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A99

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C'O2Gsing1.43Å1.43Å
C'C3'sing1.51Å1.50Å
C'CM'sing1.53Å1.53Å
N1C2doub1.32Å1.35ÅAromatic
N1C6sing1.33Å1.36ÅAromatic
C2N3sing1.32Å1.35ÅAromatic
N3C4doub1.33Å1.36ÅAromatic
C4C5sing1.41Å1.48ÅAromatic
C4N9sing1.37Å1.34ÅAromatic
C5C6doub1.41Å1.50ÅAromatic
C5N7sing1.35Å1.35ÅAromatic
C6N6sing1.38Å1.36Å
N7C8doub1.30Å1.37ÅAromatic
C8N9sing1.36Å1.34ÅAromatic
N9C1Bsing1.47Å1.50Å
PAO1Adoub1.48Å1.51Å
PAO2Asing1.61Å1.52Å
PAO3Asing1.61Å1.60Å
PAO5'sing1.61Å1.62Å
PBO1Bdoub1.48Å1.52Å
PBO2Bsing1.61Å1.52Å
PBO3Asing1.61Å1.60Å
PBO3Bsing1.61Å1.61Å
PGO1Gsing1.61Å1.52Å
PGO2Gsing1.61Å1.62Å
PGO3Bsing1.61Å1.61Å
PGO3Gdoub1.48Å1.51Å
O'LN2'sing1.22Å1.23Å
O'MN2'doub1.22Å1.22Å
C1'C2'doub1.38Å1.39ÅAromatic
C1'C6'sing1.38Å1.39ÅAromatic
C1BC2Bsing1.55Å1.51Å
C1BO4'sing1.44Å1.44Å
C2'N2'sing1.48Å1.42Å
C2'C3'sing1.38Å1.51ÅAromatic
O2'C2Bsing1.43Å1.43Å
C2BC3Bsing1.55Å1.51Å
C3'C4'doub1.38Å1.39ÅAromatic
O3'C3Bsing1.43Å1.43Å
C3BC4Bsing1.54Å1.52Å
C4'C5'sing1.38Å1.39ÅAromatic
O4'C4Bsing1.44Å1.44Å
C4BC5Bsing1.53Å1.52Å
C5'C6'doub1.38Å1.39ÅAromatic
O5'C5Bsing1.43Å1.42Å
C'H'sing1.09Å1.10Å
C2H2sing1.08Å1.08Å
N6HN6sing0.97Å1.00Å
N6HN6Asing0.97Å1.00Å
C8H8sing1.08Å1.08Å
C1'H1'sing1.08Å1.08Å
C1BH1Bsing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C2BH2Bsing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C3BH3Bsing1.09Å1.10Å
C4'H4'sing1.08Å1.08Å
C4BH4Bsing1.09Å1.10Å
C5'H5'sing1.08Å1.08Å
C5BH5Bsing1.09Å1.10Å
C5BH5BAsing1.09Å1.10Å
C6'H6'sing1.08Å1.08Å
CM'HM'sing1.09Å1.10Å
CM'HM'Asing1.09Å1.10Å
CM'HM'Bsing1.09Å1.10Å
O2AH2Asing0.97Å0.95Å
O2BHBBsing0.97Å0.95Å
O1GH1Gsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2GC'C3'107.8°109.5°
O2GC'CM'111.2°109.4°
C'O2GPG125.7°123.0°
O2GC'H'112.2°109.4°
C3'C'CM'116.6°109.5°
C'C3'C2'125.7°120.0°
C'C3'C4'116.0°120.0°
C3'C'H'106.4°109.5°
CM'C'H'102.6°109.5°
C'CM'HM'109.5°109.5°
C'CM'HM'A109.4°109.4°
C'CM'HM'B109.5°109.5°
C2N1C6122.2°121.3°
N1C2N3123.5°122.4°
N1C2H2118.3°118.8°
N1C6C5117.1°118.4°
N1C6N6119.9°120.8°
C2N3C4121.4°120.7°
N3C2H2118.2°118.7°
N3C4C5118.2°119.1°
N3C4N9134.4°134.9°
C5C4N9107.3°106.0°
C4C5C6117.6°118.2°
C4C5N7105.3°107.1°
C4N9C8108.0°107.4°
C4N9C1B124.9°126.3°
C6C5N7137.0°134.7°
C5C6N6123.1°120.8°
C5N7C8108.4°109.4°
C6N6HN6109.5°119.9°
