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SummaryGeometryRelated PDB entries

AAP

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CCAsing1.51Å1.50Å
COdoub1.21Å1.24Å
CNsing1.35Å1.33Å
CAC1sing1.51Å1.55Å
CAN'sing1.46Å1.44Å
CAHAsing1.09Å1.12Å
NHN1sing0.97Å1.02Å
NHN2sing0.97Å1.02Å
C1C2doub1.38Å1.39ÅAromatic
C1C6sing1.38Å1.41ÅAromatic
C2C3sing1.38Å1.40ÅAromatic
C2CL2sing1.74Å1.74Å
C3C4doub1.38Å1.42ÅAromatic
C3H3sing1.08Å1.10Å
C4C5sing1.38Å1.38ÅAromatic
C4H4sing1.08Å1.10Å
C5C6doub1.38Å1.38ÅAromatic
C5H5sing1.08Å1.10Å
C6CL6sing1.74Å1.70Å
N'C1'sing1.39Å1.38Å
N'HN'sing0.97Å1.02Å
C1'C2'doub1.41Å1.41ÅAromatic
C1'C6'sing1.39Å1.39ÅAromatic
C2'C3'sing1.40Å1.37ÅAromatic
C2'C'sing1.47Å1.55Å
C3'C4'doub1.38Å1.38ÅAromatic
C3'H3'sing1.08Å1.10Å
C4'C5'sing1.39Å1.37ÅAromatic
C4'H4'sing1.08Å1.10Å
C5'C6'doub1.38Å1.38ÅAromatic
C5'CM5sing1.51Å1.54Å
C6'H6'sing1.08Å1.10Å
C'O'doub1.21Å1.24Å
C'CM'sing1.51Å1.53Å
CM'HM'1sing1.09Å1.11Å
CM'HM'2sing1.09Å1.12Å
CM'HM'3sing1.09Å1.11Å
CM5HM51sing1.09Å1.12Å
CM5HM52sing1.09Å1.11Å
CM5HM53sing1.09Å1.12Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CACO117.3°120.0°
CACN119.5°120.0°
CCAC1113.6°109.4°
CCAN'110.1°109.5°
CCAHA107.5°109.4°
OCN123.1°120.0°
CNHN1123.1°120.0°
CNHN2119.5°120.0°
C1CAN'113.0°109.5°
C1CAHA104.1°109.5°
CAC1C2120.7°120.1°
CAC1C6119.9°120.0°
N'CAHA108.2°109.5°
CAN'C1'127.2°120.0°
CAN'HN'106.0°120.0°
HN1NHN2117.4°120.0°
C2C1C6119.3°119.9°
C1C2C3119.2°120.1°
C1C2CL2122.9°120.0°
C1C6C5121.3°120.0°
C1C6CL6121.7°120.0°
C3C2CL2117.7°120.0°
C2C3C4120.6°120.0°
C2C3H3119.2°120.0°
C4C3H3120.2°120.0°
C3C4C5119.8°120.0°
C3C4H4121.4°119.9°
C5C4H4118.8°120.0°
C4C5C6119.8°120.0°
C4C5H5119.9°120.0°
C6C5H5120.3°120.0°
C5C6CL6117.0°120.0°
C1'N'HN'106.0°120.0°
N'C1'C2'121.0°120.3°
N'C1'C6'118.9°120.2°
C2'C1'C6'120.1°119.6°
C1'C2'C3'118.3°119.6°
C1'C2'C'123.2°120.2°
C1'C6'C5'120.4°120.1°
C1'C6'H6'120.2°120.0°
C3'C2'C'118.5°120.2°
C2'C3'C4'121.1°119.9°
C2'C3'H3'119.1°120.1°
C2'C'O'121.2°120.0°
C2'C'CM'121.1°120.0°
C4'C3'H3'119.8°120.0°
C3'C4'C5'120.8°120.4°
C3'C4'H4'119.9°119.8°
C5'C4'H4'119.3°119.8°
C4'C5'C6'119.3°120.5°
C4'C5'CM5119.7°119.7°
C6'C5'CM5121.0°119.8°
C5'C6'H6'119.4°120.0°
C5'CM5HM51119.6°109.5°
C5'CM5HM52108.5°109.4°
C5'CM5HM53108.6°109.4°
O'C'CM'117.7°120.0°
C'CM'HM'1121.1°109.5°
C'CM'HM'2108.0°109.5°
C'CM'HM'3108.0°109.5°
HM'1CM'HM'2108.0°109.5°
HM'1CM'HM'3108.1°109.5°
HM'2CM'HM'3101.9°109.4°
HM51CM5HM52108.6°109.5°
HM51CM5HM53108.5°109.5°
HM52CM5HM53101.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CACON179.5°180.0°
CCAC1N'126.3°120.0°
CCAC1HA116.6°120.0°
CCAN'HA117.2°120.0°
