ABM
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
P | CM | sing | 1.82Å | 1.81Å | |
P | O2P | doub | 1.48Å | 1.55Å | |
P | O3P | sing | 1.61Å | 1.53Å | |
P | O5' | sing | 1.61Å | 1.63Å | |
CM | HM1 | sing | 1.09Å | 1.11Å | |
CM | HM2 | sing | 1.09Å | 1.12Å | |
CM | HM3 | sing | 1.09Å | 1.11Å | |
O3P | HOP3 | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.48Å | |
C5' | C4' | sing | 1.53Å | 1.56Å | |
C5' | H5'1 | sing | 1.09Å | 1.12Å | |
C5' | H5'2 | sing | 1.09Å | 1.11Å | |
C4' | O4' | sing | 1.44Å | 1.48Å | |
C4' | C3' | sing | 1.54Å | 1.57Å | |
C4' | H4' | sing | 1.09Å | 1.11Å | |
O4' | C1' | sing | 1.44Å | 1.47Å | |
C3' | O3' | sing | 1.43Å | 1.45Å | |
C3' | C2' | sing | 1.55Å | 1.53Å | |
C3' | H3' | sing | 1.09Å | 1.11Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C2' | O2' | sing | 1.43Å | 1.46Å | |
C2' | C1' | sing | 1.55Å | 1.56Å | |
C2' | H2' | sing | 1.09Å | 1.11Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
C1' | N9 | sing | 1.46Å | 1.50Å | |
C1' | H1' | sing | 1.09Å | 1.12Å | |
N9 | C8 | sing | 1.36Å | 1.38Å | Aromatic |
N9 | C4 | sing | 1.37Å | 1.35Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.32Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.10Å | |
N7 | C5 | sing | 1.35Å | 1.39Å | Aromatic |
C5 | C6 | sing | 1.41Å | 1.42Å | Aromatic |
C5 | C4 | doub | 1.41Å | 1.38Å | Aromatic |
C6 | N6 | sing | 1.38Å | 1.32Å | |
C6 | N1 | doub | 1.33Å | 1.34Å | Aromatic |
N6 | HN61 | sing | 0.97Å | 1.02Å | |
N6 | HN62 | sing | 0.97Å | 1.02Å | |
N1 | C2 | sing | 1.32Å | 1.35Å | Aromatic |
C2 | N3 | doub | 1.32Å | 1.35Å | Aromatic |
C2 | H2 | sing | 1.08Å | 1.10Å | |
N3 | C4 | sing | 1.33Å | 1.34Å | Aromatic |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
CM | P | O2P | 104.4° | 109.4° |
CM | P | O3P | 104.9° | 109.5° |
CM | P | O5' | 103.1° | 109.4° |
P | CM | HM1 | 104.4° | 109.5° |
P | CM | HM2 | 114.1° | 109.5° |
P | CM | HM3 | 114.1° | 109.5° |
O2P | P | O3P | 118.8° | 109.5° |
O2P | P | O5' | 113.1° | 109.5° |
O3P | P | O5' | 110.6° | 109.5° |
P | O3P | HOP3 | 104.8° | 106.8° |
P | O5' | C5' | 124.0° | 106.8° |
HM1 | CM | HM2 | 114.1° | 109.5° |
HM1 | CM | HM3 | 114.2° | 109.4° |
HM2 | CM | HM3 | 96.4° | 109.5° |
O5' | C5' | C4' | 113.7° | 109.5° |
O5' | C5' | H5'1 | 110.7° | 109.4° |
O5' | C5' | H5'2 | 110.7° | 109.4° |
C4' | C5' | H5'1 | 110.6° | 109.5° |
C4' | C5' | H5'2 | 110.6° | 109.5° |
C5' | C4' | O4' | 112.6° | 109.9° |
