A9Z
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3' | C3' | sing | 1.43Å | 1.42Å | |
| C3' | C4' | sing | 1.54Å | 1.54Å | |
| C3' | C2' | sing | 1.55Å | 1.55Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| C4' | O4' | sing | 1.44Å | 1.47Å | |
| C5' | O5' | sing | 1.43Å | 1.41Å | |
| C6T | C4T | sing | 1.51Å | 1.55Å | |
| C6T | C7T | sing | 1.53Å | 1.50Å | |
| C4T | C5T | doub | 1.35Å | 1.44Å | Aromatic |
| C4T | N3T | sing | 1.34Å | 1.37Å | Aromatic |
| C5T | N1T | sing | 1.35Å | 1.36Å | Aromatic |
| OP1 | P | doub | 1.48Å | 1.57Å | |
| N3T | N2T | doub | 1.29Å | 1.37Å | Aromatic |
| N1T | C2' | sing | 1.47Å | 1.38Å | |
| N1T | N2T | sing | 1.29Å | 1.41Å | Aromatic |
| C2' | C1' | sing | 1.55Å | 1.55Å | |
| O4' | C1' | sing | 1.44Å | 1.47Å | |
| O5' | P | sing | 1.61Å | 1.75Å | |
| C1' | N9 | sing | 1.47Å | 1.43Å | |
| P | OP3 | sing | 1.61Å | 1.73Å | |
| P | OP2 | sing | 1.61Å | 1.50Å | |
| N3 | C4 | doub | 1.33Å | 1.34Å | Aromatic |
| N3 | C2 | sing | 1.32Å | 1.36Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.36Å | Aromatic |
| N9 | C8 | sing | 1.36Å | 1.37Å | Aromatic |
| C4 | C5 | sing | 1.41Å | 1.45Å | Aromatic |
| C2 | N1 | doub | 1.32Å | 1.33Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.34Å | Aromatic |
| C5 | N7 | sing | 1.36Å | 1.40Å | Aromatic |
| C5 | C6 | doub | 1.41Å | 1.46Å | Aromatic |
| N1 | C6 | sing | 1.33Å | 1.41Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.32Å | |
| OP2 | H1 | sing | 0.97Å | 0.95Å | |
| C5' | H2 | sing | 1.09Å | 1.10Å | |
| C5' | H3 | sing | 1.09Å | 1.10Å | |
| C4' | H4 | sing | 1.09Å | 1.10Å | |
| C3' | H5 | sing | 1.09Å | 1.10Å | |
| O3' | H6 | sing | 0.97Å | 0.95Å | |
| C2' | H7 | sing | 1.09Å | 1.10Å | |
| C5T | H8 | sing | 1.08Å | 1.08Å | |
| C6T | H9 | sing | 1.09Å | 1.10Å | |
| C6T | H10 | sing | 1.09Å | 1.10Å | |
| C7T | H11 | sing | 1.09Å | 1.10Å | |
| C7T | H12 | sing | 1.09Å | 1.10Å | |
| C7T | H13 | sing | 1.09Å | 1.10Å | |
| C1' | H14 | sing | 1.09Å | 1.10Å | |
| C8 | H15 | sing | 1.08Å | 1.08Å | |
| C2 | H16 | sing | 1.08Å | 1.08Å | |
| N6 | H17 | sing | 0.97Å | 1.00Å | |
| N6 | H18 | sing | 0.97Å | 1.00Å | |
| OP3 | H19 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3' | C3' | C4' | 104.1° | 110.5° |
| O3' | C3' | C2' | 113.1° | 110.5° |
| O3' | C3' | H5 | 112.5° | 110.5° |
| C3' | O3' | H6 | 109.5° | 114.0° |
| C4' | C3' | C2' | 105.7° | 104.2° |
| C3' | C4' | C5' | 116.2° | 109.9° |
| C3' | C4' | O4' | 106.0° | 107.3° |
| C3' | C4' | H4 | 107.4° | 110.0° |
