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A3D

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PAO1Adoub1.48Å1.43Å
PAO2Asing1.61Å1.53Å
PAO5Bsing1.61Å1.58Å
PAO3sing1.61Å1.57Å
O2AHOA2sing0.97Å0.95Å
O5BC5Bsing1.43Å1.44Å
C5BC4Bsing1.53Å1.53Å
C5BH51Asing1.09Å1.10Å
C5BH52Asing1.09Å1.10Å
C4BO4Bsing1.44Å1.48Å
C4BC3Bsing1.54Å1.59Å
C4BH4Bsing1.09Å1.10Å
O4BC1Bsing1.44Å1.39Å
C3BO3Bsing1.43Å1.43Å
C3BC2Bsing1.55Å1.53Å
C3BH3Bsing1.09Å1.10Å
O3BHO3Asing0.97Å0.95Å
C2BO2Bsing1.43Å1.43Å
C2BC1Bsing1.55Å1.51Å
C2BH2Bsing1.09Å1.10Å
O2BHO2Asing0.97Å0.95Å
C1BN9Asing1.46Å1.43Å
C1BH1Bsing1.09Å1.10Å
N9AC8Asing1.36Å1.37ÅAromatic
N9AC4Asing1.37Å1.34ÅAromatic
C8AN7Adoub1.30Å1.31ÅAromatic
C8AH8Asing1.08Å1.08Å
N7AC5Asing1.36Å1.37ÅAromatic
C5AC6Adoub1.40Å1.39ÅAromatic
C5AC4Asing1.40Å1.40ÅAromatic
C6AN6Asing1.38Å1.36Å
C6AN1Asing1.33Å1.40ÅAromatic
N6AH61Asing0.97Å1.00Å
N6AH62Asing0.97Å1.00Å
N1AC2Adoub1.32Å1.41ÅAromatic
C2AN3Asing1.32Å1.39ÅAromatic
C2AH2Asing1.08Å1.08Å
N3AC4Adoub1.33Å1.39ÅAromatic
O3PNsing1.61Å1.59Å
PNO1Ndoub1.54Å1.50Å
PNO2Nsing1.55Å1.49Å
PNO5Dsing1.61Å1.58Å
O5DC5Dsing1.43Å1.47Å
C5DC4Dsing1.53Å1.51Å
C5DH51Nsing1.09Å1.10Å
C5DH52Nsing1.09Å1.10Å
C4DO4Dsing1.44Å1.44Å
C4DC3Dsing1.54Å1.58Å
C4DH4Dsing1.09Å1.10Å
O4DC1Dsing1.44Å1.44Å
C3DO3Dsing1.43Å1.44Å
C3DC2Dsing1.55Å1.51Å
C3DH3Dsing1.09Å1.10Å
O3DHO3Nsing0.97Å0.95Å
C2DO2Dsing1.43Å1.42Å
C2DC1Dsing1.55Å1.47Å
C2DH2Dsing1.09Å1.10Å
O2DHO2Nsing0.97Å0.95Å
C1DN1Nsing1.47Å1.48Å
C1DH1Dsing1.09Å1.10Å
N1NC2Ndoub1.32Å1.39ÅAromatic
N1NC6Nsing1.32Å1.43ÅAromatic
C2NC3Nsing1.40Å1.38ÅAromatic
C2NH2Nsing1.08Å1.08Å
C3NC7Nsing1.47Å1.51Å
C3NC4Ndoub1.40Å1.46ÅAromatic
C7NO7Ndoub1.21Å1.22Å
C7NC8Nsing1.51Å1.51Å
C8NH81Nsing1.09Å1.10Å
C8NH82Nsing1.09Å1.10Å
C8NH83Nsing1.09Å1.10Å
C4NC5Nsing1.38Å1.42ÅAromatic
C4NH4Nsing1.08Å1.08Å
C5NC6Ndoub1.38Å1.43ÅAromatic
C5NH5Nsing1.08Å1.08Å
C6NH6Nsing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1APAO2A117.7°109.5°
O1APAO5B107.1°109.5°
O1APAO3111.1°109.5°
O2APAO5B108.1°109.5°
O2APAO3108.0°109.4°
PAO2AHOA2109.5°114.0°
O5BPAO3104.0°109.5°
PAO5BC5B121.0°123.0°
PAO3PN134.1°134.0°
O5BC5BC4B96.4°109.5°
O5BC5BH51A116.7°109.5°
O5BC5BH52A114.1°109.5°
C4BC5BH51A116.7°109.4°
C4BC5BH52A114.1°109.5°
