A5L
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| F | C2' | sing | 1.40Å | 1.38Å | |
| OP2 | P | doub | 1.48Å | 1.48Å | |
| OP1 | P | sing | 1.61Å | 1.48Å | |
| P | OP3 | sing | 1.61Å | 1.61Å | |
| P | O5' | sing | 1.61Å | 1.61Å | |
| C2 | N1 | doub | 1.32Å | 1.32Å | Aromatic |
| C6 | N1 | sing | 1.33Å | 1.33Å | Aromatic |
| N3 | C2 | sing | 1.32Å | 1.33Å | Aromatic |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| C4 | N3 | doub | 1.33Å | 1.36Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
| C4 | C5 | sing | 1.41Å | 1.37Å | Aromatic |
| N7 | C5 | sing | 1.35Å | 1.40Å | Aromatic |
| C5 | C6 | doub | 1.40Å | 1.41Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.32Å | |
| HN6 | N6 | sing | 0.97Å | 1.00Å | |
| N6 | HN6A | sing | 0.97Å | 1.00Å | |
| C8 | N7 | doub | 1.30Å | 1.31Å | Aromatic |
| H8 | C8 | sing | 1.08Å | 1.08Å | |
| N9 | C8 | sing | 1.36Å | 1.38Å | Aromatic |
| C1' | N9 | sing | 1.47Å | 1.49Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C3' | C2' | sing | 1.55Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| H3' | C3' | sing | 1.09Å | 1.10Å | |
| O3' | C3' | sing | 1.43Å | 1.43Å | |
| C3' | C4' | sing | 1.55Å | 1.54Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| H4' | C4' | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.45Å | 1.43Å | |
| H5' | C5' | sing | 1.09Å | 1.10Å | |
| O5' | C5' | sing | 1.43Å | 1.41Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| OP1 | HOP1 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| F | C2' | C1' | 110.2° | 110.5° |
| F | C2' | C3' | 110.3° | 110.4° |
| F | C2' | H2' | 106.3° | 110.5° |
| OP2 | P | OP1 | 120.7° | 109.4° |
| OP2 | P | OP3 | 107.8° | 109.5° |
| OP2 | P | O5' | 108.3° | 109.5° |
| OP1 | P | OP3 | 108.8° | 109.5° |
| OP1 | P | O5' | 108.9° | 109.5° |
| P | OP1 | HOP1 | 109.5° | 113.9° |
| OP3 | P | O5' | 100.4° | 109.5° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| P | O5' | C5' | 120.3° | 123.0° |
| C2 | N1 | C6 | 118.6° | 121.2° |
| N1 | C2 | N3 | 127.9° | 122.4° |
| N1 | C2 | H2 | 116.1° | 118.8° |
| N1 | C6 | C5 | 120.3° | 118.5° |
| N1 | C6 | N6 | 114.5° | 120.7° |
| N3 | C2 | H2 | 116.1° | 118.8° |
| C2 | N3 | C4 | 111.9° | 120.7° |
| N3 | C4 | N9 | 126.7° | 135.0° |
| N3 | C4 | C5 | 126.7° | 119.0° |
| N9 | C4 | C5 | 106.5° | 106.0° |
| C4 | N9 | C8 | 104.6° | 107.4° |
| C4 | N9 | C1' | 124.4° | 126.3° |
| C4 | C5 | N7 | 111.1° | 107.1° |
| C4 | C5 | C6 | 114.6° | 118.2° |
| N7 | C5 | C6 | 134.3° | 134.7° |
| C5 | N7 | C8 | 102.9° | 109.4° |
| C5 | C6 | N6 | 125.2° | 120.8° |
| C6 | N6 | HN6 | 109.5° | 120.0° |
| C6 | N6 | HN6A | 109.5° | 120.0° |
| HN6 | N6 | HN6A | 109.5° | 120.0° |
| N7 | C8 | H8 | 122.5° | 125.0° |
| N7 | C8 | N9 | 115.0° | 110.0° |
| H8 | C8 | N9 | 122.5° | 125.0° |
| C8 | N9 | C1' | 130.9° | 126.3° |
| N9 | C1' | C2' | 118.0° | 109.9° |
| N9 | C1' | O4' | 110.2° | 109.9° |
| N9 | C1' | H1' | 101.8° | 109.8° |
| C2' | C1' | O4' | 105.7° | 107.5° |
| C2' | C1' | H1' | 106.6° | 109.9° |
| C1' | C2' | C3' | 101.8° | 104.2° |
| C1' | C2' | H2' | 114.2° | 110.5° |
