A5M
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.50Å | 1.49Å | |
| P | OP2 | sing | 1.62Å | 1.49Å | |
| P | O5' | sing | 1.62Å | 1.59Å | |
| P | OP3 | sing | 1.62Å | 61.17Å | |
| OP2 | HOP2 | sing | 0.98Å | 0.95Å | |
| O5' | C5' | sing | 1.42Å | 1.42Å | |
| C5' | C4' | sing | 1.52Å | 1.50Å | |
| C5' | H5' | sing | 1.09Å | 1.11Å | |
| C5' | H5'' | sing | 1.09Å | 1.12Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C3' | sing | 1.52Å | 1.51Å | |
| C4' | H4' | sing | 1.09Å | 1.12Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C1' | N1 | sing | 1.44Å | 1.47Å | |
| C1' | C2' | sing | 1.52Å | 1.53Å | |
| C1' | H1' | sing | 1.10Å | 1.12Å | |
| N1 | C6 | sing | 1.39Å | 1.37Å | |
| N1 | C2 | sing | 1.42Å | 1.41Å | |
| C6 | C5 | doub | 1.33Å | 1.34Å | |
| C6 | H6 | sing | 1.09Å | 1.10Å | |
| C2 | O2 | doub | 1.23Å | 1.24Å | |
| C2 | N3 | sing | 1.38Å | 1.36Å | |
| N3 | C4 | doub | 1.31Å | 1.34Å | |
| C4 | N4 | sing | 1.38Å | 1.34Å | |
| C4 | C5 | sing | 1.49Å | 1.43Å | |
| N4 | H41 | sing | 0.99Å | 1.02Å | |
| N4 | H42 | sing | 0.99Å | 1.02Å | |
| C5 | H5 | sing | 1.08Å | 1.10Å | |
| C2' | N2' | sing | 1.45Å | 1.47Å | |
| C2' | C3' | sing | 1.52Å | 1.52Å | |
| C2' | H2' | sing | 1.10Å | 1.12Å | |
| N2' | H'1N | sing | 1.00Å | 1.02Å | |
| N2' | H'2N | sing | 1.00Å | 1.02Å | |
| C3' | O3' | sing | 1.43Å | 59.05Å | |
| C3' | H3' | sing | 1.09Å | 1.11Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.98Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 119.5° | 115.3° |
| OP1 | P | O5' | 106.6° | 115.0° |
| OP1 | P | OP3 | 135.1° | 115.0° |
| OP2 | P | O5' | 108.6° | 103.7° |
| OP2 | P | OP3 | 105.4° | 103.3° |
| P | OP2 | HOP2 | 119.5° | 118.9° |
| O5' | P | OP3 | 55.4° | 102.9° |
| P | O5' | C5' | 119.9° | 118.5° |
| P | OP3 | HOP3 | 135.1° | 118.9° |
| O5' | C5' | C4' | 109.9° | 108.7° |
| O5' | C5' | H5' | 112.0° | 109.2° |
| O5' | C5' | H5'' | 112.0° | 109.2° |
| C4' | C5' | H5' | 112.0° | 110.0° |
| C4' | C5' | H5'' | 112.0° | 110.0° |
| C5' | C4' | O4' | 109.4° | 108.1° |
| C5' | C4' | C3' | 114.2° | 113.3° |
| C5' | C4' | H4' | 104.5° | 109.3° |
| H5' | C5' | H5'' | 98.4° | 109.6° |
| O4' | C4' | C3' | 103.2° | 106.0° |
| O4' | C4' | H4' | 115.2° | 107.7° |
| C4' | O4' | C1' | 109.6° | 109.4° |