C5BC4BO4B112.0°109.9°
C5BC4BC3B118.5°109.9°
C5BC4BH4B99.4°109.8°
H51AC5BH52A99.9°109.5°
O4BC4BC3B103.6°107.3°
O4BC4BH4B115.4°109.9°
C4BO4BC1B109.9°107.0°
C3BC4BH4B108.4°110.0°
C4BC3BO3B109.9°110.5°
C4BC3BC2B103.8°104.2°
C4BC3BH3B114.7°110.5°
O4BC1BC2B106.6°103.5°
O4BC1BN9A114.1°110.6°
O4BC1BH1B109.4°110.6°
O3BC3BC2B114.4°110.5°
O3BC3BH3B104.1°110.4°
C3BO3BHO3A109.5°114.0°
C2BC3BH3B110.2°110.6°
C3BC2BO2B115.1°110.9°
C3BC2BC1B101.8°102.1°
C3BC2BH2B111.1°110.9°
O2BC2BC1B110.0°110.9°
O2BC2BH2B103.1°110.8°
C2BO2BHO2A109.5°114.0°
C1BC2BH2B116.2°111.0°
C2BC1BN9A112.5°110.6°
C2BC1BH1B111.0°110.6°
N9AC1BH1B103.1°110.7°
C1BN9AC8A132.1°126.3°
C1BN9AC4A121.2°126.3°
C8AN9AC4A106.7°107.4°
N9AC8AN7A113.7°110.0°
N9AC8AH8A123.2°125.0°
N9AC4AC5A105.5°106.0°
N9AC4AN3A129.4°134.9°
N7AC8AH8A123.1°125.0°
C8AN7AC5A103.4°109.4°
N7AC5AC6A129.9°134.6°
N7AC5AC4A110.6°107.2°
C6AC5AC4A119.5°118.2°
C5AC6AN6A126.9°120.8°
C5AC6AN1A116.9°118.5°
C5AC4AN3A125.0°119.1°
N6AC6AN1A116.2°120.7°
C6AN6AH61A109.5°120.0°
C6AN6AH62A109.5°120.0°
C6AN1AC2A121.6°121.1°
H61AN6AH62A109.4°120.0°
N1AC2AN3A122.4°122.5°
N1AC2AH2A118.8°118.8°
N3AC2AH2A118.8°118.7°
C2AN3AC4A114.6°120.6°
O3PNO1N109.1°109.5°
O3PNO2N106.2°109.5°
O3PNO5D101.1°109.5°
O1NPNO2N117.2°109.4°
O1NPNO5D108.4°109.4°
O2NPNO5D113.6°109.5°
PNO5DC5D116.3°123.0°
O5DC5DC4D110.8°109.5°
O5DC5DH51N108.8°109.5°
O5DC5DH52N109.1°109.5°
C4DC5DH51N108.7°109.4°
C4DC5DH52N109.0°109.5°
C5DC4DO4D111.6°109.9°
C5DC4DC3D116.8°109.9°
C5DC4DH4D101.4°109.9°
H51NC5DH52N110.5°109.5°
O4DC4DC3D105.2°107.3°
O4DC4DH4D113.9°109.9°
C4DO4DC1D107.8°107.0°
C3DC4DH4D108.2°110.0°
C4DC3DO3D110.4°110.5°
C4DC3DC2D101.9°104.2°
C4DC3DH3D115.0°110.5°
O4DC1DC2D106.5°103.5°
O4DC1DN1N105.9°110.6°
O4DC1DH1D117.3°110.7°
O3DC3DC2D113.1°110.5°
O3DC3DH3D104.2°110.4°
C3DO3DHO3N109.5°114.0°
C2DC3DH3D112.5°110.6°
C3DC2DO2D113.0°110.9°
C3DC2DC1D101.0°102.1°
C3DC2DH2D113.3°110.9°
O2DC2DC1D111.0°110.9°
O2DC2DH2D103.7°110.8°
C2DO2DHO2N109.5°114.0°
C1DC2DH2D115.2°111.0°
C2DC1DN1N118.6°110.6°
C2DC1DH1D104.2°110.7°
N1NC1DH1D104.9°110.6°
C1DN1NC2N119.3°119.1°
C1DN1NC6N117.2°119.0°
C2NN1NC6N123.5°121.9°
N1NC2NC3N119.1°120.5°
N1NC2NH2N120.5°119.7°
N1NC6NC5N116.9°121.2°
N1NC6NH6N121.6°119.4°