C6N6HN6A109.4°120.0°
N7C8N9110.9°110.0°
N7C8H8124.6°125.0°
C8N9C1B127.0°126.3°
N9C8H8124.6°125.0°
N9C1BC2B110.3°110.5°
N9C1BO4'111.8°110.6°
N9C1BH1B106.1°110.6°
O1APAO2A121.2°109.5°
O1APAO3A109.7°109.5°
O1APAO5'109.5°109.4°
O2APAO3A106.1°109.5°
O2APAO5'108.1°109.5°
PAO2AH2A109.5°114.1°
O3APAO5'100.2°109.5°
PAO3APB120.7°134.0°
PAO5'C5B121.5°123.0°
O1BPBO2B121.6°109.5°
O1BPBO3A109.2°109.4°
O1BPBO3B109.2°109.4°
O2BPBO3A107.1°109.5°
O2BPBO3B108.8°109.5°
PBO2BHBB109.5°114.0°
O3APBO3B98.3°109.5°
PBO3BPG119.9°134.0°
O1GPGO2G106.3°109.5°
O1GPGO3B108.1°109.5°
O1GPGO3G120.4°109.5°
PGO1GH1G109.5°114.0°
O2GPGO3B101.9°109.5°
O2GPGO3G110.9°109.5°
O3BPGO3G107.7°109.4°
O'LN2'O'M118.4°120.0°
O'LN2'C2'120.3°120.0°
O'MN2'C2'121.2°120.0°
C2'C1'C6'121.0°120.0°
C1'C2'N2'118.0°120.0°
C1'C2'C3'118.1°120.0°
C2'C1'H1'119.5°120.0°
C1'C6'C5'120.9°120.0°
C6'C1'H1'119.5°120.0°
C1'C6'H6'119.6°120.0°
C2BC1BO4'105.5°103.5°
C1BC2BO2'106.9°110.9°
C1BC2BC3B102.4°102.1°
C2BC1BH1B112.4°110.6°
C1BC2BH2B116.8°111.0°
C1BO4'C4B109.8°106.9°
O4'C1BH1B110.8°110.8°
N2'C2'C3'123.9°120.0°
C2'C3'C4'118.3°120.0°
O2'C2BC3B113.2°110.9°
C2BO2'HO2'109.5°114.1°
O2'C2BH2B106.7°110.8°
C2BC3BO3'112.7°110.5°
C2BC3BC4B101.2°104.2°
C3BC2BH2B110.9°110.9°
C2BC3BH3B114.3°110.5°
C3'C4'C5'120.9°120.0°
C3'C4'H4'119.5°120.0°
O3'C3BC4B113.5°110.5°
C3BO3'HO3'109.5°114.0°
O3'C3BH3B102.1°110.4°
C3BC4BO4'104.6°107.3°
C3BC4BC5B113.4°109.9°
C4BC3BH3B113.5°110.6°
C3BC4BH4B110.8°109.9°
C4'C5'C6'120.9°120.0°
C5'C4'H4'119.6°120.0°
C4'C5'H5'119.5°120.0°
O4'C4BC5B111.4°109.9°
O4'C4BH4B112.9°109.8°
C4BC5BO5'107.2°109.5°
C5BC4BH4B103.9°110.0°
C4BC5BH5B110.2°109.5°
C4BC5BH5BA110.3°109.5°
C6'C5'H5'119.5°120.0°
C5'C6'H6'119.6°120.0°
O5'C5BH5B110.3°109.4°
O5'C5BH5BA110.2°109.5°
HN6N6HN6A109.5°120.0°
H5BC5BH5BA108.7°109.5°
HM'CM'HM'A109.5°109.5°
HM'CM'HM'B109.5°109.5°
HM'ACM'HM'B109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2GC'C3'CM'125.9°120.0°
O2GC'C3'H'120.5°119.9°
O2GC'CM'H'120.1°119.9°
C'O2GPGO1G157.2°65.0°
C'O2GPGO3B89.8°175.0°
C'O2GPGO3G24.6°55.0°
O2GC'C3'C2'138.9°156.7°
O2GC'C3'C4'42.1°23.4°
O2GC'CM'HM'180.0°60.1°
O2GC'CM'HM'A60.0°180.0°
O2GC'CM'HM'B60.0°60.0°
C3'C'CM'H'115.7°120.1°
C3'C'O2GPG100.1°120.0°
C'C3'C2'C1'178.9°180.0°
C'C3'C2'N2'0.7°0.1°
C'C3'C2'C4'179.0°179.9°
C'C3'C4'C5'179.4°179.9°
C'C3'C4'H4'0.6°0.0°