| C4' | C3' | H5 | 110.7° | 110.5° |
| C3' | C2' | N1T | 113.7° | 110.9° |
| C3' | C2' | C1' | 97.8° | 102.1° |
| C2' | C3' | H5 | 110.4° | 110.5° |
| C3' | C2' | H7 | 109.9° | 110.9° |
| C5' | C4' | O4' | 111.0° | 109.9° |
| C4' | C5' | O5' | 102.4° | 109.5° |
| C4' | C5' | H2 | 111.2° | 109.5° |
| C4' | C5' | H3 | 111.2° | 109.4° |
| C5' | C4' | H4 | 107.7° | 109.9° |
| C4' | O4' | C1' | 105.4° | 107.0° |
| O4' | C4' | H4 | 108.3° | 109.9° |
| C5' | O5' | P | 117.1° | 123.0° |
| O5' | C5' | H2 | 111.2° | 109.5° |
| O5' | C5' | H3 | 111.2° | 109.5° |
| C4T | C6T | C7T | 98.1° | 109.5° |
| C6T | C4T | C5T | 129.4° | 126.8° |
| C6T | C4T | N3T | 126.0° | 126.8° |
| C4T | C6T | H9 | 112.2° | 109.5° |
| C4T | C6T | H10 | 112.2° | 109.5° |
| C7T | C6T | H9 | 112.2° | 109.5° |
| C7T | C6T | H10 | 112.2° | 109.4° |
| C6T | C7T | H11 | 109.5° | 109.4° |
| C6T | C7T | H12 | 109.4° | 109.5° |
| C6T | C7T | H13 | 109.5° | 109.5° |
| C5T | C4T | N3T | 104.6° | 106.5° |
| C4T | C5T | N1T | 108.3° | 106.2° |
| C4T | C5T | H8 | 125.9° | 126.9° |
| C4T | N3T | N2T | 112.5° | 108.9° |
| C5T | N1T | C2' | 137.5° | 125.9° |
| C5T | N1T | N2T | 109.4° | 108.2° |
| N1T | C5T | H8 | 125.8° | 126.9° |
| OP1 | P | O5' | 104.1° | 109.5° |
| OP1 | P | OP3 | 101.0° | 109.5° |
| OP1 | P | OP2 | 109.7° | 109.5° |
| N3T | N2T | N1T | 105.2° | 110.2° |
| C2' | N1T | N2T | 112.9° | 125.9° |
| N1T | C2' | C1' | 112.0° | 110.9° |
| N1T | C2' | H7 | 112.5° | 110.8° |
| C2' | C1' | O4' | 103.5° | 103.5° |
| C2' | C1' | N9 | 109.3° | 110.6° |
| C1' | C2' | H7 | 109.9° | 110.9° |
| C2' | C1' | H14 | 111.5° | 110.6° |
| O4' | C1' | N9 | 105.8° | 110.6° |
| O4' | C1' | H14 | 112.7° | 110.7° |
| O5' | P | OP3 | 96.0° | 109.5° |
| O5' | P | OP2 | 121.6° | 109.5° |
| C1' | N9 | C4 | 127.2° | 126.3° |
| C1' | N9 | C8 | 124.4° | 126.3° |
| N9 | C1' | H14 | 113.4° | 110.5° |
| OP3 | P | OP2 | 121.3° | 109.4° |
| P | OP3 | H19 | 109.5° | 114.0° |
| P | OP2 | H1 | 109.5° | 114.0° |
| C4 | N3 | C2 | 117.7° | 120.6° |
| N3 | C4 | N9 | 131.0° | 134.9° |
| N3 | C4 | C5 | 121.8° | 119.1° |
| N3 | C2 | N1 | 126.8° | 122.4° |
| N3 | C2 | H16 | 116.6° | 118.8° |
| C4 | N9 | C8 | 108.3° | 107.5° |
| N9 | C4 | C5 | 107.2° | 106.0° |
| N9 | C8 | N7 | 110.6° | 110.0° |
| N9 | C8 | H15 | 124.7° | 125.0° |
| C4 | C5 | N7 | 105.4° | 107.1° |
| C4 | C5 | C6 | 116.5° | 118.2° |
| C2 | N1 | C6 | 118.5° | 121.2° |
| N1 | C2 | H16 | 116.6° | 118.8° |
| C8 | N7 | C5 | 108.4° | 109.5° |
| N7 | C8 | H15 | 124.7° | 125.0° |
| N7 | C5 | C6 | 138.1° | 134.7° |