C3NC2NH2N120.5°119.8°
C2NC3NC7N118.1°120.6°
C2NC3NC4N121.2°118.8°
C7NC3NC4N120.7°120.6°
C3NC7NO7N116.7°120.0°
C3NC7NC8N120.6°120.0°
C3NC4NC5N118.0°118.3°
C3NC4NH4N121.1°120.9°
O7NC7NC8N122.7°120.1°
C7NC8NH81N109.5°109.5°
C7NC8NH82N109.4°109.5°
C7NC8NH83N109.5°109.5°
H81NC8NH82N109.5°109.4°
H81NC8NH83N109.5°109.5°
H82NC8NH83N109.5°109.4°
C5NC4NH4N121.0°120.8°
C4NC5NC6N121.4°119.3°
C4NC5NH5N119.3°120.3°
C6NC5NH5N119.3°120.4°
C5NC6NH6N121.6°119.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1APAO2AO5B121.4°120.0°
O1APAO2AO3126.7°120.0°
O1APAO5BO3117.6°120.0°
O1APAO2AHOA232.2°180.0°
O1APAO5BC5B176.2°55.0°
O1APAO3PN29.8°45.0°
O2APAO5BO3114.6°120.0°
O2APAO5BC5B56.1°65.0°
O2APAO3PN160.3°75.0°
O5BPAO2AHOA289.2°59.9°
PAO5BC5BC4B152.8°180.0°
PAO5BC5BH51A28.6°60.1°
PAO5BC5BH52A87.2°60.0°
O5BPAO3PN85.0°165.0°
O3PAO2AHOA2158.9°60.0°
O3PAO5BC5B58.5°175.0°
PAO3PNO1N82.0°40.0°
PAO3PNO2N45.1°80.0°
PAO3PNO5D164.0°160.0°
O5BC5BC4BH51A124.2°120.0°
O5BC5BC4BH52A120.0°120.0°
O5BC5BH51AH52A123.5°120.0°
O5BC5BC4BO4B175.9°66.4°
O5BC5BC4BC3B63.5°175.7°
O5BC5BC4BH4B53.5°54.5°
C4BC5BH51AH52A123.5°120.0°
C5BC4BO4BC3B128.9°119.4°
C5BC4BO4BH4B112.7°120.9°
C5BC4BC3BH4B112.1°121.1°
C5BC4BO4BC1B139.9°146.0°
C5BC4BC3BO3B125.5°119.8°
C5BC4BC3BC2B111.6°121.4°
C5BC4BC3BH3B8.7°2.7°
H51AC5BC4BO4B59.9°53.5°
H51AC5BC4BC3B60.7°64.3°
H51AC5BC4BH4B177.7°174.5°
H52AC5BC4BO4B55.9°173.5°
H52AC5BC4BC3B176.5°55.7°
H52AC5BC4BH4B66.5°65.5°
O4BC4BC3BH4B123.1°119.5°
O4BC4BC3BO3B109.7°120.7°
O4BC4BC3BC2B13.1°2.0°
O4BC4BC3BH3B133.5°116.7°
C4BO4BC1BC2B31.7°40.1°
C4BO4BC1BN9A156.6°158.6°
C4BO4BC1BH1B88.5°78.4°
C3BC4BO4BC1B11.0°26.5°
C4BC3BO3BC2B116.3°114.8°
C4BC3BO3BH3B123.3°122.6°
C4BC3BC2BH3B123.3°118.7°
C4BC3BO3BHO3A20.4°179.9°
C4BC3BC2BO2B149.2°139.1°
C4BC3BC2BC1B30.3°20.9°
C4BC3BC2BH2B94.1°97.4°
H4BC4BO4BC1B107.4°93.1°
H4BC4BC3BO3B13.4°1.2°
H4BC4BC3BC2B136.3°117.5°
H4BC4BC3BH3B103.4°123.8°
O4BC1BC2BC3B38.7°37.1°
O4BC1BC2BO2B161.3°155.2°
O4BC1BC2BN9A125.8°118.5°
O4BC1BC2BH1B119.1°118.5°
O4BC1BC2BH2B82.1°81.2°
O4BC1BN9AH1B118.6°122.9°
O4BC1BN9AC8A88.8°23.6°
O4BC1BN9AC4A94.1°156.8°
O3BC3BC2BH3B116.9°122.6°
O3BC3BC2BO2B29.4°20.4°
O3BC3BC2BC1B89.5°97.8°
O3BC3BC2BH2B146.1°143.9°
