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A4P

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N9RC8Rsing1.36Å1.43ÅAromatic
N9RC1Rsing1.46Å1.49Å
N9RC4Rsing1.37Å1.38ÅAromatic
C8RN7Rdoub1.30Å1.31ÅAromatic
C8RH8Rsing1.08Å1.10Å
N7RC5Rsing1.35Å1.42ÅAromatic
C5RC6Rsing1.41Å1.43ÅAromatic
C5RC4Rdoub1.40Å1.39ÅAromatic
C6RN6Rsing1.38Å1.26Å
C6RN1Rdoub1.33Å1.47ÅAromatic
N6RH6R1sing0.97Å1.02Å
N6RH6R2sing0.97Å1.02Å
N1RC2Rsing1.32Å1.33ÅAromatic
C1RO4'sing1.44Å1.40Å
C1RC2'sing1.55Å1.52Å
C1RH1Rsing1.09Å1.11Å
C2RN3Rdoub1.32Å1.40ÅAromatic
C2RH2Rsing1.08Å1.10Å
N3RC4Rsing1.33Å1.42ÅAromatic
O5'C5'sing1.43Å1.50Å
O5'PAsing1.61Å1.60Å
C5'C4'sing1.53Å1.49Å
C5'H5'1sing1.09Å1.11Å
C5'H5'2sing1.09Å1.11Å
C4'O4'sing1.44Å1.45Å
C4'C3'sing1.54Å1.48Å
C4'H4'sing1.09Å1.11Å
C3'O3'sing1.43Å1.40Å
C3'C2'sing1.55Å1.52Å
C3'H3'sing1.09Å1.12Å
O3'HO'3sing0.97Å0.95Å
C2'O2'sing1.43Å1.45Å
C2'H2'sing1.09Å1.12Å
O2'HO'2sing0.97Å0.95Å
PAO1Asing1.61Å1.49Å
PAO2Adoub1.48Å1.51Å
PAO3Asing1.61Å1.54Å
O1AHOA1sing0.97Å0.95Å
O3APBsing1.61Å1.65Å
PBO1Bsing1.61Å1.51Å
PBO2Bdoub1.48Å1.50Å
PBO3Bsing1.61Å1.64Å
O1BHOB1sing0.97Å0.95Å
O3BPGsing1.61Å1.48Å
PGO1Gsing1.61Å1.53Å
PGO2Gdoub1.48Å1.50Å
PGO3Gsing1.61Å1.58Å
O1GHOG1sing0.97Å0.95Å
O3GPDsing1.61Å1.61Å
PDO1Dsing1.61Å1.51Å
PDO2Ddoub1.48Å1.51Å
PDO3Dsing1.61Å1.50Å
O1DHOD1sing0.97Å0.95Å
O3DC6Asing1.43Å1.39Å
N1C2doub1.32Å1.32Å
N1C9sing1.33Å1.36Å
C2N2sing1.37Å1.31Å
C2N3sing1.36Å1.41Å
N2HN21sing0.97Å1.02Å
N2HN22sing0.97Å1.02Å
N3C4sing1.35Å1.38Å
N3HN3sing0.97Å1.02Å
C4O4doub1.22Å1.28Å
C4C10sing1.41Å1.45Å
N5C6doub1.29Å1.38Å
N5C10sing1.36Å1.41Å
C6C6Asing1.51Å1.48Å
C6C7sing1.51Å1.52Å
C6AH6A1sing1.09Å1.11Å
C6AH6A2sing1.09Å1.12Å
C7N8sing1.47Å1.35Å
C7H71sing1.09Å1.12Å
C7H72sing1.09Å1.11Å
N8C9sing1.38Å1.36Å
N8HN8sing0.97Å1.02Å
C9C10doub1.40Å1.48Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C8RN9RC1R118.2°126.4°
C8RN9RC4R104.8°107.4°
N9RC8RN7R115.4°110.0°
N9RC8RH8R126.2°125.0°
C1RN9RC4R136.8°126.2°
N9RC1RO4'109.2°110.6°
N9RC1RC2'116.5°110.7°
N9RC1RH1R104.1°110.6°
N9RC4RC5R105.3°106.0°
N9RC4RN3R130.7°134.9°
