A5J

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1G	PG	doub	1.48Å	1.48Å
O2G	PG	sing	1.61Å	1.50Å
PG	O3G	sing	1.61Å	1.51Å
PG	O3B	sing	1.61Å	1.58Å
O2B	PB	doub	1.48Å	1.49Å
O1A	PA	doub	1.48Å	1.50Å
O3B	PB	sing	1.61Å	1.57Å
PB	O1B	sing	1.61Å	1.51Å
PB	O3A	sing	1.61Å	1.55Å
PA	O3A	sing	1.61Å	1.57Å
PA	O2A	sing	1.61Å	1.50Å
PA	O5'	sing	1.61Å	1.58Å
C5'	O5'	sing	1.43Å	1.40Å
C5'	C4'	sing	1.53Å	1.51Å
O3'	C3'	sing	1.43Å	1.42Å
C4'	C3'	sing	1.54Å	1.49Å
C4'	O4'	sing	1.44Å	1.39Å
C3'	C2'	sing	1.55Å	1.52Å
O4'	C1'	sing	1.44Å	1.39Å
C2'	C1'	sing	1.55Å	1.52Å
C1'	C1	sing	1.51Å	1.49Å
ON2	N	sing	1.46Å	1.19Å
C6	C1	doub	1.39Å	1.33Å	Aromatic
C6	C5	sing	1.39Å	1.43Å	Aromatic
C1	C2	sing	1.39Å	1.45Å	Aromatic
N	C5	sing	1.40Å	1.41Å
N	ON1	sing	1.46Å	1.21Å
C5	C4	doub	1.40Å	1.39Å	Aromatic
C2	O2	sing	1.36Å	1.19Å
C2	N3	doub	1.32Å	1.40Å	Aromatic
C4	N3	sing	1.32Å	1.35Å	Aromatic
C4	N4	sing	1.39Å	1.34Å
O2	H21	sing	0.97Å	0.95Å
N4	H41	sing	0.97Å	1.00Å
N4	H42	sing	0.97Å	1.00Å
C6	H61	sing	1.08Å	1.08Å
C1'	H1'1	sing	1.09Å	1.10Å
C2'	H2'1	sing	1.09Å	1.10Å
C2'	H2'2	sing	1.09Å	1.10Å
C3'	H3'1	sing	1.09Å	1.10Å
O3'	H3'2	sing	0.97Å	0.95Å
C4'	H4'1	sing	1.09Å	1.10Å
C5'	H5'1	sing	1.09Å	1.10Å
C5'	H5'2	sing	1.09Å	1.10Å
ON1	HN11	sing	0.97Å	0.95Å
ON2	HN21	sing	0.97Å	0.95Å
O1B	H1	sing	0.97Å	0.95Å
O2A	H2	sing	0.97Å	0.95Å
O2G	H3	sing	0.97Å	0.95Å
O3G	H4	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1G	PG	O2G	110.2°	109.5°
O1G	PG	O3G	107.6°	109.5°
O1G	PG	O3B	105.8°	109.5°
O2G	PG	O3G	100.7°	109.4°
O2G	PG	O3B	116.3°	109.5°
PG	O2G	H3	109.5°	114.0°
O3G	PG	O3B	116.0°	109.5°
PG	O3G	H4	109.5°	114.1°
PG	O3B	PB	126.1°	134.0°
O2B	PB	O3B	118.4°	109.4°
O2B	PB	O1B	100.8°	109.5°
O2B	PB	O3A	113.4°	109.5°
O1A	PA	O3A	112.5°	109.4°
O1A	PA	O2A	103.8°	109.4°
O1A	PA	O5'	113.8°	109.5°
O3B	PB	O1B	106.7°	109.5°
O3B	PB	O3A	105.2°	109.5°
O1B	PB	O3A	112.3°	109.5°
PB	O1B	H1	109.5°	113.9°
PB	O3A	PA	126.2°	134.0°
O3A	PA	O2A	110.4°	109.5°
O3A	PA	O5'	103.9°	109.5°
O2A	PA	O5'	112.7°	109.5°
PA	O2A	H2	109.5°	114.0°
PA	O5'	C5'	119.1°	123.0°