C3'C'CM'HM'55.9°60.0°
C3'C'CM'HM'A175.9°60.0°
C3'C'CM'HM'B64.1°179.9°
CM'C'O2GPG28.9°120.0°
CM'C'C3'C2'13.0°83.3°
CM'C'C3'C4'168.0°96.6°
C'CM'HM'HM'A120.0°119.9°
C'CM'HM'HM'B120.0°120.0°
C'CM'HM'AHM'B120.0°120.0°
N1C2N3H2180.0°180.0°
N1C2N3C40.8°0.1°
C2N1C6C50.5°0.0°
C2N1C6N6179.3°180.0°
C6N1C2N30.5°0.1°
N1C6C5C40.8°0.0°
N1C6C5N6179.8°180.0°
N1C6C5N7179.8°180.0°
C6N1C2H2179.5°179.9°
N1C6N6HN60.0°0.0°
N1C6N6HN6A120.0°180.0°
C2N3C4C51.0°0.0°
C2N3C4N9179.5°180.0°
N3C4C5N9178.8°180.0°
N3C4C5C61.0°0.0°
N3C4C5N7179.7°180.0°
N3C4N9C8179.4°180.0°
N3C4N9C1B2.0°0.1°
C4N3C2H2179.2°179.9°
C4C5C6N7179.0°180.0°
C4C5C6N6179.0°180.0°
C4C5N7C80.5°0.0°
C5C4N9C80.9°0.0°
C5C4N9C1B179.4°179.9°
N9C4C5C6179.9°180.0°
N9C4C5N70.8°0.0°
C4N9C8N70.6°0.0°
C4N9C8C1B178.5°179.9°
C4N9C1BC2B78.7°85.1°
C4N9C1BO4'164.2°160.9°
C4N9C8H8179.4°180.0°
C4N9C1BH1B43.3°37.8°
C6C5N7C8179.6°180.0°
C5C6N6HN6179.8°180.0°
C5C6N6HN6A59.8°0.0°
N7C5C6N60.0°0.0°
C5N7C8N90.0°0.0°
C5N7C8H8180.0°180.0°
C6N6HN6HN6A120.0°179.9°
N7C8N9H8180.0°180.0°
N7C8N9C1B179.1°179.9°
C8N9C1BC2B103.0°95.1°
C8N9C1BO4'14.1°19.0°
C8N9C1BH1B135.1°142.1°
N9C1BC2BO4'120.9°118.5°
N9C1BC2BH1B118.1°122.8°
N9C1BO4'H1B118.2°123.0°
N9C1BC2BO2'149.5°86.3°
N9C1BC2BC3B91.3°155.5°
N9C1BO4'C4B112.7°158.5°
C1BN9C8H80.9°0.1°
N9C1BC2BH2B30.1°37.3°
O1APAO2AO3A125.7°120.1°
O1APAO2AO5'127.5°120.0°
O1APAO3AO5'115.2°120.0°
O1APAO3APB32.5°40.0°
O1APAO5'C5B39.1°55.0°
O1APAO2AH2A0.0°180.0°
O2APAO3AO5'112.4°120.0°
O2APAO3APB100.0°80.1°
O2APAO5'C5B173.0°65.0°
PAO3APBO1B45.3°40.1°
PAO3APBO2B88.2°80.0°
PAO3APBO3B159.1°160.0°
O3APAO5'C5B76.2°175.0°
O3APAO2AH2A125.7°60.0°
O5'PAO3APB147.7°159.9°
PAO5'C5BC4B140.3°180.0°
PAO5'C5BH5B99.7°60.0°
PAO5'C5BH5BA20.3°60.0°
O5'PAO2AH2A127.5°60.0°
O1BPBO2BO3A126.4°120.0°
O1BPBO2BO3B128.2°120.0°
O1BPBO3AO3B113.8°119.9°
O1BPBO3BPG131.7°45.1°
O1BPBO2BHBB0.0°180.0°
O2BPBO3AO3B112.7°120.1°
O2BPBO3BPG3.1°74.9°
O3APBO3BPG114.5°165.0°
O3APBO2BHBB126.4°60.1°
PBO3BPGO1G59.6°79.9°
PBO3BPGO2G171.3°160.0°
PBO3BPGO3G72.0°40.1°
O3BPBO2BHBB128.2°60.0°
O1GPGO2GO3B113.1°120.0°
O1GPGO2GO3G132.5°120.0°
O1GPGO3BO3G131.5°120.0°
O2GPGO3BO3G116.7°120.0°
PGO2GC'H'143.1°0.0°
O2GPGO1GH1G127.0°60.0°
O3BPGO1GH1G124.2°60.0°
O3GPGO1GH1G0.0°180.0°
O'LN2'O'MC2'179.5°180.0°
O'LN2'C2'C1'90.8°6.1°
O'LN2'C2'C3'89.6°173.7°
O'MN2'C2'C1'89.7°173.9°
O'MN2'C2'C3'89.9°6.2°