C5' | C4' | C3' | 113.4° | 109.9° |
C5' | C4' | H4' | 103.8° | 109.9° |
H5'1 | C5' | H5'2 | 99.6° | 109.5° |
O4' | C4' | C3' | 107.5° | 107.4° |
O4' | C4' | H4' | 110.1° | 109.9° |
C4' | O4' | C1' | 110.5° | 107.0° |
C3' | C4' | H4' | 109.3° | 109.8° |
C4' | C3' | O3' | 109.5° | 110.9° |
C4' | C3' | C2' | 105.8° | 104.0° |
C4' | C3' | H3' | 111.5° | 110.4° |
O4' | C1' | C2' | 107.2° | 103.6° |
O4' | C1' | N9 | 109.0° | 110.6° |
O4' | C1' | H1' | 112.5° | 110.6° |
O3' | C3' | C2' | 108.3° | 110.5° |
O3' | C3' | H3' | 109.0° | 110.4° |
C3' | O3' | HO3' | 109.5° | 106.8° |
C2' | C3' | H3' | 112.6° | 110.5° |
C3' | C2' | O2' | 110.6° | 110.8° |
C3' | C2' | C1' | 105.9° | 102.1° |
C3' | C2' | H2' | 112.4° | 111.0° |
O2' | C2' | C1' | 113.0° | 110.9° |
O2' | C2' | H2' | 105.1° | 110.9° |
C2' | O2' | HO2' | 110.6° | 106.8° |
C1' | C2' | H2' | 110.0° | 110.8° |
C2' | C1' | N9 | 112.6° | 110.8° |
C2' | C1' | H1' | 108.8° | 110.6° |
N9 | C1' | H1' | 106.9° | 110.5° |
C1' | N9 | C8 | 129.8° | 126.2° |
C1' | N9 | C4 | 124.6° | 126.3° |
C8 | N9 | C4 | 104.8° | 107.5° |
N9 | C8 | N7 | 114.5° | 110.0° |
N9 | C8 | H8 | 124.6° | 125.0° |
N9 | C4 | C5 | 107.6° | 106.0° |
N9 | C4 | N3 | 125.1° | 134.9° |
N7 | C8 | H8 | 120.9° | 125.0° |
C8 | N7 | C5 | 102.7° | 109.4° |
N7 | C5 | C6 | 132.4° | 134.7° |
N7 | C5 | C4 | 110.3° | 107.1° |
C6 | C5 | C4 | 116.8° | 118.1° |
C5 | C6 | N6 | 123.8° | 120.7° |
C5 | C6 | N1 | 116.8° | 118.4° |
C5 | C4 | N3 | 126.9° | 119.1° |
N6 | C6 | N1 | 118.6° | 120.8° |
C6 | N6 | HN61 | 123.8° | 120.0° |
C6 | N6 | HN62 | 107.1° | 120.0° |
C6 | N1 | C2 | 118.0° | 121.2° |
HN61 | N6 | HN62 | 107.0° | 120.0° |
N1 | C2 | N3 | 129.2° | 122.4° |
N1 | C2 | H2 | 115.0° | 118.8° |
N3 | C2 | H2 | 115.7° | 118.8° |
C2 | N3 | C4 | 109.5° | 120.7° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
CM | P | O2P | O3P | 116.4° | 120.0° |
CM | P | O2P | O5' | 111.4° | 120.0° |
CM | P | O3P | O5' | 110.6° | 120.0° |
P | CM | HM1 | HM2 | 125.2° | 120.0° |
P | CM | HM1 | HM3 | 125.3° | 120.0° |
P | CM | HM2 | HM3 | 120.0° | 120.0° |
CM | P | O3P | HOP3 | 180.0° | 60.0° |
CM | P | O5' | C5' | 146.4° | 180.0° |
O2P | P | O3P | O5' | 133.4° | 120.1° |
O2P | P | CM | HM1 | 180.0° | 60.0° |
O2P | P | CM | HM2 | 54.7° | 180.0° |
O2P | P | CM | HM3 | 54.7° | 60.0° |
O2P | P | O3P | HOP3 | 63.9° | 180.0° |
O2P | P | O5' | C5' | 34.2° | 60.1° |
O3P | P | CM | HM1 | 54.3° | 60.0° |
O3P | P | CM | HM2 | 179.6° | 60.0° |
