A6G
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP1 | P | doub | 1.48Å | 1.47Å | |
| O5' | P | sing | 1.61Å | 1.63Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| P | OP3 | sing | 1.61Å | 1.59Å | |
| C2 | N1 | sing | 1.36Å | 1.38Å | |
| C6 | N1 | sing | 1.35Å | 1.44Å | |
| N1 | HN1 | sing | 0.97Å | 1.00Å | |
| N3 | C2 | doub | 1.31Å | 1.32Å | |
| C2 | N2 | sing | 1.37Å | 1.36Å | |
| N2 | HN2 | sing | 0.97Å | 1.00Å | |
| N2 | HN2A | sing | 0.97Å | 1.00Å | |
| C4 | N3 | sing | 1.34Å | 1.37Å | |
| N9 | C4 | sing | 1.37Å | 1.40Å | Aromatic |
| C4 | C5 | doub | 1.40Å | 1.37Å | Aromatic |
| N7 | C5 | sing | 1.35Å | 1.40Å | Aromatic |
| C5 | C6 | sing | 1.42Å | 1.42Å | |
| C6 | O6 | doub | 1.22Å | 1.24Å | |
| C8 | N7 | doub | 1.30Å | 1.32Å | Aromatic |
| N9 | C8 | sing | 1.36Å | 1.39Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| C1' | N9 | sing | 1.47Å | 1.49Å | |
| C2' | C1' | sing | 1.53Å | 1.54Å | |
| C1' | C6' | sing | 1.53Å | 1.51Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C3' | C2' | sing | 1.53Å | 1.51Å | |
| O2' | C2' | sing | 1.43Å | 1.45Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| O3' | C3' | sing | 1.43Å | 1.40Å | |
| C3' | C4' | sing | 1.53Å | 1.53Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C5' | C4' | sing | 1.53Å | 1.54Å | |
| C4' | O4' | sing | 1.43Å | 1.41Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C6' | sing | 1.43Å | 1.45Å | |
| C5' | O5' | sing | 1.43Å | 1.43Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| C6' | H6' | sing | 1.09Å | 1.10Å | |
| C6' | H6'A | sing | 1.09Å | 1.10Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | O5' | 109.3° | 109.5° |
| OP1 | P | OP2 | 114.6° | 109.5° |
| OP1 | P | OP3 | 110.0° | 109.5° |
| O5' | P | OP2 | 105.2° | 109.5° |
| O5' | P | OP3 | 102.3° | 109.5° |
| P | O5' | C5' | 124.4° | 123.0° |
| OP2 | P | OP3 | 114.4° | 109.4° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| P | OP3 | HOP3 | 109.5° | 114.1° |
| C2 | N1 | C6 | 122.4° | 120.3° |
| C2 | N1 | HN1 | 118.8° | 119.9° |
| N1 | C2 | N3 | 122.4° | 121.9° |
| N1 | C2 | N2 | 118.4° | 119.0° |
| C6 | N1 | HN1 | 118.8° | 119.8° |
| N1 | C6 | C5 | 114.5° | 118.3° |
| N1 | C6 | O6 | 120.5° | 120.8° |
| N3 | C2 | N2 | 119.1° | 119.1° |
| C2 | N3 | C4 | 115.4° | 121.1° |
| C2 | N2 | HN2 | 120.0° | 120.0° |
| C2 | N2 | HN2A | 120.0° | 120.0° |
| HN2 | N2 | HN2A | 120.0° | 120.0° |
| N3 | C4 | N9 | 126.8° | 134.2° |
| N3 | C4 | C5 | 127.5° | 119.7° |
| N9 | C4 | C5 | 105.5° | 106.0° |
| C4 | N9 | C8 | 106.0° | 107.5° |
| C4 | N9 | C1' | 124.6° | 126.2° |
| C4 | C5 | N7 | 111.4° | 107.3° |
| C4 | C5 | C6 | 117.4° | 118.5° |