C2'C1'C6'H1'180.0°179.8°
C1'C2'N2'C3'179.6°179.9°
C1'C2'C3'C4'0.1°0.1°
C2'C1'C6'C5'0.2°0.0°
C2'C1'C6'H6'179.8°180.0°
C6'C1'C2'N2'180.0°180.0°
C6'C1'C2'C3'0.3°0.1°
C1'C6'C5'C4'0.2°0.1°
C1'C6'C5'H6'180.0°180.0°
C1'C6'C5'H5'179.8°180.0°
C2BC1BO4'H1B121.9°118.6°
C1BC2BO2'C3B112.0°112.7°
C1BC2BO2'H2B125.7°123.7°
C1BC2BC3BH2B125.4°118.2°
C1BC2BC3BO3'161.2°97.8°
C1BC2BC3BC4B39.6°20.9°
C2BC1BO4'C4B7.3°40.1°
C1BC2BO2'HO2'180.0°179.9°
C1BC2BC3BH3B82.7°139.7°
O4'C1BC2BO2'89.6°155.2°
O4'C1BC2BC3B29.7°37.0°
C1BO4'C4BC3B18.2°26.5°
C1BO4'C4BC5B141.1°145.9°
O4'C1BC2BH2B151.0°81.2°
C1BO4'C4BH4B102.4°92.9°
N2'C2'C3'C4'179.7°180.0°
N2'C2'C1'H1'0.0°0.2°
C2'C3'C4'C5'0.3°0.0°
C2'C3'C'H'100.6°36.8°
C3'C2'C1'H1'179.7°179.6°
C2'C3'C4'H4'179.7°179.9°
O2'C2BC3BH2B119.9°123.5°
O2'C2BC3BO3'46.5°20.4°
O2'C2BC3BC4B75.1°139.1°
O2'C2BC1BH1B31.3°36.5°
O2'C2BC3BH3B162.6°102.1°
C2BC3BO3'C4B114.3°114.8°
C2BC3BO3'H3B123.1°122.6°
C2BC3BC4BH3B122.9°118.8°
C2BC3BC4BO4'35.9°2.0°
C2BC3BC4BC5B157.5°121.4°
C3BC2BC1BH1B150.6°81.7°
C3BC2BO2'HO2'68.0°67.3°
C2BC3BO3'HO3'180.0°61.5°
C2BC3BC4BH4B86.1°117.3°
C3'C4'C5'H4'180.0°179.9°
C3'C4'C5'C6'0.4°0.1°
C4'C3'C'H'78.5°143.3°
C3'C4'C5'H5'179.5°180.0°
O3'C3BC4BH3B116.1°122.5°
O3'C3BC4BO4'156.9°120.7°
O3'C3BC4BC5B81.5°119.9°
O3'C3BC2BH2B73.4°144.0°
O3'C3BC4BH4B35.0°1.3°
C3BC4BO4'C5B122.9°119.4°
C3BC4BO4'H4B120.6°119.4°
C3BC4BC5BH4B120.5°121.1°
C3BC4BC5BO5'63.2°175.0°
C4BC3BC2BH2B165.0°97.4°
C4BC3BO3'HO3'65.7°176.2°
C3BC4BC5BH5B176.8°55.1°
C3BC4BC5BH5BA56.8°65.0°
C4'C5'C6'H5'180.0°179.9°
C4'C5'C6'H6'179.8°179.9°
O4'C4BC5BH4B121.8°121.1°
O4'C4BC5BO5'54.5°67.1°
C4BO4'C1BH1B129.2°78.5°
O4'C4BC3BH3B87.0°116.8°
O4'C4BC5BH5B65.5°172.9°
O4'C4BC5BH5BA174.5°52.9°
C4BC5BO5'H5B120.0°120.0°
C4BC5BO5'H5BA120.0°120.0°
C5BC4BC3BH3B34.6°2.6°
C4BC5BH5BH5BA120.9°120.1°
C5'C6'C1'H1'179.8°179.8°
C6'C5'C4'H4'179.6°180.0°
O5'C5BC4BH4B176.3°53.9°
O5'C5BH5BH5BA120.9°120.0°
H'C'CM'HM'59.9°180.0°
H'C'CM'HM'A60.1°60.1°
H'C'CM'HM'B179.9°59.9°
H1'C1'C6'H6'0.2°0.2°
H1BC1BC2BH2B88.1°160.1°
HO2'O2'C2BH2B54.2°56.3°
H2BC2BC3BH3B42.6°21.5°
HO3'O3'C3BH3B56.9°61.1°
H3BC3BC4BH4B151.0°123.8°
H4'C4'C5'H5'0.4°0.1°
H4BC4BC5BH5B56.3°66.0°
H4BC4BC5BH5BA63.7°173.9°
H5'C5'C6'H6'0.2°0.0°
HM'CM'HM'AHM'B120.0°120.1°

222624

PDB entries from 2024-07-17

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