O3P | P | CM | HM3 | 71.0° | 180.0° |
O3P | P | O5' | C5' | 101.9° | 60.0° |
O5' | P | CM | HM1 | 61.5° | 180.0° |
O5' | P | CM | HM2 | 63.7° | 60.0° |
O5' | P | CM | HM3 | 173.2° | 60.0° |
O5' | P | O3P | HOP3 | 69.4° | 60.0° |
P | O5' | C5' | C4' | 137.9° | 180.0° |
P | O5' | C5' | H5'1 | 96.8° | 60.0° |
P | O5' | C5' | H5'2 | 12.6° | 60.0° |
HM1 | CM | HM2 | HM3 | 120.1° | 120.0° |
O5' | C5' | C4' | H5'1 | 125.3° | 120.0° |
O5' | C5' | C4' | H5'2 | 125.3° | 120.0° |
O5' | C5' | H5'1 | H5'2 | 116.6° | 119.9° |
O5' | C5' | C4' | O4' | 69.3° | 61.7° |
O5' | C5' | C4' | C3' | 168.3° | 179.7° |
O5' | C5' | C4' | H4' | 49.8° | 59.3° |
C4' | C5' | H5'1 | H5'2 | 116.5° | 120.0° |
C5' | C4' | O4' | C3' | 125.6° | 119.6° |
C5' | C4' | O4' | H4' | 115.4° | 121.0° |
C5' | C4' | C3' | H4' | 115.3° | 121.0° |
C5' | C4' | O4' | C1' | 129.2° | 145.9° |
C5' | C4' | C3' | O3' | 126.2° | 119.8° |
C5' | C4' | C3' | C2' | 117.3° | 121.4° |
C5' | C4' | C3' | H3' | 5.4° | 2.9° |
H5'1 | C5' | C4' | O4' | 55.9° | 58.2° |
H5'1 | C5' | C4' | C3' | 66.4° | 59.8° |
H5'1 | C5' | C4' | H4' | 175.0° | 179.3° |
H5'2 | C5' | C4' | O4' | 165.4° | 178.3° |
H5'2 | C5' | C4' | C3' | 43.0° | 60.3° |
H5'2 | C5' | C4' | H4' | 75.5° | 60.7° |
O4' | C4' | C3' | H4' | 119.5° | 119.5° |
O4' | C4' | C3' | O3' | 108.7° | 120.7° |
O4' | C4' | C3' | C2' | 7.9° | 1.9° |
O4' | C4' | C3' | H3' | 130.6° | 116.7° |
C4' | O4' | C1' | C2' | 13.6° | 40.0° |
C4' | O4' | C1' | N9 | 135.7° | 158.8° |
C4' | O4' | C1' | H1' | 105.9° | 78.5° |
C3' | C4' | O4' | C1' | 3.6° | 26.4° |
C4' | C3' | O3' | C2' | 114.9° | 114.8° |
C4' | C3' | O3' | H3' | 122.3° | 122.6° |
C4' | C3' | C2' | H3' | 122.0° | 118.4° |
C4' | C3' | O3' | HO3' | 180.0° | 176.2° |
C4' | C3' | C2' | O2' | 138.4° | 139.2° |
C4' | C3' | C2' | C1' | 15.6° | 21.0° |
C4' | C3' | C2' | H2' | 104.5° | 97.1° |
H4' | C4' | O4' | C1' | 115.4° | 93.0° |
H4' | C4' | C3' | O3' | 10.8° | 1.2° |
H4' | C4' | C3' | C2' | 127.4° | 117.6° |
H4' | C4' | C3' | H3' | 109.9° | 123.9° |
O4' | C1' | C2' | C3' | 18.2° | 37.1° |
O4' | C1' | C2' | O2' | 139.4° | 155.3° |
O4' | C1' | C2' | N9 | 119.8° | 118.6° |
O4' | C1' | C2' | H1' | 121.8° | 118.5° |
O4' | C1' | C2' | H2' | 103.5° | 81.1° |
O4' | C1' | N9 | H1' | 121.8° | 122.8° |
O4' | C1' | N9 | C8 | 120.0° | 28.6° |
O4' | C1' | N9 | C4 | 72.0° | 151.7° |
O3' | C3' | C2' | H3' | 120.6° | 122.5° |
O3' | C3' | C2' | O2' | 21.0° | 20.2° |
O3' | C3' | C2' | C1' | 101.7° | 98.0° |