| C3' | C4' | H4' | 110.6° | 112.1° |
| C4' | C3' | C2' | 101.4° | 102.3° |
| C4' | C3' | O3' | 72.0° | 108.8° |
| C4' | C3' | H3' | 120.0° | 113.5° |
| O4' | C1' | N1 | 108.1° | 109.0° |
| O4' | C1' | C2' | 106.9° | 106.8° |
| O4' | C1' | H1' | 113.8° | 107.5° |
| N1 | C1' | C2' | 114.2° | 112.9° |
| N1 | C1' | H1' | 106.4° | 107.7° |
| C1' | N1 | C6 | 120.9° | 118.7° |
| C1' | N1 | C2 | 118.9° | 122.0° |
| C2' | C1' | H1' | 107.6° | 112.8° |
| C1' | C2' | N2' | 108.6° | 113.1° |
| C1' | C2' | C3' | 101.1° | 102.2° |
| C1' | C2' | H2' | 116.1° | 109.8° |
| C6 | N1 | C2 | 120.3° | 119.2° |
| N1 | C6 | C5 | 121.0° | 122.8° |
| N1 | C6 | H6 | 120.4° | 116.0° |
| N1 | C2 | O2 | 118.8° | 120.9° |
| N1 | C2 | N3 | 119.4° | 118.9° |
| C5 | C6 | H6 | 118.6° | 121.2° |
| C6 | C5 | C4 | 117.7° | 116.4° |
| C6 | C5 | H5 | 118.1° | 123.1° |
| O2 | C2 | N3 | 121.9° | 120.1° |
| C2 | N3 | C4 | 119.8° | 121.0° |
| N3 | C4 | N4 | 118.0° | 120.1° |
| N3 | C4 | C5 | 121.8° | 121.7° |
| N4 | C4 | C5 | 120.1° | 118.2° |
| C4 | N4 | H41 | 118.1° | 118.1° |
| C4 | N4 | H42 | 109.1° | 118.0° |
| C4 | C5 | H5 | 124.2° | 120.5° |
| H41 | N4 | H42 | 109.1° | 123.9° |
| N2' | C2' | C3' | 111.7° | 114.1° |
| N2' | C2' | H2' | 106.3° | 108.6° |
| C2' | N2' | H'1N | 108.6° | 118.4° |
| C2' | N2' | H'2N | 112.5° | 118.5° |
| C3' | C2' | H2' | 113.2° | 108.8° |
| C2' | C3' | O3' | 29.7° | 111.4° |
| C2' | C3' | H3' | 138.5° | 113.4° |
| H'1N | N2' | H'2N | 112.5° | 121.7° |
| O3' | C3' | H3' | 167.9° | 107.5° |
| C3' | O3' | HO3' | 72.0° | 106.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | O5' | 122.5° | 126.6° |
| OP1 | P | OP2 | OP3 | 179.4° | 126.3° |
| OP1 | P | O5' | OP3 | 133.8° | 125.8° |
| OP1 | P | OP2 | HOP2 | 180.0° | 48.9° |
| OP1 | P | O5' | C5' | 56.6° | 180.0° |
| OP1 | P | OP3 | HOP3 | 180.0° | 48.0° |
| OP2 | P | O5' | OP3 | 96.2° | 107.4° |
| OP2 | P | O5' | C5' | 173.4° | 53.2° |
| OP2 | P | OP3 | HOP3 | 0.7° | 78.5° |
| O5' | P | OP2 | HOP2 | 57.5° | 175.4° |
| P | O5' | C5' | C4' | 161.8° | 180.0° |
| P | O5' | C5' | H5' | 73.0° | 59.9° |
| P | O5' | C5' | H5'' | 36.6° | 60.0° |
| O5' | P | OP3 | HOP3 | 101.6° | 173.8° |
| OP3 | P | OP2 | HOP2 | 0.6° | 77.4° |
| OP3 | P | O5' | C5' | 77.2° | 54.2° |