N7RC8RH8R118.4°125.0°
C8RN7RC5R101.5°109.4°
N7RC5RC6R126.2°134.7°
N7RC5RC4R113.0°107.2°
C6RC5RC4R120.8°118.2°
C5RC6RN6R128.8°120.8°
C5RC6RN1R115.7°118.4°
C5RC4RN3R124.0°119.1°
N6RC6RN1R115.6°120.8°
C6RN6RH6R1128.7°120.0°
C6RN6RH6R2105.5°120.0°
C6RN1RC2R118.4°121.2°
H6R1N6RH6R2105.5°120.0°
N1RC2RN3R129.2°122.5°
N1RC2RH2R112.3°118.8°
O4'C1RC2'107.5°103.5°
O4'C1RH1R113.8°110.6°
C1RO4'C4'106.7°106.9°
C2'C1RH1R105.9°110.6°
C1RC2'C3'102.9°102.1°
C1RC2'O2'110.4°110.9°
C1RC2'H2'113.7°111.0°
N3RC2RH2R118.4°118.7°
C2RN3RC4R112.0°120.6°
C5'O5'PA119.8°106.7°
O5'C5'C4'106.6°109.4°
O5'C5'H5'1113.3°109.5°
O5'C5'H5'2113.3°109.5°
O5'PAO1A103.7°109.4°
O5'PAO2A113.6°109.5°
O5'PAO3A103.9°109.4°
C4'C5'H5'1113.3°109.4°
C4'C5'H5'2113.3°109.5°
C5'C4'O4'109.3°109.9°
C5'C4'C3'117.0°109.9°
C5'C4'H4'102.6°109.8°
H5'1C5'H5'297.2°109.5°
O4'C4'C3'103.1°107.5°
O4'C4'H4'116.6°109.9°
C3'C4'H4'108.8°109.9°
C4'C3'O3'112.8°110.8°
C4'C3'C2'103.6°104.0°
C4'C3'H3'112.7°110.5°
O3'C3'C2'113.5°110.5°
O3'C3'H3'102.7°110.4°
C3'O3'HO'3112.7°106.8°
C2'C3'H3'112.0°110.5°
C3'C2'O2'111.2°110.9°
C3'C2'H2'112.9°111.0°
O2'C2'H2'105.8°110.8°
C2'O2'HO'2110.4°106.9°
O1APAO2A113.6°109.5°
O1APAO3A115.1°109.5°
PAO1AHOA1103.8°106.8°
O2APAO3A106.6°109.5°
PAO3APB120.7°106.8°
O3APBO1B111.6°109.5°
O3APBO2B111.1°109.4°
O3APBO3B101.5°109.5°
O1BPBO2B119.0°109.5°
O1BPBO3B103.3°109.5°
PBO1BHOB1111.5°106.8°
O2BPBO3B108.6°109.5°
PBO3BPG124.1°106.8°
O3BPGO1G110.8°109.4°
O3BPGO2G106.6°109.5°
O3BPGO3G106.9°109.5°
O1GPGO2G114.2°109.5°
O1GPGO3G106.5°109.5°
PGO1GHOG1110.8°106.9°
O2GPGO3G111.7°109.5°
PGO3GPD123.8°106.8°
O3GPDO1D103.1°109.4°
O3GPDO2D104.1°109.5°
O3GPDO3D114.5°109.5°
O1DPDO2D107.1°109.5°
O1DPDO3D116.8°109.5°
PDO1DHOD1103.1°106.8°
O2DPDO3D110.2°109.5°
PDO3DC6A117.4°106.8°
O3DC6AC6107.5°109.5°
O3DC6AH6A1112.9°109.5°
O3DC6AH6A2112.9°109.5°
C2N1C9122.6°120.9°
N1C2N2123.7°119.1°
N1C2N3117.2°121.8°
N1C9N8123.2°121.8°
N1C9C10121.8°120.1°
N2C2N3119.0°119.1°
C2N2HN21123.7°120.0°
C2N2HN22107.2°120.0°
C2N3C4126.7°120.5°
C2N3HN3117.9°119.8°
HN21N2HN22107.2°120.0°
