A6C
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP1 | P | doub | 1.48Å | 1.48Å | |
| P | O5' | sing | 1.61Å | 1.63Å | |
| P | OP2 | sing | 1.61Å | 1.46Å | |
| P | OP3 | sing | 1.61Å | 1.59Å | |
| C6 | N1 | sing | 1.36Å | 1.39Å | |
| C1' | N1 | sing | 1.46Å | 1.53Å | |
| N1 | C2 | sing | 1.35Å | 1.43Å | |
| C2 | O2 | doub | 1.22Å | 1.25Å | |
| C2 | N3 | sing | 1.33Å | 1.39Å | |
| C4 | N3 | doub | 1.33Å | 1.36Å | |
| C5 | C4 | sing | 1.41Å | 1.45Å | |
| C4 | N4 | sing | 1.38Å | 1.35Å | |
| N4 | HN4 | sing | 0.97Å | 1.00Å | |
| N4 | HN4A | sing | 0.97Å | 1.00Å | |
| C6 | C5 | doub | 1.35Å | 1.37Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C2' | C1' | sing | 1.53Å | 1.55Å | |
| C1' | C6' | sing | 1.53Å | 1.52Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C3' | C2' | sing | 1.53Å | 1.53Å | |
| O2' | C2' | sing | 1.43Å | 1.43Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| O3' | C3' | sing | 1.43Å | 1.42Å | |
| C3' | C4' | sing | 1.53Å | 1.54Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| C4' | O4' | sing | 1.43Å | 1.42Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C6' | sing | 1.43Å | 1.44Å | |
| C5' | O5' | sing | 1.43Å | 1.43Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| C6' | H6' | sing | 1.09Å | 1.10Å | |
| C6' | H6'A | sing | 1.09Å | 1.10Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | O5' | 108.2° | 109.5° |
| OP1 | P | OP2 | 124.0° | 109.5° |
| OP1 | P | OP3 | 107.3° | 109.5° |
| O5' | P | OP2 | 105.6° | 109.5° |
| O5' | P | OP3 | 105.9° | 109.4° |
| P | O5' | C5' | 123.5° | 123.0° |
| OP2 | P | OP3 | 104.5° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| C6 | N1 | C1' | 122.0° | 119.8° |
| C6 | N1 | C2 | 120.1° | 120.3° |
| N1 | C6 | C5 | 120.8° | 119.3° |
| N1 | C6 | H6 | 119.6° | 120.4° |
| C1' | N1 | C2 | 117.9° | 119.9° |
| N1 | C1' | C2' | 111.7° | 109.6° |
| N1 | C1' | C6' | 113.7° | 109.5° |
| N1 | C1' | H1' | 104.0° | 109.5° |
| N1 | C2 | O2 | 117.5° | 119.5° |
| N1 | C2 | N3 | 119.4° | 121.1° |
| O2 | C2 | N3 | 122.8° | 119.4° |
| C2 | N3 | C4 | 120.2° | 120.7° |
| N3 | C4 | C5 | 120.9° | 119.7° |
| N3 | C4 | N4 | 118.0° | 120.2° |
| C5 | C4 | N4 | 121.0° | 120.2° |
| C4 | C5 | C6 | 118.5° | 118.9° |
| C4 | C5 | H5 | 120.7° | 120.6° |
| C4 | N4 | HN4 | 120.0° | 120.0° |
| C4 | N4 | HN4A | 120.0° | 120.0° |
| HN4 | N4 | HN4A | 120.0° | 120.0° |