| O5' | C5' | C4' | H5' | 125.3° | 119.5° |
| O5' | C5' | C4' | H5'' | 125.2° | 119.5° |
| O5' | C5' | H5' | H5'' | 118.0° | 119.6° |
| O5' | C5' | C4' | O4' | 63.9° | 62.4° |
| O5' | C5' | C4' | C3' | 51.1° | 179.5° |
| O5' | C5' | C4' | H4' | 172.1° | 54.6° |
| C4' | C5' | H5' | H5'' | 117.9° | 121.2° |
| C5' | C4' | O4' | C3' | 122.0° | 121.8° |
| C5' | C4' | O4' | H4' | 117.4° | 118.0° |
| C5' | C4' | C3' | H4' | 117.6° | 124.4° |
| C5' | C4' | O4' | C1' | 147.2° | 107.5° |
| C5' | C4' | C3' | C2' | 158.9° | 86.8° |
| C5' | C4' | C3' | O3' | 162.9° | 155.2° |
| C5' | C4' | C3' | H3' | 19.1° | 35.6° |
| H5' | C5' | C4' | O4' | 170.8° | 57.2° |
| H5' | C5' | C4' | C3' | 74.1° | 60.0° |
| H5' | C5' | C4' | H4' | 46.9° | 174.1° |
| H5'' | C5' | C4' | O4' | 61.3° | 178.1° |
| H5'' | C5' | C4' | C3' | 176.4° | 60.9° |
| H5'' | C5' | C4' | H4' | 62.6° | 64.9° |
| O4' | C4' | C3' | H4' | 123.8° | 117.2° |
| C4' | O4' | C1' | N1 | 123.2° | 131.2° |
| C4' | O4' | C1' | C2' | 0.2° | 9.0° |
| C4' | O4' | C1' | H1' | 118.9° | 112.3° |
| O4' | C4' | C3' | C2' | 40.2° | 31.6° |
| O4' | C4' | C3' | O3' | 44.2° | 86.4° |
| O4' | C4' | C3' | H3' | 137.8° | 154.1° |
| C3' | C4' | O4' | C1' | 25.3° | 14.3° |
| C4' | C3' | C2' | C1' | 39.4° | 35.8° |
| C4' | C3' | C2' | N2' | 75.9° | 158.3° |
| C4' | C3' | C2' | O3' | 7.7° | 116.1° |
| C4' | C3' | C2' | H3' | 177.4° | 122.5° |
| C4' | C3' | C2' | H2' | 164.2° | 80.3° |
| C4' | C3' | O3' | H3' | 171.6° | 123.2° |
| C4' | C3' | O3' | HO3' | 180.0° | 169.5° |
| H4' | C4' | O4' | C1' | 95.4° | 134.5° |
| H4' | C4' | C3' | C2' | 83.6° | 148.8° |
| H4' | C4' | C3' | O3' | 79.5° | 30.8° |
| H4' | C4' | C3' | H3' | 98.4° | 88.7° |
| O4' | C1' | N1 | C2' | 118.8° | 118.4° |
| O4' | C1' | N1 | H1' | 122.6° | 116.4° |
| O4' | C1' | C2' | H1' | 122.6° | 117.9° |
| O4' | C1' | N1 | C6 | 24.2° | 33.6° |
| O4' | C1' | N1 | C2 | 155.9° | 146.4° |
| O4' | C1' | C2' | N2' | 92.3° | 151.5° |
| O4' | C1' | C2' | C3' | 25.3° | 28.4° |
| O4' | C1' | C2' | H2' | 148.1° | 86.9° |
| N1 | C1' | C2' | H1' | 117.9° | 122.4° |
| C1' | N1 | C6 | C2 | 179.9° | 180.0° |
| C1' | N1 | C6 | C5 | 179.4° | 179.9° |
| C1' | N1 | C6 | H6 | 0.6° | 0.0° |
| C1' | N1 | C2 | O2 | 1.2° | 0.0° |
| C1' | N1 | C2 | N3 | 179.1° | 180.0° |
