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Summary Geometry Related PDB entries

A7W

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.36Å	1.38Å	Aromatic
C1	C3	doub	1.39Å	1.38Å	Aromatic
C2	C6	doub	1.40Å	1.38Å	Aromatic
C3	C8	sing	1.38Å	1.38Å	Aromatic
C4	C6	sing	1.41Å	1.39Å	Aromatic
C4	C9	doub	1.37Å	1.38Å	Aromatic
C5	C9	sing	1.40Å	1.38Å	Aromatic
C5	N10	doub	1.31Å	1.33Å	Aromatic
C6	C7	sing	1.42Å	1.40Å	Aromatic
C7	C8	doub	1.41Å	1.39Å	Aromatic
C7	N10	sing	1.34Å	1.35Å	Aromatic
C8	N11	sing	1.39Å	1.41Å
C9	O12	sing	1.36Å	1.36Å
C1	H1	sing	1.08Å	1.08Å
C2	H2	sing	1.08Å	1.08Å
C3	H3	sing	1.08Å	1.08Å
C4	H4	sing	1.08Å	1.08Å
C5	H5	sing	1.08Å	1.08Å
N11	H111	sing	0.97Å	1.00Å
N11	H112	sing	0.97Å	1.00Å
O12	H12	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	C3	120.5°	121.0°
C1	C2	C6	119.2°	119.9°
C2	C1	H1	119.8°	119.5°
C1	C2	H2	120.4°	120.1°
C1	C3	C8	120.2°	120.8°
C3	C1	H1	119.7°	119.5°
C1	C3	H3	119.9°	119.6°
C2	C6	C4	119.2°	121.2°
C2	C6	C7	121.2°	119.8°
C6	C2	H2	120.4°	120.0°
C3	C8	C7	120.3°	119.5°
C3	C8	N11	120.2°	120.3°
C8	C3	H3	119.9°	119.5°
C6	C4	C9	116.7°	118.1°
C4	C6	C7	119.5°	119.0°
C6	C4	H4	121.7°	120.9°
C4	C9	C5	120.7°	119.8°
C4	C9	O12	121.8°	120.1°
C9	C4	H4	121.6°	121.0°
C9	C5	N10	123.0°	121.7°
C5	C9	O12	117.5°	120.1°
C9	C5	H5	118.5°	119.2°
C5	N10	C7	117.1°	121.4°
N10	C5	H5	118.5°	119.1°
C6	C7	C8	118.6°	119.0°
C6	C7	N10	122.9°	120.0°
C8	C7	N10	118.4°	121.0°
C7	C8	N11	119.5°	120.2°
C8	N11	H111	109.5°	120.0°
C8	N11	H112	109.5°	120.0°
C9	O12	H12	109.5°	114.0°
H111	N11	H112	109.5°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	C3	H1	180.0°	179.7°
C1	C2	C6	H2	180.0°	179.9°
C2	C1	C3	C8	0.3°	0.0°
C1	C2	C6	C4	179.5°	180.0°
C1	C2	C6	C7	1.0°	0.1°
C2	C1	C3	H3	179.8°	180.0°
C3	C1	C2	C6	0.8°	0.0°
C1	C3	C8	H3	180.0°	180.0°
C1	C3	C8	C7	0.2°	0.0°
C1	C3	C8	N11	178.3°	180.0°
C3	C1	C2	H2	179.1°	179.9°
C2	C6	C4	C7	178.5°	179.9°
C2	C6	C4	C9	177.7°	179.9°
C2	C6	C7	C8	0.5°	0.1°
C2	C6	C7	N10	176.9°	179.9°
C6	C2	C1	H1	179.1°	179.7°
C2	C6	C4	H4	2.3°	0.1°
C3	C8	C7	C6	0.1°	0.1°
C3	C8	C7	N11	178.5°	180.0°
C3	C8	C7	N10	177.6°	180.0°
C8	C3	C1	H1	179.7°	179.7°
C3	C8	N11	H111	180.0°	0.0°
C3	C8	N11	H112	60.0°	180.0°
C6	C4	C9	H4	180.0°	180.0°
C6	C4	C9	C5	0.2°	0.0°
C4	C6	C7	C8	179.0°	180.0°
C4	C6	C7	N10	1.6°	0.0°
C6	C4	C9	O12	180.0°	180.0°
C4	C6	C2	H2	0.5°	0.1°
C4	C9	C5	O12	179.8°	180.0°
C4	C9	C5	N10	0.2°	0.1°
C9	C4	C6	C7	0.9°	0.0°
C4	C9	C5	H5	179.7°	180.0°
C4	C9	O12	H12	180.0°	90.0°
C9	C5	N10	H5	180.0°	179.9°
C9	C5	N10	C7	0.9°	0.1°
C5	C9	C4	H4	179.8°	180.0°
C5	C9	O12	H12	0.2°	90.0°
C5	N10	C7	C6	1.5°	0.1°
C5	N10	C7	C8	179.0°	180.0°
N10	C5	C9	O12	180.0°	179.9°
C6	C7	C8	N10	177.6°	180.0°
C6	C7	C8	N11	178.4°	180.0°
C7	C6	C2	H2	179.0°	180.0°
C7	C6	C4	H4	179.2°	180.0°
C7	C8	C3	H3	179.8°	179.9°
C7	C8	N11	H111	1.6°	180.0°
C7	C8	N11	H112	118.5°	0.0°
N10	C7	C8	N11	0.8°	0.0°
C7	N10	C5	H5	179.1°	180.0°
N11	C8	C3	H3	1.8°	0.0°
C8	N11	H111	H112	120.0°	180.0°
O12	C9	C4	H4	0.0°	0.0°
O12	C9	C5	H5	0.0°	0.0°
H1	C1	C2	H2	0.9°	0.3°
H1	C1	C3	H3	0.3°	0.4°

250359

PDB entries from 2026-03-11

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