| C6 | C5 | H5 | 120.8° | 120.5° |
| C5 | C6 | H6 | 119.6° | 120.4° |
| C2' | C1' | C6' | 106.5° | 109.2° |
| C2' | C1' | H1' | 111.6° | 109.5° |
| C1' | C2' | C3' | 111.4° | 109.0° |
| C1' | C2' | O2' | 105.6° | 109.5° |
| C1' | C2' | H2' | 111.3° | 109.5° |
| C6' | C1' | H1' | 109.5° | 109.5° |
| C1' | C6' | O4' | 111.6° | 109.4° |
| C1' | C6' | H6' | 108.8° | 109.5° |
| C1' | C6' | H6'A | 108.8° | 109.5° |
| C3' | C2' | O2' | 111.0° | 109.7° |
| C3' | C2' | H2' | 105.9° | 109.6° |
| C2' | C3' | O3' | 117.0° | 109.5° |
| C2' | C3' | C4' | 113.1° | 109.2° |
| C2' | C3' | H3' | 101.9° | 109.6° |
| O2' | C2' | H2' | 111.7° | 109.5° |
| C2' | O2' | HO2' | 109.5° | 113.9° |
| O3' | C3' | C4' | 112.1° | 109.5° |
| O3' | C3' | H3' | 103.2° | 109.5° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C4' | C3' | H3' | 108.1° | 109.5° |
| C3' | C4' | C5' | 113.0° | 109.5° |
| C3' | C4' | O4' | 109.3° | 109.4° |
| C3' | C4' | H4' | 106.1° | 109.5° |
| C5' | C4' | O4' | 105.8° | 109.5° |
| C5' | C4' | H4' | 109.5° | 109.5° |
| C4' | C5' | O5' | 112.6° | 109.4° |
| C4' | C5' | H5' | 108.4° | 109.4° |
| C4' | C5' | H5'A | 108.5° | 109.5° |
| O4' | C4' | H4' | 113.2° | 109.5° |
| C4' | O4' | C6' | 115.4° | 114.1° |
| O4' | C6' | H6' | 108.8° | 109.5° |
| O4' | C6' | H6'A | 108.8° | 109.5° |
| O5' | C5' | H5' | 108.5° | 109.4° |
| O5' | C5' | H5'A | 108.4° | 109.5° |
| H5' | C5' | H5'A | 110.5° | 109.5° |
| H6' | C6' | H6'A | 110.1° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | O5' | OP2 | 134.7° | 120.1° |
| OP1 | P | O5' | OP3 | 114.8° | 120.0° |
| OP1 | P | OP2 | OP3 | 123.0° | 120.0° |
| OP1 | P | O5' | C5' | 53.4° | 54.9° |
| OP1 | P | OP2 | HOP2 | 0.0° | 60.0° |
| OP1 | P | OP3 | HOP3 | 0.0° | 180.0° |
| O5' | P | OP2 | OP3 | 111.5° | 119.9° |
| P | O5' | C5' | C4' | 159.2° | 180.0° |
| P | O5' | C5' | H5' | 39.2° | 60.1° |
| P | O5' | C5' | H5'A | 80.8° | 60.0° |
| O5' | P | OP2 | HOP2 | 125.4° | 180.0° |
| O5' | P | OP3 | HOP3 | 115.4° | 60.0° |
| OP2 | P | O5' | C5' | 171.9° | 175.0° |
| OP2 | P | OP3 | HOP3 | 133.3° | 59.9° |
| OP3 | P | O5' | C5' | 61.3° | 65.1° |
| OP3 | P | OP2 | HOP2 | 123.0° | 60.0° |
| C6 | N1 | C1' | C2 | 178.2° | 179.8° |
| C6 | N1 | C2 | O2 | 176.4° | 180.0° |
| C6 | N1 | C2 | N3 | 2.9° | 0.1° |
| N1 | C6 | C5 | C4 | 4.4° | 0.0° |
| N1 | C6 | C5 | H6 | 180.0° | 179.9° |