| O4' | C1' | H1' | 114.9° | 109.8° |
| C1' | O4' | C4' | 109.1° | 106.9° |
| C3' | C2' | H2' | 114.1° | 110.6° |
| C2' | C3' | H3' | 109.2° | 110.9° |
| C2' | C3' | O3' | 116.3° | 110.9° |
| C2' | C3' | C4' | 103.4° | 102.1° |
| H3' | C3' | O3' | 102.9° | 110.9° |
| H3' | C3' | C4' | 116.0° | 110.9° |
| O3' | C3' | C4' | 109.6° | 110.9° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C3' | C4' | C5' | 115.6° | 110.6° |
| C3' | C4' | H4' | 107.6° | 110.7° |
| C3' | C4' | O4' | 108.0° | 103.6° |
| C5' | C4' | H4' | 102.0° | 110.7° |
| C5' | C4' | O4' | 112.9° | 110.6° |
| C4' | C5' | H5' | 107.8° | 109.4° |
| C4' | C5' | O5' | 114.6° | 109.5° |
| C4' | C5' | H5'A | 107.8° | 109.4° |
| H4' | C4' | O4' | 110.6° | 110.5° |
| H5' | C5' | O5' | 107.8° | 109.5° |
| H5' | C5' | H5'A | 111.1° | 109.5° |
| O5' | C5' | H5'A | 107.8° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| F | C2' | C1' | N9 | 41.8° | 2.8° |
| F | C2' | C1' | C3' | 117.0° | 118.6° |
| F | C2' | C1' | H2' | 119.6° | 122.6° |
| F | C2' | C1' | O4' | 81.9° | 116.7° |
| F | C2' | C1' | H1' | 155.4° | 123.8° |
| F | C2' | C3' | H2' | 119.6° | 122.6° |
| F | C2' | C3' | H3' | 35.5° | 21.4° |
| F | C2' | C3' | O3' | 151.4° | 102.2° |
| F | C2' | C3' | C4' | 88.5° | 139.6° |
| OP2 | P | OP1 | OP3 | 125.3° | 120.0° |
| OP2 | P | OP1 | O5' | 126.1° | 120.0° |
| OP2 | P | OP3 | O5' | 113.3° | 120.0° |
| OP2 | P | O5' | C5' | 158.7° | 55.0° |
| OP2 | P | OP1 | HOP1 | 0.0° | 180.0° |
| OP2 | P | OP3 | HOP3 | 0.0° | 60.0° |
| OP1 | P | OP3 | O5' | 114.2° | 120.0° |
| OP1 | P | O5' | C5' | 25.7° | 65.0° |
| OP1 | P | OP3 | HOP3 | 132.6° | 59.9° |
| OP3 | P | O5' | C5' | 88.5° | 175.0° |
| OP3 | P | OP1 | HOP1 | 125.3° | 60.1° |
| P | O5' | C5' | C4' | 177.8° | 180.0° |
| P | O5' | C5' | H5' | 57.8° | 60.0° |
| P | O5' | C5' | H5'A | 62.2° | 60.0° |
| O5' | P | OP1 | HOP1 | 126.1° | 60.0° |
| O5' | P | OP3 | HOP3 | 113.2° | 180.0° |
| N1 | C2 | N3 | H2 | 180.0° | 180.0° |
| N1 | C2 | N3 | C4 | 0.5° | 0.0° |
| C2 | N1 | C6 | C5 | 0.4° | 0.0° |
| C2 | N1 | C6 | N6 | 178.0° | 180.0° |
| C6 | N1 | C2 | N3 | 0.7° | 0.0° |
| C6 | N1 | C2 | H2 | 179.3° | 180.0° |
| N1 | C6 | C5 | C4 | 0.1° | 0.0° |
| N1 | C6 | C5 | N7 | 178.0° | 179.9° |
| N1 | C6 | C5 | N6 | 177.3° | 180.0° |
| N1 | C6 | N6 | HN6 | 0.0° | 0.0° |
| N1 | C6 | N6 | HN6A | 120.0° | 179.9° |
| C2 | N3 | C4 | N9 | 176.7° | 179.9° |
| C2 | N3 | C4 | C5 | 0.0° | 0.0° |
| H2 | C2 | N3 | C4 | 179.5° | 180.0° |
| N3 | C4 | N9 | C5 | 177.2° | 179.9° |
| N3 | C4 | C5 | N7 | 178.7° | 179.9° |
| N3 | C4 | C5 | C6 | 0.3° | 0.0° |
| N3 | C4 | N9 | C8 | 178.6° | 180.0° |
| N3 | C4 | N9 | C1' | 2.4° | 0.1° |
| N9 | C4 | C5 | N7 | 1.4° | 0.0° |
| N9 | C4 | C5 | C6 | 177.0° | 179.9° |
| C4 | N9 | C8 | N7 | 0.8° | 0.1° |
| C4 | N9 | C8 | H8 | 179.2° | 179.9° |
| C4 | N9 | C8 | C1' | 175.8° | 179.9° |
| C4 | N9 | C1' | C2' | 141.2° | 85.2° |
| C4 | N9 | C1' | O4' | 97.4° | 156.8° |
| C4 | N9 | C1' | H1' | 25.0° | 35.8° |
| C4 | C5 | N7 | C6 | 178.0° | 179.9° |
| C4 | C5 | C6 | N6 | 177.3° | 180.0° |