CACNHN10.5°168.1°
CACNHN2180.0°12.1°
CCAC1C261.3°71.6°
CCAC1C6121.2°108.2°
CCAN'C1'145.7°84.4°
CCAN'HN'89.1°95.5°
OCCAC123.8°73.5°
OCCAN'151.6°166.6°
OCCAHA90.8°46.5°
OCNHN1180.0°11.9°
OCNHN20.5°168.0°
NCCAC1156.6°106.5°
NCCAN'28.8°13.5°
NCCAHA88.8°133.5°
CNHN1HN2179.5°179.9°
C1CAN'HA114.7°120.1°
CAC1C2C6177.6°179.8°
CAC1C2C3179.2°180.0°
CAC1C2CL24.0°0.1°
CAC1C6C5179.3°179.7°
CAC1C6CL60.3°0.2°
C1CAN'C1'86.2°155.7°
C1CAN'HN'39.0°24.4°
N'CAC1C265.0°48.4°
N'CAC1C6112.6°131.8°
CAN'C1'HN'125.2°179.9°
CAN'C1'C2'170.6°174.7°
CAN'C1'C6'10.4°5.6°
HACAC1C2177.9°168.5°
HACAC1C64.6°11.7°
HACAN'C1'28.5°35.6°
HACAN'HN'153.7°144.5°
C1C2C3CL2175.4°179.8°
C1C2C3C41.2°0.1°
C1C2C3H3178.8°179.9°
C2C1C6C51.6°0.5°
C2C1C6CL6177.3°180.0°
C6C1C2C31.6°0.1°
C6C1C2CL2173.6°179.7°
C1C6C5C41.3°0.6°
C1C6C5CL6179.0°179.5°
C1C6C5H5178.7°179.7°
C2C3C4H3180.0°179.8°
C2C3C4C50.8°0.1°
C2C3C4H4179.1°179.9°
CL2C2C3C4174.2°180.0°
CL2C2C3H35.8°0.2°
C3C4C5H4180.0°180.0°
C3C4C5C60.9°0.3°
C3C4C5H5179.1°180.0°
H3C3C4C5179.2°179.9°
H3C3C4H40.9°0.1°
C4C5C6H5180.0°179.7°
C4C5C6CL6177.7°180.0°
H4C4C5C6179.1°179.7°
H4C4C5H50.9°0.0°
H5C5C6CL62.3°0.3°
N'C1'C2'C6'178.9°179.6°
N'C1'C2'C3'177.8°179.9°
N'C1'C2'C'4.3°0.2°
N'C1'C6'C5'178.1°180.0°
N'C1'C6'H6'2.0°0.1°
HN'N'C1'C2'45.4°5.4°
HN'N'C1'C6'135.7°174.3°
C1'C2'C3'C'178.0°179.7°
C1'C2'C3'C4'0.8°0.2°
C1'C2'C3'H3'179.2°179.8°
C2'C1'C6'C5'0.9°0.4°
C2'C1'C6'H6'179.1°179.7°
C1'C2'C'O'3.3°6.0°
C1'C2'C'CM'174.3°174.0°
C6'C1'C2'C3'1.1°0.4°
C6'C1'C2'C'176.8°179.8°
C1'C6'C5'C4'0.4°0.1°
C1'C6'C5'H6'179.9°179.9°
C1'C6'C5'CM5178.9°179.8°
C2'C3'C4'H3'180.0°179.9°
C2'C3'C4'C5'0.3°0.0°
C2'C3'C4'H4'179.7°180.0°
C3'C2'C'O'178.8°174.3°
C3'C2'C'CM'3.6°5.7°
C'C2'C3'C4'177.2°180.0°
C'C2'C3'H3'2.8°0.1°
C2'C'O'CM'177.7°180.0°
C2'C'CM'HM'1180.0°180.0°
C2'C'CM'HM'254.8°60.0°
C2'C'CM'HM'354.7°60.0°
C3'C4'C5'H4'180.0°180.0°
C3'C4'C5'C6'0.1°0.1°
C3'C4'C5'CM5178.7°179.9°
H3'C3'C4'C5'179.7°179.9°
H3'C3'C4'H4'0.3°0.1°
C4'C5'C6'CM5178.6°179.9°
C4'C5'C6'H6'179.6°180.0°
C4'C5'CM5HM51180.0°90.0°
C4'C5'CM5HM5254.7°150.0°
C4'C5'CM5HM5354.8°30.1°
H4'C4'C5'C6'179.9°180.0°
H4'C4'C5'CM51.3°0.1°
C6'C5'CM5HM511.4°89.9°
C6'C5'CM5HM52126.7°30.1°
C6'C5'CM5HM53123.8°150.0°
CM5C5'C6'H6'1.0°0.1°
C5'CM5HM51HM52125.3°119.9°
C5'CM5HM51HM53125.2°120.0°
C5'CM5HM52HM53114.2°119.9°
O'C'CM'HM'12.3°0.1°
O'C'CM'HM'2122.9°120.1°
O'C'CM'HM'3127.6°120.0°
C'CM'HM'1HM'2125.2°120.0°
C'CM'HM'1HM'3125.3°120.0°
C'CM'HM'2HM'3113.6°120.0°
HM'1CM'HM'2HM'3113.7°120.0°
HM51CM5HM52HM53114.2°120.1°

226262

PDB entries from 2024-10-16

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