| N1 | C1' | C2' | N2' | 148.2° | 88.8° |
| N1 | C1' | C2' | C3' | 94.3° | 148.1° |
| N1 | C1' | C2' | H2' | 28.6° | 32.8° |
| C2' | C1' | N1 | C6 | 94.7° | 84.8° |
| C2' | C1' | N1 | C2 | 85.2° | 95.2° |
| C1' | C2' | N2' | C3' | 110.6° | 116.2° |
| C1' | C2' | N2' | H2' | 125.5° | 122.2° |
| C1' | C2' | C3' | H2' | 124.8° | 116.1° |
| C1' | C2' | N2' | H'1N | 180.0° | 46.1° |
| C1' | C2' | N2' | H'2N | 54.7° | 120.5° |
| C1' | C2' | C3' | O3' | 47.1° | 80.3° |
| C1' | C2' | C3' | H3' | 138.0° | 158.3° |
| H1' | C1' | N1 | C6 | 146.8° | 149.9° |
| H1' | C1' | N1 | C2 | 33.3° | 30.1° |
| H1' | C1' | C2' | N2' | 30.3° | 33.7° |
| H1' | C1' | C2' | C3' | 147.9° | 89.4° |
| H1' | C1' | C2' | H2' | 89.2° | 155.2° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| C6 | N1 | C2 | O2 | 179.0° | 180.0° |
| C6 | N1 | C2 | N3 | 0.7° | 0.0° |
| N1 | C6 | C5 | C4 | 0.0° | 0.1° |
| N1 | C6 | C5 | H5 | 179.9° | 180.0° |
| C2 | N1 | C6 | C5 | 0.4° | 0.0° |
| C2 | N1 | C6 | H6 | 179.5° | 180.0° |
| N1 | C2 | O2 | N3 | 179.7° | 180.0° |
| N1 | C2 | N3 | C4 | 0.5° | 0.1° |
| C6 | C5 | C4 | N3 | 0.2° | 0.0° |
| C6 | C5 | C4 | N4 | 179.9° | 180.0° |
| C6 | C5 | C4 | H5 | 180.0° | 180.0° |
| H6 | C6 | C5 | C4 | 180.0° | 180.0° |
| H6 | C6 | C5 | H5 | 0.1° | 0.0° |
| O2 | C2 | N3 | C4 | 179.1° | 180.0° |
| C2 | N3 | C4 | N4 | 179.8° | 180.0° |
| C2 | N3 | C4 | C5 | 0.1° | 0.0° |
| N3 | C4 | N4 | C5 | 179.9° | 180.0° |
| N3 | C4 | N4 | H41 | 180.0° | 6.7° |
| N3 | C4 | N4 | H42 | 54.7° | 173.3° |
| N3 | C4 | C5 | H5 | 179.7° | 180.0° |
| C4 | N4 | H41 | H42 | 125.3° | 180.0° |
| N4 | C4 | C5 | H5 | 0.1° | 0.0° |
| C5 | C4 | N4 | H41 | 0.1° | 173.3° |
| C5 | C4 | N4 | H42 | 125.2° | 6.7° |
| N2' | C2' | C3' | H2' | 119.9° | 121.4° |
| C2' | N2' | H'1N | H'2N | 125.3° | 166.1° |
| N2' | C2' | C3' | O3' | 68.2° | 42.2° |
| N2' | C2' | C3' | H3' | 106.7° | 79.2° |
| C3' | C2' | N2' | H'1N | 69.5° | 162.4° |
| C3' | C2' | N2' | H'2N | 165.3° | 4.2° |
| C2' | C3' | O3' | H3' | 16.3° | 124.7° |
| C2' | C3' | O3' | HO3' | 8.0° | 78.4° |
| H2' | C2' | N2' | H'1N | 54.5° | 76.1° |
| H2' | C2' | N2' | H'2N | 70.8° | 117.3° |
| H2' | C2' | C3' | O3' | 171.9° | 163.6° |
| H2' | C2' | C3' | H3' | 13.2° | 42.2° |
| H3' | C3' | O3' | HO3' | 8.4° | 46.3° |
