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ABM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PCMsing1.82Å1.81Å
PO2Pdoub1.48Å1.55Å
PO3Psing1.61Å1.53Å
PO5'sing1.61Å1.63Å
CMHM1sing1.09Å1.11Å
CMHM2sing1.09Å1.12Å
CMHM3sing1.09Å1.11Å
O3PHOP3sing0.97Å0.95Å
O5'C5'sing1.43Å1.48Å
C5'C4'sing1.53Å1.56Å
C5'H5'1sing1.09Å1.12Å
C5'H5'2sing1.09Å1.11Å
C4'O4'sing1.44Å1.48Å
C4'C3'sing1.54Å1.57Å
C4'H4'sing1.09Å1.11Å
O4'C1'sing1.44Å1.47Å
C3'O3'sing1.43Å1.45Å
C3'C2'sing1.55Å1.53Å
C3'H3'sing1.09Å1.11Å
O3'HO3'sing0.97Å0.95Å
C2'O2'sing1.43Å1.46Å
C2'C1'sing1.55Å1.56Å
C2'H2'sing1.09Å1.11Å
O2'HO2'sing0.97Å0.95Å
C1'N9sing1.46Å1.50Å
C1'H1'sing1.09Å1.12Å
N9C8sing1.36Å1.38ÅAromatic
N9C4sing1.37Å1.35ÅAromatic
C8N7doub1.30Å1.32ÅAromatic
C8H8sing1.08Å1.10Å
N7C5sing1.35Å1.39ÅAromatic
C5C6sing1.41Å1.42ÅAromatic
C5C4doub1.41Å1.38ÅAromatic
C6N6sing1.38Å1.32Å
C6N1doub1.33Å1.34ÅAromatic
N6HN61sing0.97Å1.02Å
N6HN62sing0.97Å1.02Å
N1C2sing1.32Å1.35ÅAromatic
C2N3doub1.32Å1.35ÅAromatic
C2H2sing1.08Å1.10Å
N3C4sing1.33Å1.34ÅAromatic
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CMPO2P104.4°109.4°
CMPO3P104.9°109.5°
CMPO5'103.1°109.4°
PCMHM1104.4°109.5°
PCMHM2114.1°109.5°
PCMHM3114.1°109.5°
O2PPO3P118.8°109.5°
O2PPO5'113.1°109.5°
O3PPO5'110.6°109.5°
PO3PHOP3104.8°106.8°
PO5'C5'124.0°106.8°
HM1CMHM2114.1°109.5°
HM1CMHM3114.2°109.4°
HM2CMHM396.4°109.5°
O5'C5'C4'113.7°109.5°
O5'C5'H5'1110.7°109.4°
O5'C5'H5'2110.7°109.4°
C4'C5'H5'1110.6°109.5°
C4'C5'H5'2110.6°109.5°
C5'C4'O4'112.6°109.9°
C5'C4'C3'113.4°109.9°
C5'C4'H4'103.8°109.9°
H5'1C5'H5'299.6°109.5°
O4'C4'C3'107.5°107.4°
O4'C4'H4'110.1°109.9°
C4'O4'C1'110.5°107.0°
C3'C4'H4'109.3°109.8°
C4'C3'O3'109.5°110.9°
C4'C3'C2'105.8°104.0°
C4'C3'H3'111.5°110.4°
O4'C1'C2'107.2°103.6°
O4'C1'N9109.0°110.6°
O4'C1'H1'112.5°110.6°
O3'C3'C2'108.3°110.5°
O3'C3'H3'109.0°110.4°
C3'O3'HO3'109.5°106.8°
C2'C3'H3'112.6°110.5°
C3'C2'O2'110.6°110.8°
C3'C2'C1'105.9°102.1°
C3'C2'H2'112.4°111.0°
O2'C2'C1'113.0°110.9°