O5'	C5'	C4'	109.9°	109.5°
O5'	C5'	H5'1	109.4°	109.4°
O5'	C5'	H5'2	109.3°	109.5°
C5'	C4'	C3'	111.7°	109.9°
C5'	C4'	O4'	111.7°	109.9°
C5'	C4'	H4'1	109.1°	110.0°
C4'	C5'	H5'1	109.4°	109.5°
C4'	C5'	H5'2	109.4°	109.5°
O3'	C3'	C4'	115.0°	110.7°
O3'	C3'	C2'	115.4°	110.5°
O3'	C3'	H3'1	109.0°	110.4°
C3'	O3'	H3'2	109.5°	114.0°
C3'	C4'	O4'	104.0°	107.4°
C4'	C3'	C2'	101.2°	104.2°
C4'	C3'	H3'1	108.0°	110.5°
C3'	C4'	H4'1	109.4°	109.9°
C4'	O4'	C1'	111.4°	106.9°
O4'	C4'	H4'1	110.8°	109.8°
C3'	C2'	C1'	100.4°	102.1°
C3'	C2'	H2'1	111.7°	110.9°
C3'	C2'	H2'2	111.7°	110.9°
C2'	C3'	H3'1	107.7°	110.4°
O4'	C1'	C2'	106.0°	103.7°
O4'	C1'	C1	111.6°	110.6°
O4'	C1'	H1'1	110.8°	110.6°
C2'	C1'	C1	110.0°	110.6°
C2'	C1'	H1'1	108.9°	110.6°
C1'	C2'	H2'1	111.7°	111.0°
C1'	C2'	H2'2	111.7°	110.9°
C1'	C1	C6	129.4°	120.3°
C1'	C1	C2	110.9°	120.4°
C1	C1'	H1'1	109.4°	110.5°
ON2	N	C5	117.4°	111.0°
ON2	N	ON1	123.4°	111.0°
N	ON2	HN21	109.5°	114.0°
C1	C6	C5	122.5°	118.5°
C6	C1	C2	119.7°	119.3°
C1	C6	H61	118.8°	120.7°
C6	C5	N	118.3°	120.4°
C6	C5	C4	119.5°	119.1°
C5	C6	H61	118.7°	120.8°
C1	C2	O2	127.5°	119.5°
C1	C2	N3	114.6°	120.9°
C5	N	ON1	119.2°	111.0°
N	C5	C4	122.2°	120.4°
N	ON1	HN11	109.5°	114.0°
C5	C4	N3	116.9°	120.6°
C5	C4	N4	126.7°	119.7°
O2	C2	N3	117.9°	119.6°
C2	O2	H21	109.5°	114.1°
C2	N3	C4	126.8°	121.6°
N3	C4	N4	116.4°	119.7°
C4	N4	H41	109.5°	120.0°
C4	N4	H42	109.5°	120.0°
H41	N4	H42	109.5°	120.1°
H2'1	C2'	H2'2	109.5°	110.8°
H5'1	C5'	H5'2	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1G	PG	O2G	O3G	113.4°	120.0°
O1G	PG	O2G	O3B	120.4°	120.0°
O1G	PG	O3G	O3B	118.2°	120.0°
O1G	PG	O3B	PB	123.0°	40.0°
O1G	PG	O2G	H3	0.0°	180.0°
O1G	PG	O3G	H4	0.0°	59.9°
O2G	PG	O3G	O3B	126.4°	120.0°
O2G	PG	O3B	PB	0.3°	80.0°
O2G	PG	O3G	H4	115.3°	60.0°
O3G	PG	O3B	PB	117.8°	160.0°
O3G	PG	O2G	H3	113.4°	60.0°
PG	O3B	PB	O2B	45.1°	45.0°
PG	O3B	PB	O1B	157.7°	75.0°
PG	O3B	PB	O3A	82.8°	165.0°
O3B	PG	O2G	H3	120.4°	60.0°
O3B	PG	O3G	H4	118.3°	180.0°
O2B	PB	O3B	O1B	112.6°	120.0°
O2B	PB	O3B	O3A	128.0°	120.0°