| N7 | C5 | C6 | 131.1° | 134.1° |
| C5 | N7 | C8 | 104.3° | 109.3° |
| C5 | C6 | O6 | 124.9° | 120.8° |
| N7 | C8 | N9 | 112.6° | 109.8° |
| N7 | C8 | H8 | 123.7° | 125.1° |
| N9 | C8 | H8 | 123.7° | 125.1° |
| C8 | N9 | C1' | 129.4° | 126.3° |
| N9 | C1' | C2' | 108.7° | 109.5° |
| N9 | C1' | C6' | 116.3° | 109.5° |
| N9 | C1' | H1' | 105.5° | 109.5° |
| C2' | C1' | C6' | 110.2° | 109.2° |
| C2' | C1' | H1' | 112.2° | 109.6° |
| C1' | C2' | C3' | 112.0° | 109.1° |
| C1' | C2' | O2' | 105.6° | 109.5° |
| C1' | C2' | H2' | 110.6° | 109.5° |
| C6' | C1' | H1' | 103.8° | 109.5° |
| C1' | C6' | O4' | 108.8° | 109.4° |
| C1' | C6' | H6' | 109.7° | 109.5° |
| C1' | C6' | H6'A | 109.7° | 109.4° |
| C3' | C2' | O2' | 110.1° | 109.6° |
| C3' | C2' | H2' | 106.2° | 109.5° |
| C2' | C3' | O3' | 113.5° | 109.5° |
| C2' | C3' | C4' | 113.5° | 109.2° |
| C2' | C3' | H3' | 102.8° | 109.5° |
| O2' | C2' | H2' | 112.5° | 109.5° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| O3' | C3' | C4' | 106.7° | 109.5° |
| O3' | C3' | H3' | 110.1° | 109.6° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C4' | C3' | H3' | 110.2° | 109.5° |
| C3' | C4' | C5' | 110.9° | 109.5° |
| C3' | C4' | O4' | 111.5° | 109.4° |
| C3' | C4' | H4' | 106.6° | 109.5° |
| C5' | C4' | O4' | 107.8° | 109.5° |
| C5' | C4' | H4' | 110.4° | 109.5° |
| C4' | C5' | O5' | 106.3° | 109.5° |
| C4' | C5' | H5' | 110.5° | 109.5° |
| C4' | C5' | H5'A | 110.5° | 109.5° |
| O4' | C4' | H4' | 109.7° | 109.5° |
| C4' | O4' | C6' | 116.8° | 114.2° |
| O4' | C6' | H6' | 109.7° | 109.5° |
| O4' | C6' | H6'A | 109.7° | 109.5° |
| O5' | C5' | H5' | 110.6° | 109.5° |
| O5' | C5' | H5'A | 110.5° | 109.5° |
| H5' | C5' | H5'A | 108.4° | 109.5° |
| H6' | C6' | H6'A | 109.3° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | O5' | OP2 | 123.5° | 120.0° |
| OP1 | P | O5' | OP3 | 116.6° | 120.0° |
| OP1 | P | OP2 | OP3 | 128.4° | 120.0° |
| OP1 | P | O5' | C5' | 44.9° | 55.0° |
| OP1 | P | OP2 | HOP2 | 0.0° | 180.0° |
| OP1 | P | OP3 | HOP3 | 0.0° | 59.9° |
| O5' | P | OP2 | OP3 | 111.5° | 120.0° |
| P | O5' | C5' | C4' | 154.1° | 180.0° |
| P | O5' | C5' | H5' | 34.1° | 60.0° |
| P | O5' | C5' | H5'A | 85.9° | 60.0° |
| O5' | P | OP2 | HOP2 | 120.1° | 59.9° |
| O5' | P | OP3 | HOP3 | 116.1° | 180.0° |
| OP2 | P | O5' | C5' | 168.4° | 65.0° |
| OP2 | P | OP3 | HOP3 | 130.7° | 60.0° |
| OP3 | P | O5' | C5' | 71.8° | 175.0° |
| OP3 | P | OP2 | HOP2 | 128.4° | 60.1° |
| C2 | N1 | C6 | HN1 | 180.0° | 179.6° |
| N1 | C2 | N3 | N2 | 176.9° | 179.9° |
| N1 | C2 | N2 | HN2 | 177.0° | 0.1° |
| N1 | C2 | N2 | HN2A | 3.0° | 180.0° |
| N1 | C2 | N3 | C4 | 2.9° | 0.0° |