| C5 | C6 | N1 | 118.6° | 118.4° |
| C5 | C6 | N6 | 118.8° | 120.8° |
| N1 | C6 | N6 | 122.5° | 120.8° |
| C6 | N6 | H17 | 109.5° | 120.0° |
| C6 | N6 | H18 | 109.5° | 120.0° |
| H2 | C5' | H3 | 109.5° | 109.5° |
| H9 | C6T | H10 | 109.5° | 109.5° |
| H11 | C7T | H12 | 109.4° | 109.5° |
| H11 | C7T | H13 | 109.5° | 109.5° |
| H12 | C7T | H13 | 109.5° | 109.4° |
| H17 | N6 | H18 | 109.5° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3' | C3' | C4' | C2' | 119.3° | 118.7° |
| O3' | C3' | C4' | H5 | 121.1° | 122.6° |
| O3' | C3' | C2' | H5 | 127.0° | 122.6° |
| O3' | C3' | C4' | C5' | 125.6° | 119.9° |
| O3' | C3' | C4' | O4' | 110.6° | 120.7° |
| O3' | C3' | C2' | N1T | 37.3° | 20.4° |
| O3' | C3' | C2' | C1' | 81.1° | 97.8° |
| O3' | C3' | C4' | H4 | 5.0° | 1.2° |
| O3' | C3' | C2' | H7 | 164.4° | 144.0° |
| C4' | C3' | C2' | H5 | 119.8° | 118.7° |
| C3' | C4' | C5' | O4' | 121.2° | 117.8° |
| C3' | C4' | C5' | H4 | 120.5° | 121.2° |
| C3' | C4' | O4' | H4 | 115.0° | 119.6° |
| C3' | C4' | C5' | O5' | 75.6° | 175.7° |
| C4' | C3' | C2' | N1T | 150.5° | 139.1° |
| C4' | C3' | C2' | C1' | 32.2° | 20.9° |
| C3' | C4' | O4' | C1' | 20.5° | 26.5° |
| C3' | C4' | C5' | H2 | 165.6° | 64.2° |
| C3' | C4' | C5' | H3 | 43.3° | 55.7° |
| C4' | C3' | O3' | H6 | 180.0° | 61.5° |
| C4' | C3' | C2' | H7 | 82.3° | 97.4° |
| C2' | C3' | C4' | C5' | 115.0° | 121.4° |
| C2' | C3' | C4' | O4' | 8.8° | 2.0° |
| C3' | C2' | N1T | C5T | 83.7° | 84.2° |
| C3' | C2' | N1T | C1' | 109.8° | 112.7° |
| C3' | C2' | N1T | H7 | 125.8° | 123.6° |
| C3' | C2' | N1T | N2T | 91.0° | 96.0° |
| C3' | C2' | C1' | H7 | 114.5° | 118.2° |
| C3' | C2' | C1' | O4' | 45.2° | 37.0° |
| C3' | C2' | C1' | N9 | 157.7° | 155.5° |
| C2' | C3' | C4' | H4 | 124.3° | 117.4° |
| C2' | C3' | O3' | H6 | 65.8° | 176.2° |
| C3' | C2' | C1' | H14 | 76.2° | 81.6° |
| C5' | C4' | O4' | H4 | 118.0° | 121.0° |
| C4' | C5' | O5' | H2 | 118.9° | 120.0° |
| C4' | C5' | O5' | H3 | 118.8° | 119.9° |
| C5' | C4' | O4' | C1' | 147.5° | 145.9° |
| C4' | C5' | O5' | P | 158.8° | 179.9° |
| C4' | C5' | H2 | H3 | 123.3° | 119.9° |
| C5' | C4' | C3' | H5 | 4.6° | 2.7° |
| O4' | C4' | C5' | O5' | 45.6° | 66.5° |
| C4' | O4' | C1' | C2' | 42.3° | 40.1° |
| C4' | O4' | C1' | N9 | 157.2° | 158.6° |
| O4' | C4' | C5' | H2 | 73.2° | 53.6° |
| O4' | C4' | C5' | H3 | 164.5° | 173.5° |
| O4' | C4' | C3' | H5 | 128.3° | 116.7° |
| C4' | O4' | C1' | H14 | 78.3° | 78.5° |
| C5' | O5' | P | OP1 | 35.3° | 55.0° |