| N1 | C6 | C5 | H5 | 175.6° | 180.0° |
| C6 | N1 | C1' | C2' | 71.4° | 116.3° |
| C6 | N1 | C1' | C6' | 49.2° | 3.4° |
| C6 | N1 | C1' | H1' | 168.1° | 123.5° |
| C1' | N1 | C2 | O2 | 1.9° | 0.2° |
| C1' | N1 | C2 | N3 | 175.3° | 179.7° |
| C1' | N1 | C6 | C5 | 179.7° | 179.8° |
| C1' | N1 | C6 | H6 | 0.3° | 0.2° |
| N1 | C1' | C2' | C6' | 124.7° | 120.0° |
| N1 | C1' | C2' | H1' | 115.9° | 120.2° |
| N1 | C1' | C6' | H1' | 115.8° | 120.1° |
| N1 | C1' | C2' | C3' | 70.7° | 62.9° |
| N1 | C1' | C2' | O2' | 168.7° | 177.1° |
| N1 | C1' | C2' | H2' | 47.3° | 56.9° |
| N1 | C1' | C6' | O4' | 64.6° | 62.3° |
| N1 | C1' | C6' | H6' | 55.4° | 57.6° |
| N1 | C1' | C6' | H6'A | 175.3° | 177.7° |
| N1 | C2 | O2 | N3 | 173.3° | 179.9° |
| N1 | C2 | N3 | C4 | 4.3° | 0.1° |
| C2 | N1 | C6 | C5 | 1.5° | 0.1° |
| C2 | N1 | C6 | H6 | 178.5° | 180.0° |
| C2 | N1 | C1' | C2' | 106.8° | 63.8° |
| C2 | N1 | C1' | C6' | 132.6° | 176.4° |
| C2 | N1 | C1' | H1' | 13.7° | 56.3° |
| O2 | C2 | N3 | C4 | 177.4° | 180.0° |
| C2 | N3 | C4 | C5 | 1.4° | 0.0° |
| C2 | N3 | C4 | N4 | 175.1° | 180.0° |
| N3 | C4 | C5 | N4 | 176.4° | 180.0° |
| N3 | C4 | N4 | HN4 | 0.0° | 0.0° |
| N3 | C4 | N4 | HN4A | 180.0° | 180.0° |
| N3 | C4 | C5 | C6 | 3.0° | 0.0° |
| N3 | C4 | C5 | H5 | 177.0° | 180.0° |
| C5 | C4 | N4 | HN4 | 176.5° | 180.0° |
| C5 | C4 | N4 | HN4A | 3.5° | 0.1° |
| C4 | C5 | C6 | H5 | 180.0° | 180.0° |
| C4 | C5 | C6 | H6 | 175.6° | 179.9° |
| C4 | N4 | HN4 | HN4A | 180.0° | 179.9° |
| N4 | C4 | C5 | C6 | 179.4° | 180.0° |
| N4 | C4 | C5 | H5 | 0.6° | 0.0° |
| H5 | C5 | C6 | H6 | 4.4° | 0.1° |
| C2' | C1' | C6' | H1' | 120.8° | 119.9° |
| C1' | C2' | C3' | O2' | 117.4° | 119.9° |
| C1' | C2' | C3' | H2' | 121.2° | 119.8° |
| C1' | C2' | O2' | H2' | 121.2° | 120.1° |
| C1' | C2' | O2' | HO2' | 180.0° | 180.0° |
| C1' | C2' | C3' | O3' | 176.2° | 176.9° |
| C1' | C2' | C3' | C4' | 51.3° | 57.0° |
| C1' | C2' | C3' | H3' | 64.6° | 62.9° |
| C2' | C1' | C6' | O4' | 58.8° | 57.6° |
| C2' | C1' | C6' | H6' | 178.8° | 177.6° |
| C2' | C1' | C6' | H6'A | 61.2° | 62.3° |
| C6' | C1' | C2' | C3' | 54.0° | 57.0° |
| C6' | C1' | C2' | O2' | 66.6° | 63.0° |
| C6' | C1' | C2' | H2' | 172.0° | 176.9° |
| C1' | C6' | O4' | C4' | 63.2° | 61.1° |
| C1' | C6' | O4' | H6' | 120.0° | 120.0° |
| C1' | C6' | O4' | H6'A | 120.0° | 120.0° |
| C1' | C6' | H6' | H6'A | 119.1° | 120.1° |