| C2 | N1 | C6 | C5 | 3.8° | 0.6° |
| C2 | N1 | C6 | O6 | 173.5° | 180.0° |
| C6 | N1 | C2 | N3 | 6.2° | 0.3° |
| C6 | N1 | C2 | N2 | 176.8° | 179.7° |
| N1 | C6 | C5 | C4 | 1.2° | 0.5° |
| N1 | C6 | C5 | N7 | 177.7° | 179.8° |
| N1 | C6 | C5 | O6 | 177.2° | 179.5° |
| HN1 | N1 | C2 | N3 | 173.8° | 179.9° |
| HN1 | N1 | C2 | N2 | 3.2° | 0.1° |
| HN1 | N1 | C6 | C5 | 176.2° | 179.8° |
| HN1 | N1 | C6 | O6 | 6.5° | 0.3° |
| N3 | C2 | N2 | HN2 | 0.0° | 180.0° |
| N3 | C2 | N2 | HN2A | 180.0° | 0.0° |
| C2 | N3 | C4 | N9 | 176.1° | 180.0° |
| C2 | N3 | C4 | C5 | 2.6° | 0.0° |
| C2 | N2 | HN2 | HN2A | 180.0° | 180.0° |
| N2 | C2 | N3 | C4 | 179.8° | 179.9° |
| N3 | C4 | N9 | C5 | 174.6° | 180.0° |
| N3 | C4 | C5 | N7 | 178.1° | 180.0° |
| N3 | C4 | C5 | C6 | 4.7° | 0.2° |
| N3 | C4 | N9 | C8 | 178.5° | 180.0° |
| N3 | C4 | N9 | C1' | 3.1° | 0.1° |
| N9 | C4 | C5 | N7 | 3.6° | 0.0° |
| N9 | C4 | C5 | C6 | 179.2° | 179.7° |
| C4 | N9 | C8 | N7 | 3.1° | 0.0° |
| C4 | N9 | C8 | C1' | 178.3° | 180.0° |
| C4 | N9 | C8 | H8 | 176.9° | 180.0° |
| C4 | N9 | C1' | C2' | 91.2° | 113.2° |
| C4 | N9 | C1' | C6' | 143.7° | 127.1° |
| C4 | N9 | C1' | H1' | 29.3° | 7.0° |
| C4 | C5 | N7 | C6 | 176.7° | 179.7° |
| C4 | C5 | C6 | O6 | 178.4° | 180.0° |
| C4 | C5 | N7 | C8 | 1.7° | 0.0° |
| C5 | C4 | N9 | C8 | 3.9° | 0.0° |
| C5 | C4 | N9 | C1' | 177.7° | 180.0° |
| N7 | C5 | C6 | O6 | 5.1° | 0.3° |
| C5 | N7 | C8 | N9 | 0.9° | 0.0° |
| C5 | N7 | C8 | H8 | 179.1° | 180.0° |
| C6 | C5 | N7 | C8 | 178.4° | 179.7° |
| N7 | C8 | N9 | H8 | 180.0° | 179.9° |
| N7 | C8 | N9 | C1' | 178.6° | 180.0° |
| C8 | N9 | C1' | C2' | 90.8° | 66.8° |
| C8 | N9 | C1' | C6' | 34.3° | 52.9° |
| C8 | N9 | C1' | H1' | 148.7° | 172.9° |
| H8 | C8 | N9 | C1' | 1.4° | 0.0° |
| N9 | C1' | C2' | C6' | 128.6° | 119.9° |
| N9 | C1' | C2' | H1' | 116.2° | 120.1° |
| N9 | C1' | C6' | H1' | 115.4° | 120.1° |
| N9 | C1' | C2' | C3' | 76.5° | 62.9° |
| N9 | C1' | C2' | O2' | 163.7° | 177.1° |
| N9 | C1' | C2' | H2' | 41.7° | 57.0° |
| N9 | C1' | C6' | O4' | 67.6° | 62.3° |
| N9 | C1' | C6' | H6' | 52.4° | 57.7° |
| N9 | C1' | C6' | H6'A | 172.4° | 177.7° |
| C2' | C1' | C6' | H1' | 120.3° | 120.1° |
| C1' | C2' | C3' | O2' | 117.1° | 119.9° |
| C1' | C2' | C3' | H2' | 120.8° | 119.9° |
| C1' | C2' | O2' | H2' | 120.8° | 120.2° |
| C1' | C2' | O2' | HO2' | 180.0° | 180.0° |
| C1' | C2' | C3' | O3' | 168.2° | 176.9° |
| C1' | C2' | C3' | C4' | 46.1° | 57.0° |
| C1' | C2' | C3' | H3' | 72.9° | 63.0° |
| C2' | C1' | C6' | O4' | 56.7° | 57.6° |
| C2' | C1' | C6' | H6' | 176.7° | 177.5° |
| C2' | C1' | C6' | H6'A | 63.3° | 62.4° |
