°
O5'	P1	OP3	77.5°	102.9°
P1	O5'	C5'	120.7°	118.5°
P1	OP3	HOP3	45.7°	118.9°
O5'	C5'	C4'	109.8°	108.7°
O5'	C5'	H5'1	112.1°	109.2°
O5'	C5'	H5'2	112.1°	109.2°
O5P	P2	O4P	119.5°	115.2°
O5P	P2	O6P	108.7°	103.3°
O5P	P2	O3'	107.2°	103.8°
P2	O5P	HOP5	119.5°	118.9°
O4P	P2	O6P	108.4°	115.0°
O4P	P2	O3'	107.8°	115.1°
O6P	P2	O3'	104.2°	102.6°
P2	O6P	HOP6	108.7°	118.9°
P2	O3'	C3'	119.1°	118.2°
C4	N9	C8	105.8°	106.8°
C4	N9	C1'	127.2°	127.0°
N9	C4	N3	127.6°	127.5°
N9	C4	C5	105.7°	105.3°
C8	N9	C1'	127.0°	126.2°
N9	C8	N7	113.8°	112.3°
N9	C8	H8	125.2°	122.1°
N9	C1'	C2'	112.9°	113.8°
N9	C1'	O4'	107.8°	109.4°
N9	C1'	H1'	107.4°	105.1°
N3	C4	C5	126.7°	127.2°
C4	N3	C2	110.6°	110.4°
C4	C5	C6	117.1°	116.9°
C4	C5	N7	110.8°	110.7°
N3	C2	N1	129.3°	128.8°
N3	C2	H2	115.0°	115.6°
N1	C2	H2	115.7°	115.6°
C2	N1	C6	118.5°	117.5°
N1	C6	N6	118.8°	120.2°
N1	C6	C5	117.7°	119.1°
N6	C6	C5	123.5°	120.7°
C6	N6	H61	108.9°	119.4°
C6	N6	H62	118.8°	119.4°
C6	C5	N7	132.1°	132.4°
H61	N6	H62	108.9°	120.9°
C5	N7	C8	103.9°	104.8°
N7	C8	H8	121.0°	125.5°
C1'	C2'	C3'	103.7°	103.2°
C1'	C2'	H2'1	114.4°	114.1°
C1'	C2'	H2'2	114.4°	110.0°
C2'	C1'	O4'	106.6°	107.7°
C2'	C1'	H1'	108.6°	111.7°
C3'	C2'	H2'1	114.4°	112.8°
C3'	C2'	H2'2	114.4°	109.9°
C2'	C3'	C4'	104.0°	101.8°
C2'	C3'	O3'	111.7°	111.3°
C2'	C3'	H3'	112.5°	110.2°
H2'1	C2'	H2'2	96.1°	106.8°
C4'	C5'	H5'1	112.1°	110.1°
C4'	C5'	H5'2	112.1°	110.1°
C5'	C4'	O4'	109.0°	109.7°
C5'	C4'	C3'	112.1°	113.6°
C5'	C4'	H4'	107.2°	108.6°
H5'1	C5'	H5'2	98.3°	109.6°
O4'	C4'	C3'	106.5°	105.5°
O4'	C4'	H4'	112.6°	108.2°
C4'	O4'	C1'	110.7°	108.1°
C3'	C4'	H4'	109.6°	111.1°
C4'	C3'	O3'	112.1°	112.4°
C4'	C3'	H3'	112.1°	111.5°
O4'	C1'	H1'	113.7°	109.1°
O3'	C3'	H3'	104.6°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP1	P1	OP2	O5'	124.9°	126.6°
OP1	P1	OP2	OP3	44.7°	126.3°
OP1	P1	O5'	OP3	34.2°	125.8°
OP1	P1	OP2	HOP2	180.0°	48.8°
OP1	P1	O5'	C5'	40.8°	180.0°
OP1	P1	OP3	HOP3	180.0°	48.1°