| C5' | O5' | P | OP3 | 138.3° | 175.0° |
| C5' | O5' | P | OP2 | 89.0° | 65.0° |
| O5' | C5' | H2 | H3 | 123.3° | 120.1° |
| O5' | C5' | C4' | H4 | 164.0° | 54.5° |
| C4T | C6T | C7T | H9 | 118.1° | 120.0° |
| C4T | C6T | C7T | H10 | 118.1° | 120.0° |
| C6T | C4T | C5T | N3T | 177.9° | 179.9° |
| C6T | C4T | C5T | N1T | 177.1° | 180.0° |
| C6T | C4T | N3T | N2T | 177.4° | 179.7° |
| C6T | C4T | C5T | H8 | 2.9° | 0.1° |
| C4T | C6T | H9 | H10 | 125.3° | 120.0° |
| C4T | C6T | C7T | H11 | 180.0° | 60.0° |
| C4T | C6T | C7T | H12 | 60.0° | 180.0° |
| C4T | C6T | C7T | H13 | 60.0° | 60.0° |
| C7T | C6T | C4T | C5T | 102.6° | 125.0° |
| C7T | C6T | C4T | N3T | 74.9° | 55.0° |
| C7T | C6T | H9 | H10 | 125.3° | 120.0° |
| C6T | C7T | H11 | H12 | 120.0° | 120.0° |
| C6T | C7T | H11 | H13 | 120.0° | 120.0° |
| C6T | C7T | H12 | H13 | 120.0° | 120.0° |
| C4T | C5T | N1T | H8 | 180.0° | 180.0° |
| C5T | C4T | N3T | N2T | 0.6° | 0.2° |
| C4T | C5T | N1T | C2' | 175.6° | 180.0° |
| C4T | C5T | N1T | N2T | 0.7° | 0.3° |
| C5T | C4T | C6T | H9 | 139.3° | 115.0° |
| C5T | C4T | C6T | H10 | 15.5° | 5.0° |
| N3T | C4T | C5T | N1T | 0.8° | 0.0° |
| C4T | N3T | N2T | N1T | 0.2° | 0.4° |
| N3T | C4T | C5T | H8 | 179.2° | 180.0° |
| N3T | C4T | C6T | H9 | 43.2° | 65.1° |
| N3T | C4T | C6T | H10 | 167.0° | 174.9° |
| C5T | N1T | N2T | N3T | 0.3° | 0.4° |
| C5T | N1T | C2' | N2T | 174.7° | 179.7° |
| C5T | N1T | C2' | C1' | 26.1° | 28.5° |
| C5T | N1T | C2' | H7 | 150.5° | 152.2° |
| OP1 | P | O5' | OP3 | 103.0° | 120.0° |
| OP1 | P | O5' | OP2 | 124.3° | 120.0° |
| OP1 | P | OP3 | OP2 | 121.4° | 120.0° |
| OP1 | P | OP2 | H1 | 0.0° | 180.0° |
| OP1 | P | OP3 | H19 | 0.0° | 60.0° |
| N3T | N2T | N1T | C2' | 176.5° | 179.8° |
| N1T | C2' | C1' | H7 | 125.9° | 123.6° |
| N1T | C2' | C1' | O4' | 164.8° | 155.2° |
| N1T | C2' | C1' | N9 | 82.7° | 86.3° |
| N1T | C2' | C3' | H5 | 89.8° | 102.2° |
| C2' | N1T | C5T | H8 | 4.4° | 0.0° |
| N1T | C2' | C1' | H14 | 43.4° | 36.6° |
| N2T | N1T | C2' | C1' | 159.2° | 151.2° |
| N2T | N1T | C2' | H7 | 34.8° | 27.5° |
| N2T | N1T | C5T | H8 | 179.3° | 179.8° |
| C2' | C1' | O4' | N9 | 114.9° | 118.5° |
| C2' | C1' | O4' | H14 | 120.6° | 118.6° |
| C2' | C1' | N9 | H14 | 125.0° | 122.9° |
| C2' | C1' | N9 | C4 | 110.8° | 85.0° |
| C2' | C1' | N9 | C8 | 74.1° | 95.3° |
| C1' | C2' | C3' | H5 | 151.9° | 139.6° |
| O4' | C1' | N9 | H14 | 124.1° | 123.0° |
| O4' | C1' | N9 | C4 | 138.2° | 160.9° |
| O4' | C1' | N9 | C8 | 36.8° | 18.8° |
| C1' | O4' | C4' | H4 | 94.5° | 93.0° |
