AAB
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP3 | sing | 1.61Å | 1.42Å | |
| P | OP1 | doub | 1.48Å | 1.40Å | |
| P | OP2 | sing | 1.61Å | 1.54Å | |
| P | O5' | sing | 1.61Å | 1.54Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.41Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.41Å | |
| C4' | C3' | sing | 1.55Å | 1.50Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C1' | O1' | sing | 1.43Å | 1.39Å | |
| C1' | C2' | sing | 1.54Å | 1.50Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| O1' | HO1' | sing | 0.97Å | 0.95Å | |
| C2' | C3' | sing | 1.55Å | 1.51Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'' | sing | 1.09Å | 1.10Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP3 | P | OP1 | 120.8° | 109.5° |
| OP3 | P | OP2 | 108.8° | 109.5° |
| OP3 | P | O5' | 107.4° | 109.5° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| OP1 | P | OP2 | 107.0° | 109.5° |
| OP1 | P | O5' | 107.6° | 109.5° |
| OP2 | P | O5' | 104.0° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| P | O5' | C5' | 127.5° | 123.0° |
| O5' | C5' | C4' | 111.8° | 109.4° |
| O5' | C5' | H5'' | 108.9° | 109.4° |
| O5' | C5' | H5' | 108.9° | 109.5° |
| C4' | C5' | H5'' | 108.9° | 109.5° |
| C4' | C5' | H5' | 108.9° | 109.5° |
| C5' | C4' | O4' | 111.9° | 110.6° |
| C5' | C4' | C3' | 110.0° | 110.6° |
| C5' | C4' | H4' | 108.5° | 110.6° |
| H5'' | C5' | H5' | 109.5° | 109.5° |
| O4' | C4' | C3' | 107.8° | 103.5° |
| O4' | C4' | H4' | 110.0° | 110.6° |
| C4' | O4' | C1' | 108.2° | 107.0° |
| C3' | C4' | H4' | 108.6° | 110.8° |
| C4' | C3' | C2' | 95.9° | 102.1° |
| C4' | C3' | O3' | 110.8° | 110.9° |
| C4' | C3' | H3' | 111.9° | 110.9° |
| O4' | C1' | O1' | 110.1° | 109.9° |
| O4' | C1' | C2' | 98.7° | 107.3° |
| O4' | C1' | H1' | 112.8° | 109.9° |
| O1' | C1' | C2' | 109.8° | 109.9° |
| O1' | C1' | H1' | 113.1° | 109.8° |
| C1' | O1' | HO1' | 109.5° | 114.0° |
| C2' | C1' | H1' | 111.4° | 110.0° |
| C1' | C2' | C3' | 100.2° | 104.2° |
| C1' | C2' | H2' | 111.7° | 110.5° |
| C1' | C2' | H2'' | 111.7° | 110.5° |
| C3' | C2' | H2' | 111.8° | 110.5° |
| C3' | C2' | H2'' | 111.7° | 110.5° |
| C2' | C3' | O3' | 112.2° | 110.9° |
| C2' | C3' | H3' | 111.8° | 110.9° |
| H2' | C2' | H2'' | 109.5° | 110.5° |
| O3' | C3' | H3' | 113.1° | 110.9° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP1 | OP2 | 125.1° | 120.0° |
| OP3 | P | OP1 | O5' | 123.7° | 120.0° |
| OP3 | P | OP2 | O5' | 114.3° | 120.0° |
| OP3 | P | OP2 | HOP2 | 132.0° | 60.0° |
| OP3 | P | O5' | C5' | 26.1° | 175.0° |
| OP1 | P | OP2 | O5' | 113.7° | 120.0° |
| OP1 | P | OP3 | HOP3 | 0.0° | 60.0° |
| OP1 | P | OP2 | HOP2 | 0.0° | 180.0° |
| OP1 | P | O5' | C5' | 157.6° | 55.0° |
| OP2 | P | OP3 | HOP3 | 124.2° | 60.0° |
| OP2 | P | O5' | C5' | 89.2° | 65.0° |
| O5' | P | OP3 | HOP3 | 123.8° | 180.0° |
| O5' | P | OP2 | HOP2 | 113.7° | 60.0° |
| P | O5' | C5' | C4' | 163.9° | 180.0° |
| P | O5' | C5' | H5'' | 43.6° | 60.1° |
| P | O5' | C5' | H5' | 75.8° | 60.0° |