O2'C2'H2'105.1°110.9°
C2'O2'HO2'110.6°106.8°
C1'C2'H2'110.0°110.8°
C2'C1'N9112.6°110.8°
C2'C1'H1'108.8°110.6°
N9C1'H1'106.9°110.5°
C1'N9C8129.8°126.2°
C1'N9C4124.6°126.3°
C8N9C4104.8°107.5°
N9C8N7114.5°110.0°
N9C8H8124.6°125.0°
N9C4C5107.6°106.0°
N9C4N3125.1°134.9°
N7C8H8120.9°125.0°
C8N7C5102.7°109.4°
N7C5C6132.4°134.7°
N7C5C4110.3°107.1°
C6C5C4116.8°118.1°
C5C6N6123.8°120.7°
C5C6N1116.8°118.4°
C5C4N3126.9°119.1°
N6C6N1118.6°120.8°
C6N6HN61123.8°120.0°
C6N6HN62107.1°120.0°
C6N1C2118.0°121.2°
HN61N6HN62107.0°120.0°
N1C2N3129.2°122.4°
N1C2H2115.0°118.8°
N3C2H2115.7°118.8°
C2N3C4109.5°120.7°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CMPO2PO3P116.4°120.0°
CMPO2PO5'111.4°120.0°
CMPO3PO5'110.6°120.0°
PCMHM1HM2125.2°120.0°
PCMHM1HM3125.3°120.0°
PCMHM2HM3120.0°120.0°
CMPO3PHOP3180.0°60.0°
CMPO5'C5'146.4°180.0°
O2PPO3PO5'133.4°120.1°
O2PPCMHM1180.0°60.0°
O2PPCMHM254.7°180.0°
O2PPCMHM354.7°60.0°
O2PPO3PHOP363.9°180.0°
O2PPO5'C5'34.2°60.1°
O3PPCMHM154.3°60.0°
O3PPCMHM2179.6°60.0°
O3PPCMHM371.0°180.0°
O3PPO5'C5'101.9°60.0°
O5'PCMHM161.5°180.0°
O5'PCMHM263.7°60.0°
O5'PCMHM3173.2°60.0°
O5'PO3PHOP369.4°60.0°
PO5'C5'C4'137.9°180.0°
PO5'C5'H5'196.8°60.0°
PO5'C5'H5'212.6°60.0°
HM1CMHM2HM3120.1°120.0°
O5'C5'C4'H5'1125.3°120.0°
O5'C5'C4'H5'2125.3°120.0°
O5'C5'H5'1H5'2116.6°119.9°
O5'C5'C4'O4'69.3°61.7°
O5'C5'C4'C3'168.3°179.7°
O5'C5'C4'H4'49.8°59.3°
C4'C5'H5'1H5'2116.5°120.0°
C5'C4'O4'C3'125.6°119.6°
C5'C4'O4'H4'115.4°121.0°
C5'C4'C3'H4'115.3°121.0°
C5'C4'O4'C1'129.2°145.9°
C5'C4'C3'O3'126.2°119.8°
C5'C4'C3'C2'117.3°121.4°
C5'C4'C3'H3'5.4°2.9°
H5'1C5'C4'O4'55.9°58.2°
H5'1C5'C4'C3'66.4°59.8°
H5'1C5'C4'H4'175.0°179.3°
H5'2C5'C4'O4'165.4°178.3°
H5'2C5'C4'C3'43.0°60.3°
H5'2C5'C4'H4'75.5°60.7°
O4'C4'C3'H4'119.5°119.5°
O4'C4'C3'O3'108.7°120.7°
O4'C4'C3'C2'7.9°1.9°
O4'C4'C3'H3'130.6°116.7°
C4'O4'C1'C2'13.6°40.0°
C4'O4'C1'N9135.7°158.8°
C4'O4'C1'H1'105.9°78.5°
C3'C4'O4'C1'3.6°26.4°
C4'C3'O3'C2'114.9°114.8°