| C6' | C1' | C2' | C3' | 52.1° | 56.9° |
| C6' | C1' | C2' | O2' | 67.7° | 63.0° |
| C6' | C1' | C2' | H2' | 170.3° | 176.8° |
| C1' | C6' | O4' | C4' | 60.3° | 61.1° |
| C1' | C6' | O4' | H6' | 120.0° | 120.0° |
| C1' | C6' | O4' | H6'A | 120.0° | 119.9° |
| C1' | C6' | H6' | H6'A | 120.3° | 120.0° |
| H1' | C1' | C2' | C3' | 167.3° | 176.9° |
| H1' | C1' | C2' | O2' | 47.4° | 57.0° |
| H1' | C1' | C2' | H2' | 74.5° | 63.2° |
| H1' | C1' | C6' | O4' | 177.0° | 177.6° |
| H1' | C1' | C6' | H6' | 63.0° | 62.4° |
| H1' | C1' | C6' | H6'A | 57.0° | 57.7° |
| C3' | C2' | O2' | H2' | 118.2° | 120.2° |
| C3' | C2' | O2' | HO2' | 58.9° | 60.4° |
| C2' | C3' | O3' | C4' | 125.8° | 119.7° |
| C2' | C3' | O3' | H3' | 114.6° | 120.1° |
| C2' | C3' | C4' | H3' | 114.6° | 119.9° |
| C2' | C3' | O3' | HO3' | 180.0° | 180.0° |
| C2' | C3' | C4' | C5' | 165.6° | 177.6° |
| C2' | C3' | C4' | O4' | 45.5° | 57.5° |
| C2' | C3' | C4' | H4' | 74.2° | 62.4° |
| O2' | C2' | C3' | O3' | 51.1° | 57.0° |
| O2' | C2' | C3' | C4' | 71.0° | 63.0° |
| O2' | C2' | C3' | H3' | 170.0° | 177.1° |
| H2' | C2' | O2' | HO2' | 59.3° | 59.8° |
| H2' | C2' | C3' | O3' | 71.0° | 63.2° |
| H2' | C2' | C3' | C4' | 166.9° | 176.8° |
| H2' | C2' | C3' | H3' | 48.0° | 56.9° |
| O3' | C3' | C4' | H3' | 119.5° | 120.2° |
| O3' | C3' | C4' | C5' | 68.6° | 62.5° |
| O3' | C3' | C4' | O4' | 171.3° | 177.4° |
| O3' | C3' | C4' | H4' | 51.6° | 57.5° |
| C4' | C3' | O3' | HO3' | 54.2° | 60.3° |
| C3' | C4' | C5' | O4' | 122.4° | 119.9° |
| C3' | C4' | C5' | H4' | 117.9° | 120.0° |
| C3' | C4' | O4' | H4' | 117.8° | 119.9° |
| C3' | C4' | O4' | C6' | 53.8° | 61.1° |
| C3' | C4' | C5' | O5' | 68.0° | 175.0° |
| C3' | C4' | C5' | H5' | 172.0° | 55.0° |
| C3' | C4' | C5' | H5'A | 52.0° | 65.0° |
| H3' | C3' | O3' | HO3' | 65.4° | 59.9° |
| H3' | C3' | C4' | C5' | 51.0° | 57.7° |
| H3' | C3' | C4' | O4' | 69.2° | 62.4° |
| H3' | C3' | C4' | H4' | 171.1° | 177.7° |
| C5' | C4' | O4' | H4' | 120.2° | 120.1° |
| C5' | C4' | O4' | C6' | 175.8° | 178.9° |
| C4' | C5' | O5' | H5' | 120.0° | 120.0° |
| C4' | C5' | O5' | H5'A | 120.0° | 120.0° |
| C4' | C5' | H5' | H5'A | 121.3° | 120.0° |
| O4' | C4' | C5' | O5' | 54.4° | 65.1° |
| O4' | C4' | C5' | H5' | 65.7° | 174.9° |
| O4' | C4' | C5' | H5'A | 174.4° | 54.9° |
| C4' | O4' | C6' | H6' | 179.7° | 178.9° |
| C4' | O4' | C6' | H6'A | 59.7° | 58.8° |
| H4' | C4' | O4' | C6' | 64.0° | 58.8° |
| H4' | C4' | C5' | O5' | 174.1° | 55.0° |
| H4' | C4' | C5' | H5' | 54.1° | 65.0° |
| H4' | C4' | C5' | H5'A | 65.9° | 175.0° |
| O4' | C6' | H6' | H6'A | 120.3° | 120.1° |
| O5' | C5' | H5' | H5'A | 121.3° | 120.0° |