| C4 | C5 | N7 | C8 | 0.9° | 0.1° |
| C5 | C4 | N9 | C8 | 1.3° | 0.0° |
| C5 | C4 | N9 | C1' | 174.8° | 179.9° |
| N7 | C5 | C6 | N6 | 0.7° | 0.1° |
| C5 | N7 | C8 | H8 | 179.9° | 179.9° |
| C5 | N7 | C8 | N9 | 0.1° | 0.1° |
| C5 | C6 | N6 | HN6 | 177.5° | 180.0° |
| C5 | C6 | N6 | HN6A | 62.5° | 0.1° |
| C6 | C5 | N7 | C8 | 177.1° | 179.9° |
| C6 | N6 | HN6 | HN6A | 120.0° | 179.9° |
| N7 | C8 | H8 | N9 | 180.0° | 180.0° |
| N7 | C8 | N9 | C1' | 175.0° | 180.0° |
| H8 | C8 | N9 | C1' | 5.0° | 0.0° |
| C8 | N9 | C1' | C2' | 33.9° | 94.7° |
| C8 | N9 | C1' | O4' | 87.6° | 23.4° |
| C8 | N9 | C1' | H1' | 150.0° | 144.3° |
| N9 | C1' | C2' | O4' | 123.7° | 119.5° |
| N9 | C1' | C2' | H1' | 113.5° | 121.0° |
| N9 | C1' | O4' | H1' | 114.2° | 120.9° |
| N9 | C1' | C2' | C3' | 158.8° | 121.5° |
| N9 | C1' | C2' | H2' | 77.7° | 119.8° |
| N9 | C1' | O4' | C4' | 156.6° | 145.9° |
| C2' | C1' | O4' | H1' | 117.2° | 119.5° |
| C1' | C2' | C3' | H2' | 123.5° | 118.7° |
| C1' | C2' | C3' | H3' | 152.4° | 97.3° |
| C1' | C2' | C3' | O3' | 91.7° | 139.1° |
| C1' | C2' | C3' | C4' | 28.4° | 20.9° |
| C2' | C1' | O4' | C4' | 28.1° | 26.3° |
| O4' | C1' | C2' | C3' | 35.1° | 1.9° |
| O4' | C1' | C2' | H2' | 158.5° | 120.7° |
| C1' | O4' | C4' | C3' | 9.1° | 39.9° |
| C1' | O4' | C4' | C5' | 138.2° | 158.4° |
| C1' | O4' | C4' | H4' | 108.3° | 78.7° |
| H1' | C1' | C2' | C3' | 87.7° | 117.6° |
| H1' | C1' | C2' | H2' | 35.8° | 1.2° |
| H1' | C1' | O4' | C4' | 89.2° | 93.2° |
| C2' | C3' | H3' | O3' | 124.2° | 123.6° |
| C2' | C3' | H3' | C4' | 116.2° | 112.7° |
| C2' | C3' | O3' | C4' | 116.7° | 112.7° |
| C2' | C3' | O3' | HO3' | 180.0° | 61.5° |
| C2' | C3' | C4' | C5' | 114.2° | 155.5° |
| C2' | C3' | C4' | H4' | 132.6° | 81.5° |
| C2' | C3' | C4' | O4' | 13.2° | 36.9° |
| H2' | C2' | C3' | H3' | 84.1° | 144.0° |
| H2' | C2' | C3' | O3' | 31.8° | 20.3° |
| H2' | C2' | C3' | C4' | 151.9° | 97.8° |
| H3' | C3' | O3' | C4' | 124.0° | 123.7° |
| H3' | C3' | O3' | HO3' | 60.6° | 62.1° |
| H3' | C3' | C4' | C5' | 5.2° | 37.3° |
| H3' | C3' | C4' | H4' | 108.0° | 160.4° |
| H3' | C3' | C4' | O4' | 132.7° | 81.2° |
| O3' | C3' | C4' | C5' | 121.1° | 86.3° |
| O3' | C3' | C4' | H4' | 8.0° | 36.7° |
| O3' | C3' | C4' | O4' | 111.4° | 155.1° |
| C4' | C3' | O3' | HO3' | 63.3° | 174.2° |
| C3' | C4' | C5' | H4' | 116.4° | 123.0° |
| C3' | C4' | C5' | O4' | 125.0° | 114.2° |
| C3' | C4' | H4' | O4' | 117.7° | 114.1° |
| C3' | C4' | C5' | H5' | 156.7° | 55.0° |
| C3' | C4' | C5' | O5' | 36.7° | 175.0° |
| C3' | C4' | C5' | H5'A | 83.3° | 65.0° |
| C5' | C4' | H4' | O4' | 120.3° | 122.8° |
| C4' | C5' | H5' | O5' | 124.2° | 120.0° |
| C4' | C5' | H5' | H5'A | 117.9° | 119.9° |
| C4' | C5' | O5' | H5'A | 120.0° | 120.0° |
| H4' | C4' | C5' | H5' | 86.9° | 68.1° |
| H4' | C4' | C5' | O5' | 153.0° | 51.9° |
| H4' | C4' | C5' | H5'A | 33.1° | 172.0° |
| O4' | C4' | C5' | H5' | 31.7° | 169.2° |
| O4' | C4' | C5' | O5' | 88.3° | 70.8° |
| O4' | C4' | C5' | H5'A | 151.7° | 49.2° |
| H5' | C5' | O5' | H5'A | 120.0° | 120.1° |