OP2	P1	O5'	OP3	97.2°	107.4°
OP2	P1	O5'	C5'	172.1°	53.2°
OP2	P1	OP3	HOP3	58.6°	78.4°
O5'	P1	OP2	HOP2	55.1°	175.4°
P1	O5'	C5'	C4'	161.3°	180.0°
P1	O5'	C5'	H5'1	73.5°	59.9°
P1	O5'	C5'	H5'2	36.0°	59.9°
O5'	P1	OP3	HOP3	48.1°	173.9°
OP3	P1	OP2	HOP2	135.3°	77.5°
OP3	P1	O5'	C5'	74.9°	54.2°
O5'	C5'	C4'	H5'1	125.3°	119.6°
O5'	C5'	C4'	H5'2	125.3°	119.5°
O5'	C5'	H5'1	H5'2	118.0°	119.5°
O5'	C5'	C4'	O4'	75.1°	61.8°
O5'	C5'	C4'	C3'	42.6°	179.5°
O5'	C5'	C4'	H4'	162.8°	56.3°
O5P	P2	O4P	O6P	125.2°	120.1°
O5P	P2	O4P	O3'	122.6°	120.9°
O5P	P2	O6P	O3'	114.1°	107.8°
O5P	P2	O6P	HOP6	180.0°	78.5°
O5P	P2	O3'	C3'	27.6°	173.1°
O4P	P2	O6P	O3'	114.6°	125.8°
O4P	P2	O5P	HOP5	180.0°	48.8°
O4P	P2	O6P	HOP6	48.7°	48.0°
O4P	P2	O3'	C3'	102.3°	60.0°
O6P	P2	O5P	HOP5	55.0°	77.4°
O6P	P2	O3'	C3'	142.8°	65.7°
O3'	P2	O5P	HOP5	57.1°	175.7°
O3'	P2	O6P	HOP6	65.9°	173.8°
P2	O3'	C3'	C2'	98.6°	60.0°
P2	O3'	C3'	C4'	145.1°	173.4°
P2	O3'	C3'	H3'	23.4°	62.1°
C4	N9	C8	C1'	179.1°	180.0°
N9	C4	N3	C5	179.4°	179.9°
N9	C4	N3	C2	179.2°	180.0°
N9	C4	C5	C6	179.1°	180.0°
N9	C4	C5	N7	0.8°	0.0°
C4	N9	C8	N7	0.9°	0.0°
C4	N9	C8	H8	179.1°	180.0°
C4	N9	C1'	C2'	179.2°	92.5°
C4	N9	C1'	O4'	63.4°	147.0°
C4	N9	C1'	H1'	59.5°	29.9°
C8	N9	C4	N3	179.5°	179.9°
C8	N9	C4	C5	1.0°	0.0°
N9	C8	N7	C5	0.4°	0.0°
N9	C8	N7	H8	180.0°	180.0°
C8	N9	C1'	C2'	0.3°	87.5°
C8	N9	C1'	O4'	117.8°	33.0°
C8	N9	C1'	H1'	119.4°	150.0°
C1'	N9	C4	N3	1.4°	0.1°
C1'	N9	C4	C5	178.1°	180.0°
C1'	N9	C8	N7	178.2°	180.0°
C1'	N9	C8	H8	1.8°	0.0°
N9	C1'	C2'	O4'	118.1°	121.4°
N9	C1'	C2'	H1'	119.0°	118.8°
N9	C1'	C2'	C3'	145.7°	102.8°
N9	C1'	C2'	H2'1	20.5°	20.0°
N9	C1'	C2'	H2'2	89.0°	140.0°
N9	C1'	O4'	C4'	137.6°	128.8°
N9	C1'	O4'	H1'	118.9°	114.5°
C4	N3	C2	N1	0.1°	0.0°
C4	N3	C2	H2	179.9°	180.0°
N3	C4	C5	C6	0.4°	0.1°
N3	C4	C5	N7	179.7°	180.0°
C5	C4	N3	C2	0.2°	0.1°
C4	C5	C6	N1	0.3°	0.1°
C4	C5	C6	N6	179.7°	180.0°
C4	C5	C6	N7	179.9°	180.0°
C4	C5	N7	C8	0.2°	0.0°
N3	C2	N1	H2	180.0°	180.0°