O3' | C3' | C2' | H2' | 138.2° | 143.9° |
C2' | C3' | O3' | HO3' | 65.0° | 61.4° |
C3' | C2' | O2' | C1' | 118.5° | 112.6° |
C3' | C2' | O2' | H2' | 121.6° | 123.7° |
C3' | C2' | C1' | H2' | 121.7° | 118.2° |
C3' | C2' | O2' | HO2' | 180.0° | 67.4° |
C3' | C2' | C1' | N9 | 138.0° | 155.8° |
C3' | C2' | C1' | H1' | 103.7° | 81.4° |
H3' | C3' | O3' | HO3' | 57.8° | 61.2° |
H3' | C3' | C2' | O2' | 99.6° | 102.4° |
H3' | C3' | C2' | C1' | 137.6° | 139.5° |
H3' | C3' | C2' | H2' | 17.5° | 21.3° |
O2' | C2' | C1' | H2' | 117.1° | 123.7° |
O2' | C2' | C1' | N9 | 100.8° | 86.1° |
O2' | C2' | C1' | H1' | 17.5° | 36.7° |
C1' | C2' | O2' | HO2' | 61.5° | 180.0° |
C2' | C1' | N9 | H1' | 119.4° | 122.9° |
C2' | C1' | N9 | C8 | 1.2° | 85.7° |
C2' | C1' | N9 | C4 | 169.2° | 94.1° |
H2' | C2' | O2' | HO2' | 58.4° | 56.3° |
H2' | C2' | C1' | N9 | 16.3° | 37.5° |
H2' | C2' | C1' | H1' | 134.7° | 160.4° |
C1' | N9 | C8 | C4 | 169.8° | 179.8° |
C1' | N9 | C8 | N7 | 171.7° | 180.0° |
C1' | N9 | C8 | H8 | 8.2° | 0.1° |
C1' | N9 | C4 | C5 | 169.8° | 179.9° |
C1' | N9 | C4 | N3 | 3.5° | 0.8° |
H1' | C1' | N9 | C8 | 118.2° | 151.4° |
H1' | C1' | N9 | C4 | 49.8° | 28.9° |
N9 | C8 | N7 | H8 | 179.9° | 179.9° |
N9 | C8 | N7 | C5 | 3.5° | 0.1° |
C8 | N9 | C4 | C5 | 0.7° | 0.4° |
C8 | N9 | C4 | N3 | 174.0° | 179.5° |
C4 | N9 | C8 | N7 | 1.9° | 0.3° |
C4 | N9 | C8 | H8 | 178.0° | 179.8° |
N9 | C4 | C5 | N7 | 2.9° | 0.3° |
N9 | C4 | C5 | C6 | 175.2° | 179.8° |
N9 | C4 | C5 | N3 | 173.2° | 179.3° |
N9 | C4 | N3 | C2 | 169.8° | 179.6° |
C8 | N7 | C5 | C6 | 174.5° | 180.0° |
C8 | N7 | C5 | C4 | 3.8° | 0.2° |
H8 | C8 | N7 | C5 | 176.4° | 180.0° |
N7 | C5 | C6 | C4 | 170.2° | 179.8° |
N7 | C5 | C6 | N6 | 2.0° | 0.1° |
N7 | C5 | C6 | N1 | 171.7° | 180.0° |
N7 | C5 | C4 | N3 | 176.1° | 179.6° |
C5 | C6 | N6 | N1 | 169.6° | 179.9° |
C5 | C6 | N6 | HN61 | 180.0° | 180.0° |
C5 | C6 | N6 | HN62 | 54.8° | 0.0° |
C5 | C6 | N1 | C2 | 11.1° | 0.1° |
C6 | C5 | C4 | N3 | 11.7° | 0.5° |
C4 | C5 | C6 | N6 | 172.1° | 179.7° |
C4 | C5 | C6 | N1 | 18.2° | 0.2° |
C5 | C4 | N3 | C2 | 2.3° | 0.5° |
C6 | N6 | HN61 | HN62 | 125.2° | 180.0° |
N6 | C6 | N1 | C2 | 178.6° | 180.0° |
N1 | C6 | N6 | HN61 | 10.4° | 0.1° |
N1 | C6 | N6 | HN62 | 114.8° | 179.9° |
C6 | N1 | C2 | N3 | 4.3° | 0.1° |
C6 | N1 | C2 | H2 | 175.6° | 179.9° |
N1 | C2 | N3 | H2 | 180.0° | 179.9° |
N1 | C2 | N3 | C4 | 11.1° | 0.2° |
H2 | C2 | N3 | C4 | 168.9° | 179.7° |