C4N3HN3115.4°119.7°
N3C4O4117.5°120.9°
N3C4C10115.5°118.3°
O4C4C10127.0°120.8°
C4C10N5122.9°121.4°
C4C10C9116.2°118.4°
C6N5C10118.4°121.7°
N5C6C6A120.7°119.2°
N5C6C7122.9°121.5°
N5C10C9120.9°120.1°
C6AC6C7116.4°119.3°
C6C6AH6A1113.0°109.5°
C6C6AH6A2113.0°109.5°
C6C7N8112.3°109.1°
C6C7H71111.1°109.5°
C6C7H72111.1°109.5°
H6A1C6AH6A297.6°109.5°
N8C7H71111.2°109.5°
N8C7H72111.2°109.6°
C7N8C9130.4°117.4°
C7N8HN8104.9°121.3°
H71C7H7299.2°109.6°
C9N8HN8104.9°121.3°
N8C9C10115.0°118.2°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C8RN9RC1RC4R173.2°179.7°
N9RC8RN7RH8R180.0°180.0°
N9RC8RN7RC5R0.0°0.0°
C8RN9RC4RC5R0.1°0.4°
C8RN9RC1RO4'97.9°28.5°
C8RN9RC1RC2'140.1°85.6°
C8RN9RC1RH1R23.9°151.4°
C8RN9RC4RN3R180.0°179.5°
C1RN9RC8RN7R175.1°180.0°
C1RN9RC8RH8R4.9°0.0°
C1RN9RC4RC5R173.7°179.8°
N9RC1RO4'C2'127.3°118.6°
N9RC1RO4'H1R115.8°122.9°
N9RC1RC2'H1R115.2°123.0°
C1RN9RC4RN3R6.2°0.8°
N9RC1RO4'C4'152.5°158.7°
N9RC1RC2'C3'123.9°155.6°
N9RC1RC2'O2'117.4°86.2°
N9RC1RC2'H2'1.4°37.3°
C4RN9RC8RN7R0.1°0.3°
C4RN9RC8RH8R179.9°179.7°
N9RC4RC5RN7R0.0°0.5°
N9RC4RC5RC6R180.0°179.8°
N9RC4RC5RN3R179.9°179.2°
C4RN9RC1RO4'88.9°151.8°
C4RN9RC1RC2'33.1°94.1°
C4RN9RC1RH1R149.3°28.9°
N9RC4RN3RC2R180.0°179.5°
C8RN7RC5RC6R180.0°179.9°
C8RN7RC5RC4R0.0°0.3°
H8RC8RN7RC5R179.9°180.0°
N7RC5RC6RC4R180.0°179.6°
N7RC5RC6RN6R0.0°0.0°
N7RC5RC6RN1R180.0°179.9°
N7RC5RC4RN3R180.0°179.7°
C5RC6RN6RN1R179.9°180.0°
C5RC6RN6RH6R1180.0°180.0°
C5RC6RN6RH6R254.8°0.0°
C5RC6RN1RC2R0.1°0.0°
C6RC5RC4RN3R0.0°0.6°
C4RC5RC6RN6R180.0°179.6°
C4RC5RC6RN1R0.1°0.3°
C5RC4RN3RC2R0.0°0.6°
C6RN6RH6R1H6R2125.3°180.0°
N6RC6RN1RC2R180.0°179.9°
N1RC6RN6RH6R10.0°0.0°
N1RC6RN6RH6R2125.3°180.0°
C6RN1RC2RN3R0.0°0.0°
C6RN1RC2RH2R180.0°180.0°
N1RC2RN3RH2R179.9°180.0°
N1RC2RN3RC4R0.0°0.3°
O4'C1RC2'H1R122.0°118.5°
C1RO4'C4'C5'165.1°145.9°
C1RO4'C4'C3'40.0°26.4°
C1RO4'C4'H4'79.1°93.1°
O4'C1RC2'C3'1.0°37.1°
O4'C1RC2'O2'119.8°155.3°
O4'C1RC2'H2'121.5°81.2°
C2'C1RO4'C4'25.3°40.1°
C1RC2'C3'C4'22.7°21.0°
C1RC2'C3'O3'145.3°97.9°
C1RC2'C3'O2'118.2°118.2°
C1RC2'C3'H2'123.0°118.3°