| O4' | C1' | C2' | H7 | 69.3° | 81.1° |
| O5' | P | OP3 | OP2 | 132.9° | 120.0° |
| O5' | P | OP2 | H1 | 121.7° | 60.0° |
| P | O5' | C5' | H2 | 39.9° | 60.0° |
| P | O5' | C5' | H3 | 82.4° | 60.0° |
| O5' | P | OP3 | H19 | 105.7° | 179.9° |
| C1' | N9 | C4 | N3 | 1.4° | 0.1° |
| C1' | N9 | C4 | C8 | 175.7° | 179.7° |
| C1' | N9 | C4 | C5 | 177.9° | 180.0° |
| C1' | N9 | C8 | N7 | 177.7° | 179.8° |
| N9 | C1' | C2' | H7 | 43.2° | 37.3° |
| C1' | N9 | C8 | H15 | 2.3° | 0.1° |
| OP3 | P | OP2 | H1 | 117.1° | 60.0° |
| OP2 | P | OP3 | H19 | 121.3° | 60.0° |
| N3 | C4 | N9 | C5 | 179.4° | 179.9° |
| N3 | C4 | N9 | C8 | 177.1° | 179.8° |
| C4 | N3 | C2 | N1 | 4.6° | 0.0° |
| N3 | C4 | C5 | N7 | 177.6° | 180.0° |
| N3 | C4 | C5 | C6 | 1.2° | 0.1° |
| C4 | N3 | C2 | H16 | 175.4° | 180.0° |
| C2 | N3 | C4 | N9 | 176.7° | 179.9° |
| C2 | N3 | C4 | C5 | 4.0° | 0.0° |
| N3 | C2 | N1 | H16 | 180.0° | 180.0° |
| N3 | C2 | N1 | C6 | 2.0° | 0.0° |
| C4 | N9 | C8 | N7 | 1.9° | 0.4° |
| N9 | C4 | C5 | N7 | 1.9° | 0.1° |
| N9 | C4 | C5 | C6 | 179.4° | 180.0° |
| C4 | N9 | C1' | H14 | 14.2° | 37.9° |
| C4 | N9 | C8 | H15 | 178.1° | 179.7° |
| C8 | N9 | C4 | C5 | 2.3° | 0.3° |
| N9 | C8 | N7 | H15 | 180.0° | 179.9° |
| N9 | C8 | N7 | C5 | 0.6° | 0.4° |
| C8 | N9 | C1' | H14 | 160.9° | 141.8° |
| C4 | C5 | N7 | C8 | 0.8° | 0.2° |
| C4 | C5 | N7 | C6 | 178.3° | 179.9° |
| C4 | C5 | C6 | N1 | 1.4° | 0.1° |
| C4 | C5 | C6 | N6 | 179.7° | 180.0° |
| C2 | N1 | C6 | C5 | 1.1° | 0.1° |
| C2 | N1 | C6 | N6 | 179.9° | 180.0° |
| C8 | N7 | C5 | C6 | 179.1° | 179.7° |
| N7 | C5 | C6 | N1 | 179.6° | 180.0° |
| N7 | C5 | C6 | N6 | 1.5° | 0.1° |
| C5 | N7 | C8 | H15 | 179.4° | 179.7° |
| C5 | C6 | N1 | N6 | 178.8° | 179.9° |
| C5 | C6 | N6 | H17 | 178.8° | 0.2° |
| C5 | C6 | N6 | H18 | 61.2° | 180.0° |
| C6 | N1 | C2 | H16 | 178.0° | 180.0° |
| N1 | C6 | N6 | H17 | 0.0° | 179.9° |
| N1 | C6 | N6 | H18 | 120.0° | 0.1° |
| C6 | N6 | H17 | H18 | 120.0° | 179.9° |
| H2 | C5' | C4' | H4 | 45.1° | 174.6° |
| H3 | C5' | C4' | H4 | 77.2° | 65.5° |
| H4 | C4' | C3' | H5 | 116.1° | 123.9° |
| H5 | C3' | O3' | H6 | 60.2° | 61.2° |
| H5 | C3' | C2' | H7 | 37.4° | 21.3° |
| H7 | C2' | C1' | H14 | 169.3° | 160.2° |
| H9 | C6T | C7T | H11 | 61.9° | 60.0° |
| H9 | C6T | C7T | H12 | 178.1° | 60.0° |
| H9 | C6T | C7T | H13 | 58.1° | 180.0° |
| H10 | C6T | C7T | H11 | 61.8° | 180.0° |
| H10 | C6T | C7T | H12 | 58.1° | 60.0° |
| H10 | C6T | C7T | H13 | 178.1° | 60.0° |
| H11 | C7T | H12 | H13 | 120.0° | 120.0° |