O2B	PB	O1B	O3A	121.0°	120.0°
O2B	PB	O3A	PA	14.9°	40.0°
O2B	PB	O1B	H1	0.0°	180.0°
O1A	PA	O3A	PB	24.4°	40.0°
O1A	PA	O3A	O2A	115.4°	120.0°
O1A	PA	O3A	O5'	123.5°	120.0°
O1A	PA	O2A	O5'	123.6°	120.0°
O1A	PA	O5'	C5'	32.3°	54.9°
O1A	PA	O2A	H2	0.0°	180.0°
O3B	PB	O1B	O3A	114.8°	120.0°
O3B	PB	O3A	PA	116.0°	160.0°
O3B	PB	O1B	H1	124.2°	60.0°
O1B	PB	O3A	PA	128.3°	80.0°
PB	O3A	PA	O2A	139.9°	79.9°
PB	O3A	PA	O5'	99.1°	160.0°
O3A	PB	O1B	H1	121.0°	60.0°
O3A	PA	O2A	O5'	115.7°	120.0°
O3A	PA	O5'	C5'	90.4°	174.9°
O3A	PA	O2A	H2	120.7°	60.0°
O2A	PA	O5'	C5'	150.1°	65.0°
PA	O5'	C5'	C4'	142.2°	180.0°
PA	O5'	C5'	H5'1	22.1°	60.1°
PA	O5'	C5'	H5'2	97.8°	59.9°
O5'	PA	O2A	H2	123.6°	60.0°
O5'	C5'	C4'	H5'1	120.1°	120.0°
O5'	C5'	C4'	H5'2	120.0°	120.0°
O5'	C5'	C4'	C3'	57.3°	174.9°
O5'	C5'	C4'	O4'	58.8°	67.1°
O5'	C5'	C4'	H4'1	178.3°	53.9°
O5'	C5'	H5'1	H5'2	119.8°	120.0°
C5'	C4'	C3'	O3'	75.4°	119.8°
C5'	C4'	C3'	O4'	120.6°	119.5°
C5'	C4'	C3'	H4'1	120.9°	121.1°
C5'	C4'	O4'	H4'1	121.9°	121.1°
C5'	C4'	C3'	C2'	159.5°	121.4°
C5'	C4'	O4'	C1'	144.1°	145.8°
C5'	C4'	C3'	H3'1	46.5°	2.8°
C4'	C5'	H5'1	H5'2	119.8°	120.0°
O3'	C3'	C4'	C2'	125.1°	118.7°
O3'	C3'	C4'	H3'1	121.9°	122.7°
O3'	C3'	C4'	O4'	164.0°	120.6°
O3'	C3'	C2'	H3'1	122.0°	122.5°
O3'	C3'	C2'	C1'	163.4°	98.0°
O3'	C3'	C2'	H2'1	78.1°	20.3°
O3'	C3'	C2'	H2'2	44.9°	143.8°
O3'	C3'	C4'	H4'1	45.5°	1.3°
C3'	C4'	O4'	H4'1	117.4°	119.4°
C4'	C3'	C2'	H3'1	113.2°	118.7°
C3'	C4'	O4'	C1'	23.5°	26.3°
C4'	C3'	C2'	C1'	38.6°	20.9°
C4'	C3'	C2'	H2'1	157.1°	139.1°
C4'	C3'	C2'	H2'2	79.9°	97.3°
C4'	C3'	O3'	H3'2	180.0°	176.3°
C3'	C4'	C5'	H5'1	62.8°	55.0°
C3'	C4'	C5'	H5'2	177.3°	65.0°
O4'	C4'	C3'	C2'	38.8°	1.9°
C4'	O4'	C1'	C2'	2.1°	39.9°
C4'	O4'	C1'	C1	117.7°	158.5°
C4'	O4'	C1'	H1'1	120.1°	78.7°
O4'	C4'	C3'	H3'1	74.1°	116.7°
O4'	C4'	C5'	H5'1	178.8°	173.0°
O4'	C4'	C5'	H5'2	61.3°	52.9°
C3'	C2'	C1'	O4'	25.9°	37.0°
C3'	C2'	C1'	H2'1	118.5°	118.2°
C3'	C2'	C1'	H2'2	118.5°	118.2°
C3'	C2'	C1'	C1	94.9°	155.6°
C3'	C2'	C1'	H1'1	145.2°	81.6°
C3'	C2'	H2'1	H2'2	124.2°	123.6°