C1RC2'C3'H3'99.1°139.6°
C1RC2'O2'H2'123.5°123.7°
C1RC2'O2'HO'2180.0°179.9°
H1RC1RO4'C4'91.7°78.4°
H1RC1RC2'C3'120.9°81.4°
H1RC1RC2'O2'2.2°36.8°
H1RC1RC2'H2'116.6°160.3°
H2RC2RN3RC4R180.0°179.7°
O5'C5'C4'H5'1125.3°120.0°
O5'C5'C4'H5'2125.3°120.0°
O5'C5'H5'1H5'2119.2°120.0°
O5'C5'C4'O4'59.8°61.7°
O5'C5'C4'C3'56.8°179.7°
O5'C5'C4'H4'175.9°59.3°
C5'O5'PAO1A168.0°60.1°
C5'O5'PAO2A68.1°60.0°
C5'O5'PAO3A47.3°180.0°
PAO5'C5'C4'172.6°180.0°
PAO5'C5'H5'147.3°60.0°
PAO5'C5'H5'262.2°60.0°
O5'PAO1AO2A123.8°120.0°
O5'PAO1AO3A112.9°119.9°
O5'PAO2AO3A113.9°120.0°
O5'PAO1AHOA1180.0°60.0°
O5'PAO3APB87.3°180.0°
C4'C5'H5'1H5'2119.2°120.0°
C5'C4'O4'C3'125.1°119.5°
C5'C4'O4'H4'115.7°121.0°
C5'C4'C3'H4'115.7°120.9°
C5'C4'C3'O3'79.0°119.8°
C5'C4'C3'C2'157.9°121.4°
C5'C4'C3'H3'36.7°2.8°
H5'1C5'C4'O4'175.0°58.3°
H5'1C5'C4'C3'68.5°59.7°
H5'1C5'C4'H4'50.6°179.3°
H5'2C5'C4'O4'65.5°178.3°
H5'2C5'C4'C3'177.9°60.3°
H5'2C5'C4'H4'58.9°60.7°
O4'C4'C3'H4'124.4°119.5°
O4'C4'C3'O3'161.1°120.6°
O4'C4'C3'C2'38.0°1.9°
O4'C4'C3'H3'83.2°116.7°
C4'C3'O3'C2'117.4°114.7°
C4'C3'O3'H3'121.6°122.7°
C4'C3'C2'H3'121.7°118.6°
C4'C3'O3'HO'3180.0°176.2°
C4'C3'C2'O2'95.5°139.2°
C4'C3'C2'H2'145.7°97.3°
H4'C4'C3'O3'36.7°1.1°
H4'C4'C3'C2'86.4°117.6°
H4'C4'C3'H3'152.4°123.8°
O3'C3'C2'H3'115.7°122.5°
O3'C3'C2'O2'27.1°20.3°
O3'C3'C2'H2'91.7°143.8°
C2'C3'O3'HO'362.6°61.5°
C3'C2'O2'H2'122.9°123.6°
C3'C2'O2'HO'266.4°67.2°
H3'C3'O3'HO'358.4°61.1°
H3'C3'C2'O2'142.7°102.2°
H3'C3'C2'H2'24.0°21.3°
H2'C2'O2'HO'256.5°56.4°
O1APAO2AO3A127.8°120.0°
O1APAO3APB25.4°60.1°
O2APAO1AHOA156.2°180.0°
O2APAO3APB152.4°60.0°
O3APAO1AHOA167.1°60.0°
PAO3APBO1B138.9°60.0°
PAO3APBO2B3.7°60.0°
PAO3APBO3B111.6°180.0°
O3APBO1BO2B131.3°120.0°
O3APBO1BO3B108.3°120.0°
O3APBO2BO3B110.8°120.0°
O3APBO1BHOB1179.9°60.0°
O3APBO3BPG99.2°180.0°
O1BPBO2BO3B117.6°120.0°
O1BPBO3BPG145.1°60.1°
O2BPBO1BHOB148.6°179.9°
O2BPBO3BPG17.9°60.0°
O3BPBO1BHOB171.7°60.0°
PBO3BPGO1G32.9°60.1°
PBO3BPGO2G157.7°59.9°
PBO3BPGO3G82.7°180.0°
O3BPGO1GO2G120.4°120.0°
O3BPGO1GO3G115.9°120.0°
O3BPGO2GO3G116.4°120.1°