| O5' | C5' | C4' | H5'' | 120.4° | 119.9° |
| O5' | C5' | C4' | H5' | 120.4° | 120.0° |
| O5' | C5' | H5'' | H5' | 118.9° | 120.0° |
| O5' | C5' | C4' | O4' | 62.0° | 66.5° |
| O5' | C5' | C4' | C3' | 57.9° | 179.5° |
| O5' | C5' | C4' | H4' | 176.6° | 56.4° |
| C4' | C5' | H5'' | H5' | 118.9° | 120.1° |
| C5' | C4' | O4' | C3' | 121.2° | 118.5° |
| C5' | C4' | O4' | H4' | 120.6° | 122.9° |
| C5' | C4' | C3' | H4' | 118.6° | 122.9° |
| C5' | C4' | O4' | C1' | 124.7° | 158.5° |
| C5' | C4' | C3' | C2' | 94.1° | 155.5° |
| C5' | C4' | C3' | O3' | 149.5° | 86.3° |
| C5' | C4' | C3' | H3' | 22.3° | 37.3° |
| H5'' | C5' | C4' | O4' | 177.7° | 53.5° |
| H5'' | C5' | C4' | C3' | 62.5° | 60.6° |
| H5'' | C5' | C4' | H4' | 56.2° | 176.4° |
| H5' | C5' | C4' | O4' | 58.4° | 173.6° |
| H5' | C5' | C4' | C3' | 178.2° | 59.5° |
| H5' | C5' | C4' | H4' | 63.1° | 63.5° |
| O4' | C4' | C3' | H4' | 119.1° | 118.6° |
| C4' | O4' | C1' | O1' | 149.1° | 146.0° |
| C4' | O4' | C1' | C2' | 34.2° | 26.5° |
| C4' | O4' | C1' | H1' | 83.5° | 93.1° |
| O4' | C4' | C3' | C2' | 28.2° | 37.0° |
| O4' | C4' | C3' | O3' | 88.2° | 155.2° |
| O4' | C4' | C3' | H3' | 144.5° | 81.2° |
| C3' | C4' | O4' | C1' | 3.6° | 40.1° |
| C4' | C3' | C2' | C1' | 48.1° | 20.9° |
| C4' | C3' | C2' | O3' | 115.3° | 118.2° |
| C4' | C3' | C2' | H3' | 116.5° | 118.2° |
| C4' | C3' | C2' | H2' | 166.5° | 97.8° |
| C4' | C3' | C2' | H2'' | 70.4° | 139.5° |
| C4' | C3' | O3' | H3' | 126.6° | 123.6° |
| C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
| H4' | C4' | O4' | C1' | 114.7° | 78.6° |
| H4' | C4' | C3' | C2' | 147.3° | 81.5° |
| H4' | C4' | C3' | O3' | 30.9° | 36.7° |
| H4' | C4' | C3' | H3' | 96.3° | 160.3° |
| O4' | C1' | O1' | C2' | 107.7° | 117.9° |
| O4' | C1' | O1' | H1' | 127.2° | 121.0° |
| O4' | C1' | C2' | H1' | 118.8° | 119.5° |
| O4' | C1' | O1' | HO1' | 180.0° | 61.4° |
| O4' | C1' | C2' | C3' | 52.2° | 2.0° |
| O4' | C1' | C2' | H2' | 170.7° | 120.7° |
| O4' | C1' | C2' | H2'' | 66.3° | 116.6° |
| O1' | C1' | C2' | H1' | 126.1° | 121.0° |
| O1' | C1' | C2' | C3' | 167.3° | 121.5° |
| O1' | C1' | C2' | H2' | 74.2° | 119.8° |
| O1' | C1' | C2' | H2'' | 48.8° | 2.8° |
| C2' | C1' | O1' | HO1' | 72.3° | 179.3° |
| C1' | C2' | C3' | H2' | 118.5° | 118.7° |
| C1' | C2' | C3' | H2'' | 118.5° | 118.6° |
| C1' | C2' | H2' | H2'' | 124.3° | 122.6° |
| C1' | C2' | C3' | O3' | 67.3° | 139.1° |
| C1' | C2' | C3' | H3' | 164.5° | 97.2° |
| H1' | C1' | O1' | HO1' | 52.8° | 59.6° |
| H1' | C1' | C2' | C3' | 66.6° | 117.5° |
| H1' | C1' | C2' | H2' | 51.9° | 1.2° |
| H1' | C1' | C2' | H2'' | 174.9° | 123.8° |
| C3' | C2' | H2' | H2'' | 124.3° | 122.6° |
| C2' | C3' | O3' | H3' | 127.5° | 123.7° |
| C2' | C3' | O3' | HO3' | 74.1° | 67.3° |
| H2' | C2' | C3' | O3' | 51.2° | 20.4° |
| H2' | C2' | C3' | H3' | 77.0° | 144.0° |
| H2'' | C2' | C3' | O3' | 174.3° | 102.3° |
| H2'' | C2' | C3' | H3' | 46.1° | 21.4° |
| H3' | C3' | O3' | HO3' | 53.4° | 56.4° |