| H1' | C1' | C2' | C3' | 173.4° | 176.9° |
| H1' | C1' | C2' | O2' | 52.8° | 56.9° |
| H1' | C1' | C2' | H2' | 68.6° | 63.2° |
| H1' | C1' | C6' | O4' | 179.6° | 177.5° |
| H1' | C1' | C6' | H6' | 60.4° | 62.5° |
| H1' | C1' | C6' | H6'A | 59.6° | 57.6° |
| C3' | C2' | O2' | H2' | 118.0° | 120.3° |
| C3' | C2' | O2' | HO2' | 59.1° | 60.4° |
| C2' | C3' | O3' | C4' | 133.0° | 119.7° |
| C2' | C3' | O3' | H3' | 110.9° | 120.2° |
| C2' | C3' | C4' | H3' | 112.0° | 120.0° |
| C2' | C3' | O3' | HO3' | 180.0° | 180.0° |
| C2' | C3' | C4' | C5' | 166.7° | 177.6° |
| C2' | C3' | C4' | O4' | 49.2° | 57.6° |
| C2' | C3' | C4' | H4' | 73.2° | 62.3° |
| O2' | C2' | C3' | O3' | 66.4° | 57.0° |
| O2' | C2' | C3' | C4' | 66.1° | 62.9° |
| O2' | C2' | C3' | H3' | 178.1° | 177.2° |
| H2' | C2' | O2' | HO2' | 58.9° | 59.9° |
| H2' | C2' | C3' | O3' | 55.0° | 63.2° |
| H2' | C2' | C3' | C4' | 172.5° | 176.9° |
| H2' | C2' | C3' | H3' | 56.6° | 56.9° |
| O3' | C3' | C4' | H3' | 113.1° | 120.1° |
| O3' | C3' | C4' | C5' | 58.4° | 62.5° |
| O3' | C3' | C4' | O4' | 175.9° | 177.5° |
| O3' | C3' | C4' | H4' | 61.7° | 57.6° |
| C4' | C3' | O3' | HO3' | 47.0° | 60.3° |
| C3' | C4' | C5' | O4' | 119.6° | 119.9° |
| C3' | C4' | C5' | H4' | 118.0° | 120.1° |
| C3' | C4' | O4' | H4' | 118.0° | 120.0° |
| C3' | C4' | O4' | C6' | 55.3° | 61.1° |
| C3' | C4' | C5' | O5' | 59.8° | 175.0° |
| C3' | C4' | C5' | H5' | 179.8° | 55.1° |
| C3' | C4' | C5' | H5'A | 60.2° | 65.0° |
| H3' | C3' | O3' | HO3' | 69.1° | 59.8° |
| H3' | C3' | C4' | C5' | 54.7° | 57.6° |
| H3' | C3' | C4' | O4' | 62.9° | 62.3° |
| H3' | C3' | C4' | H4' | 174.7° | 177.7° |
| C5' | C4' | O4' | H4' | 120.0° | 120.0° |
| C5' | C4' | O4' | C6' | 177.3° | 178.9° |
| C4' | C5' | O5' | H5' | 120.0° | 119.9° |
| C4' | C5' | O5' | H5'A | 120.0° | 120.0° |
| C4' | C5' | H5' | H5'A | 118.7° | 120.1° |
| O4' | C4' | C5' | O5' | 59.8° | 65.1° |
| O4' | C4' | C5' | H5' | 60.2° | 175.0° |
| O4' | C4' | C5' | H5'A | 179.8° | 54.9° |
| C4' | O4' | C6' | H6' | 176.8° | 178.9° |
| C4' | O4' | C6' | H6'A | 56.8° | 58.8° |
| H4' | C4' | O4' | C6' | 62.7° | 58.9° |
| H4' | C4' | C5' | O5' | 177.8° | 54.9° |
| H4' | C4' | C5' | H5' | 62.2° | 65.0° |
| H4' | C4' | C5' | H5'A | 57.8° | 174.9° |
| O4' | C6' | H6' | H6'A | 119.2° | 120.0° |
| O5' | C5' | H5' | H5'A | 118.7° | 120.0° |