C4'C3'O3'H3'122.3°122.6°
C4'C3'C2'H3'122.0°118.4°
C4'C3'O3'HO3'180.0°176.2°
C4'C3'C2'O2'138.4°139.2°
C4'C3'C2'C1'15.6°21.0°
C4'C3'C2'H2'104.5°97.1°
H4'C4'O4'C1'115.4°93.0°
H4'C4'C3'O3'10.8°1.2°
H4'C4'C3'C2'127.4°117.6°
H4'C4'C3'H3'109.9°123.9°
O4'C1'C2'C3'18.2°37.1°
O4'C1'C2'O2'139.4°155.3°
O4'C1'C2'N9119.8°118.6°
O4'C1'C2'H1'121.8°118.5°
O4'C1'C2'H2'103.5°81.1°
O4'C1'N9H1'121.8°122.8°
O4'C1'N9C8120.0°28.6°
O4'C1'N9C472.0°151.7°
O3'C3'C2'H3'120.6°122.5°
O3'C3'C2'O2'21.0°20.2°
O3'C3'C2'C1'101.7°98.0°
O3'C3'C2'H2'138.2°143.9°
C2'C3'O3'HO3'65.0°61.4°
C3'C2'O2'C1'118.5°112.6°
C3'C2'O2'H2'121.6°123.7°
C3'C2'C1'H2'121.7°118.2°
C3'C2'O2'HO2'180.0°67.4°
C3'C2'C1'N9138.0°155.8°
C3'C2'C1'H1'103.7°81.4°
H3'C3'O3'HO3'57.8°61.2°
H3'C3'C2'O2'99.6°102.4°
H3'C3'C2'C1'137.6°139.5°
H3'C3'C2'H2'17.5°21.3°
O2'C2'C1'H2'117.1°123.7°
O2'C2'C1'N9100.8°86.1°
O2'C2'C1'H1'17.5°36.7°
C1'C2'O2'HO2'61.5°180.0°
C2'C1'N9H1'119.4°122.9°
C2'C1'N9C81.2°85.7°
C2'C1'N9C4169.2°94.1°
H2'C2'O2'HO2'58.4°56.3°
H2'C2'C1'N916.3°37.5°
H2'C2'C1'H1'134.7°160.4°
C1'N9C8C4169.8°179.8°
C1'N9C8N7171.7°180.0°
C1'N9C8H88.2°0.1°
C1'N9C4C5169.8°179.9°
C1'N9C4N33.5°0.8°
H1'C1'N9C8118.2°151.4°
H1'C1'N9C449.8°28.9°
N9C8N7H8179.9°179.9°
N9C8N7C53.5°0.1°
C8N9C4C50.7°0.4°
C8N9C4N3174.0°179.5°
C4N9C8N71.9°0.3°
C4N9C8H8178.0°179.8°
N9C4C5N72.9°0.3°
N9C4C5C6175.2°179.8°
N9C4C5N3173.2°179.3°
N9C4N3C2169.8°179.6°
C8N7C5C6174.5°180.0°
C8N7C5C43.8°0.2°
H8C8N7C5176.4°180.0°
N7C5C6C4170.2°179.8°
N7C5C6N62.0°0.1°
N7C5C6N1171.7°180.0°
N7C5C4N3176.1°179.6°
C5C6N6N1169.6°179.9°
C5C6N6HN61180.0°180.0°
C5C6N6HN6254.8°0.0°
C5C6N1C211.1°0.1°
C6C5C4N311.7°0.5°
C4C5C6N6172.1°179.7°
C4C5C6N118.2°0.2°
C5C4N3C22.3°0.5°
C6N6HN61HN62125.2°180.0°
N6C6N1C2178.6°180.0°
N1C6N6HN6110.4°0.1°
N1C6N6HN62114.8°179.9°
C6N1C2N34.3°0.1°
C6N1C2H2175.6°179.9°
N1C2N3H2180.0°179.9°
N1C2N3C411.1°0.2°
H2C2N3C4168.9°179.7°

222415

PDB entries from 2024-07-10

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