O3BPGO1GHOG1179.9°60.0°
O3BPGO3GPD112.9°180.0°
O1GPGO2GO3G120.9°120.0°
O1GPGO3GPD5.6°60.1°
O2GPGO1GHOG159.7°180.0°
O2GPGO3GPD130.9°59.9°
O3GPGO1GHOG164.1°60.0°
PGO3GPDO1D152.2°60.0°
PGO3GPDO2D40.5°60.0°
PGO3GPDO3D79.9°180.0°
O3GPDO1DO2D109.5°120.0°
O3GPDO1DO3D126.5°120.0°
O3GPDO2DO3D123.3°120.0°
O3GPDO1DHOD1180.0°60.0°
O3GPDO3DC6A2.5°180.0°
O1DPDO2DO3D128.0°120.0°
O1DPDO3DC6A118.1°60.0°
O2DPDO1DHOD170.6°180.0°
O2DPDO3DC6A119.4°60.0°
O3DPDO1DHOD153.5°60.0°
PDO3DC6AC6144.4°180.0°
PDO3DC6AH6A119.2°60.0°
PDO3DC6AH6A290.3°60.0°
O3DC6AC6N563.4°0.0°
O3DC6AC6H6A1125.2°120.0°
O3DC6AC6H6A2125.2°120.0°
O3DC6AC6C7116.7°180.0°
O3DC6AH6A1H6A2118.8°120.0°
N1C2N2N3180.0°179.6°
N1C2N2HN21180.0°0.1°
N1C2N2HN2254.8°179.8°
N1C2N3C40.0°0.4°
N1C2N3HN3180.0°179.8°
C2N1C9N8180.0°178.9°
C2N1C9C100.1°0.5°
C9N1C2N2180.0°179.9°
C9N1C2N30.0°0.3°
N1C9C10C40.1°0.6°
N1C9C10N5180.0°179.2°
N1C9N8C7180.0°151.5°
N1C9N8C10179.9°179.4°
N1C9N8HN854.8°28.4°
C2N2HN21HN22125.2°179.7°
N2C2N3C4180.0°180.0°
N2C2N3HN30.0°0.6°
N3C2N2HN210.0°179.7°
N3C2N2HN22125.3°0.6°
C2N3C4HN3180.0°179.5°
C2N3C4O4180.0°179.8°
C2N3C4C100.0°0.5°
N3C4O4C10180.0°179.7°
N3C4C10N5180.0°179.2°
N3C4C10C90.1°0.7°
HN3N3C4O40.0°0.3°
HN3N3C4C10179.9°180.0°
O4C4C10N50.0°0.5°
O4C4C10C9180.0°179.7°
C4C10N5C6180.0°167.1°
C4C10N5C9179.9°179.8°
C4C10C9N8180.0°178.8°
N5C6C6AC7180.0°180.0°
N5C6C6AH6A1171.4°120.0°
N5C6C6AH6A261.8°120.0°
N5C6C7N80.0°26.9°
N5C6C7H71125.3°93.0°
N5C6C7H72125.2°146.8°
C6N5C10C90.0°12.8°
C10N5C6C6A180.0°178.2°
C10N5C6C70.0°1.8°
N5C10C9N80.1°1.4°
C6C6AH6A1H6A2118.9°120.0°
C6AC6C7N8180.0°153.1°
C6AC6C7H7154.8°87.0°
C6AC6C7H7254.7°33.1°
C7C6C6AH6A18.6°60.0°
C7C6C6AH6A2118.1°60.0°
C6C7N8H71125.2°119.9°
C6C7N8H72125.2°119.9°
C6C7H71H72117.0°120.1°
C6C7N8C90.1°39.7°
C6C7N8HN8125.3°140.3°
N8C7H71H72117.1°120.2°
C7N8C9HN8125.2°180.0°
C7N8C9C100.1°29.1°
H71C7N8C9125.3°80.2°
H71C7N8HN8109.5°99.8°
H72C7N8C9125.2°159.6°
H72C7N8HN80.1°20.4°
HN8N8C9C10125.3°151.0°

222415

PDB entries from 2024-07-10

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