N3	C2	N1	C6	0.1°	0.1°
C2	N1	C6	N6	179.9°	180.0°
C2	N1	C6	C5	0.0°	0.1°
H2	C2	N1	C6	179.9°	180.0°
N1	C6	N6	C5	179.9°	179.9°
N1	C6	N6	H61	54.8°	94.6°
N1	C6	N6	H62	180.0°	91.6°
N1	C6	C5	N7	179.8°	180.0°
C6	N6	H61	H62	130.8°	173.7°
N6	C6	C5	N7	0.2°	0.0°
C5	C6	N6	H61	125.3°	85.4°
C5	C6	N6	H62	0.1°	88.4°
C6	C5	N7	C8	179.7°	180.0°
C5	N7	C8	H8	179.6°	180.0°
C1'	C2'	C3'	H2'1	125.3°	123.7°
C1'	C2'	C3'	H2'2	125.3°	117.3°
C1'	C2'	H2'1	H2'2	120.3°	121.8°
C2'	C1'	O4'	C4'	16.2°	4.6°
C1'	C2'	C3'	C4'	28.0°	33.0°
C2'	C1'	O4'	H1'	119.6°	121.4°
C1'	C2'	C3'	O3'	93.1°	152.9°
C1'	C2'	C3'	H3'	149.6°	85.5°
C3'	C2'	H2'1	H2'2	120.3°	120.9°
C2'	C3'	C4'	C5'	99.9°	157.2°
C2'	C3'	C4'	O4'	19.2°	37.0°
C2'	C3'	C4'	O3'	120.8°	119.2°
C2'	C3'	C4'	H3'	121.9°	117.5°
C2'	C3'	C4'	H4'	141.3°	80.0°
C3'	C2'	C1'	O4'	27.6°	18.6°
C3'	C2'	C1'	H1'	95.2°	138.4°
C2'	C3'	O3'	H3'	122.0°	122.1°
H2'1	C2'	C3'	C4'	97.2°	156.6°
H2'1	C2'	C1'	O4'	97.6°	141.4°
H2'1	C2'	C1'	H1'	139.5°	98.8°
H2'1	C2'	C3'	O3'	141.7°	83.4°
H2'1	C2'	C3'	H3'	24.4°	38.2°
H2'2	C2'	C3'	C4'	153.3°	84.3°
H2'2	C2'	C1'	O4'	152.9°	98.6°
H2'2	C2'	C1'	H1'	30.1°	21.2°
H2'2	C2'	C3'	O3'	32.2°	35.7°
H2'2	C2'	C3'	H3'	85.1°	157.3°
C4'	C5'	H5'1	H5'2	118.0°	121.2°
C5'	C4'	O4'	C3'	121.1°	122.8°
C5'	C4'	O4'	H4'	118.8°	118.3°
C5'	C4'	C3'	H4'	118.8°	122.8°
C5'	C4'	O4'	C1'	119.1°	148.9°
C5'	C4'	C3'	O3'	139.3°	83.6°
C5'	C4'	C3'	H3'	22.0°	39.7°
H5'1	C5'	C4'	O4'	50.2°	57.8°
H5'1	C5'	C4'	C3'	167.8°	60.0°
H5'1	C5'	C4'	H4'	71.9°	175.9°
H5'2	C5'	C4'	O4'	159.7°	178.7°
H5'2	C5'	C4'	C3'	82.7°	60.9°
H5'2	C5'	C4'	H4'	37.5°	63.3°
O4'	C4'	C3'	H4'	122.1°	117.0°
C4'	O4'	C1'	H1'	103.4°	116.8°
O4'	C4'	C3'	O3'	101.6°	156.2°
O4'	C4'	C3'	H3'	141.1°	80.5°
C3'	C4'	O4'	C1'	2.0°	26.2°
C4'	C3'	O3'	H3'	121.7°	124.5°
H4'	C4'	O4'	C1'	122.1°	92.8°
H4'	C4'	C3'	O3'	20.5°	39.2°
H4'	C4'	C3'	H3'	96.8°	162.5°

Definition date:	2002-03-06
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	1L2B