C2'	C3'	O3'	H3'2	62.7°	61.4°
C2'	C3'	C4'	H4'1	79.6°	117.4°
O4'	C1'	C2'	C1	120.8°	118.6°
O4'	C1'	C2'	H1'1	119.3°	118.6°
O4'	C1'	C1	H1'1	123.0°	122.9°
O4'	C1'	C1	C6	22.9°	21.2°
O4'	C1'	C1	C2	158.0°	158.6°
O4'	C1'	C2'	H2'1	144.4°	155.2°
O4'	C1'	C2'	H2'2	92.6°	81.3°
C1'	O4'	C4'	H4'1	93.9°	93.1°
C2'	C1'	C1	H1'1	119.6°	122.9°
C2'	C1'	C1	C6	94.4°	93.1°
C2'	C1'	C1	C2	84.7°	87.1°
C1'	C2'	H2'1	H2'2	124.3°	123.7°
C1'	C2'	C3'	H3'1	74.6°	139.6°
C1'	C1	C6	C2	179.0°	179.8°
C1'	C1	C6	C5	179.4°	179.8°
C1'	C1	C2	O2	0.6°	0.2°
C1'	C1	C2	N3	179.6°	179.7°
C1'	C1	C6	H61	0.5°	0.2°
C1	C1'	C2'	H2'1	23.6°	86.3°
C1	C1'	C2'	H2'2	146.6°	37.3°
ON2	N	C5	C6	5.1°	34.0°
ON2	N	C5	ON1	180.0°	124.0°
ON2	N	C5	C4	174.9°	146.1°
ON2	N	ON1	HN11	180.0°	56.1°
C1	C6	C5	H61	180.0°	180.0°
C1	C6	C5	N	179.8°	180.0°
C1	C6	C5	C4	0.2°	0.0°
C6	C1	C2	O2	179.8°	180.0°
C6	C1	C2	N3	0.4°	0.1°
C6	C1	C1'	H1'1	146.0°	144.0°
C5	C6	C1	C2	0.4°	0.0°
C6	C5	N	C4	180.0°	179.9°
C6	C5	N	ON1	175.0°	90.0°
C6	C5	C4	N3	0.1°	0.0°
C6	C5	C4	N4	179.9°	179.9°
C1	C2	O2	N3	179.8°	179.9°
C1	C2	N3	C4	0.2°	0.1°
C1	C2	O2	H21	179.8°	90.0°
C2	C1	C6	H61	179.6°	180.0°
C2	C1	C1'	H1'1	34.9°	35.7°
N	C5	C4	N3	180.0°	180.0°
N	C5	C4	N4	0.1°	0.0°
N	C5	C6	H61	0.3°	0.0°
C5	N	ON1	HN11	0.0°	179.9°
C5	N	ON2	HN21	180.0°	179.9°
ON1	N	C5	C4	5.0°	90.0°
ON1	N	ON2	HN21	0.1°	56.1°
C5	C4	N3	C2	0.1°	0.1°
C5	C4	N3	N4	180.0°	180.0°
C5	C4	N4	H41	179.9°	180.0°
C5	C4	N4	H42	60.0°	0.0°
C4	C5	C6	H61	179.7°	180.0°
O2	C2	N3	C4	180.0°	180.0°
C2	N3	C4	N4	179.9°	180.0°
N3	C2	O2	H21	0.0°	89.9°
N3	C4	N4	H41	0.0°	0.0°
N3	C4	N4	H42	120.0°	180.0°
C4	N4	H41	H42	120.0°	180.0°
H1'1	C1'	C2'	H2'1	96.3°	36.6°
H1'1	C1'	C2'	H2'2	26.7°	160.2°
H2'1	C2'	C3'	H3'1	43.9°	102.2°
H2'2	C2'	C3'	H3'1	166.9°	21.3°
H3'1	C3'	O3'	H3'2	58.6°	61.0°
H3'1	C3'	C4'	H4'1	167.4°	124.0°
H4'1	C4'	C5'	H5'1	58.2°	66.1°
H4'1	C4'	C5'	H5'2	61.6°	173.9°

Release date:	2018-07-18
Definition date:	2017-07-10
Last modified:	2018-07-13
Release status:	REL
Processing site:	RCSB
Derived from:	5W6K