C2BC3BO3BHO3A95.9°65.1°
C3BC2BO2BC1B114.3°112.7°
C3BC2BO2BH2B121.2°123.6°
C3BC2BC1BH2B120.9°118.3°
C3BC2BO2BHO2A130.1°61.5°
C3BC2BC1BN9A164.5°155.5°
C3BC2BC1BH1B80.4°81.4°
H3BC3BO3BHO3A143.8°57.5°
H3BC3BC2BO2B87.5°102.2°
H3BC3BC2BC1B153.6°139.6°
H3BC3BC2BH2B29.2°21.3°
O2BC2BC1BH2B116.6°123.5°
O2BC2BC1BN9A72.9°86.3°
O2BC2BC1BH1B42.1°36.8°
C1BC2BO2BHO2A15.9°174.2°
C2BC1BN9AH1B119.7°123.0°
C2BC1BN9AC8A32.9°90.5°
C2BC1BN9AC4A144.3°89.2°
H2BC2BO2BHO2A108.6°62.2°
H2BC2BC1BN9A43.7°37.3°
H2BC2BC1BH1B158.7°160.3°
C1BN9AC8AC4A177.4°179.7°
C1BN9AC8AN7A177.0°179.9°
C1BN9AC8AH8A3.0°0.0°
C1BN9AC4AC5A177.3°179.9°
C1BN9AC4AN3A2.3°0.9°
H1BC1BN9AC8A152.6°146.5°
H1BC1BN9AC4A24.5°33.9°
N9AC8AN7AH8A180.0°179.9°
N9AC8AN7AC5A0.2°0.0°
C8AN9AC4AC5A0.5°0.4°
C8AN9AC4AN3A179.9°179.5°
C4AN9AC8AN7A0.5°0.2°
C4AN9AC8AH8A179.5°179.7°
N9AC4AC5AN7A0.4°0.4°
N9AC4AC5AC6A179.6°179.8°
N9AC4AC5AN3A179.7°179.2°
N9AC4AN3AC2A179.9°179.5°
C8AN7AC5AC6A179.9°180.0°
C8AN7AC5AC4A0.1°0.3°
H8AC8AN7AC5A179.8°179.9°
N7AC5AC6AC4A179.9°179.7°
N7AC5AC6AN6A0.5°0.0°
N7AC5AC6AN1A179.8°180.0°
N7AC5AC4AN3A180.0°179.6°
C5AC6AN6AN1A179.8°180.0°
C5AC6AN6AH61A11.8°0.1°
C5AC6AN6AH62A131.7°180.0°
C5AC6AN1AC2A0.2°0.0°
C6AC5AC4AN3A0.1°0.6°
C4AC5AC6AN6A179.5°179.7°
C4AC5AC6AN1A0.3°0.3°
C5AC4AN3AC2A0.3°0.6°
C6AN6AH61AH62A120.0°180.0°
N6AC6AN1AC2A179.6°180.0°
N1AC6AN6AH61A168.5°180.0°
N1AC6AN6AH62A48.5°0.0°
C6AN1AC2AN3A0.2°0.0°
C6AN1AC2AH2A179.8°180.0°
N1AC2AN3AH2A180.0°179.9°
N1AC2AN3AC4A0.4°0.3°
H2AC2AN3AC4A179.6°179.7°
O3PNO1NO2N120.7°120.0°
O3PNO1NO5D109.2°120.0°
O3PNO2NO5D110.2°120.0°
O3PNO5DC5D73.1°175.1°
O1NPNO2NO5D127.7°120.0°
O1NPNO5DC5D172.3°55.1°
O2NPNO5DC5D40.3°64.9°
PNO5DC5DC4D174.7°180.0°
PNO5DC5DH51N65.9°60.1°
PNO5DC5DH52N54.7°59.9°
O5DC5DC4DH51N119.5°119.9°
O5DC5DC4DH52N120.0°120.1°
O5DC5DH51NH52N119.7°120.1°
O5DC5DC4DO4D64.8°66.4°
O5DC5DC4DC3D56.3°175.8°
O5DC5DC4DH4D173.6°54.6°
C4DC5DH51NH52N119.6°120.0°
C5DC4DO4DC3D127.6°119.4°
C5DC4DO4DH4D114.0°121.0°
C5DC4DC3DH4D113.5°121.1°
C5DC4DO4DC1D131.3°145.9°
C5DC4DC3DO3D136.6°119.9°
C5DC4DC3DC2D103.0°121.5°
C5DC4DC3DH3D19.0°2.7°
H51NC5DC4DO4D54.7°53.5°
H51NC5DC4DC3D175.8°64.3°
H51NC5DC4DH4D66.9°174.5°
H52NC5DC4DO4D175.2°173.5°
H52NC5DC4DC3D63.7°55.7°
H52NC5DC4DH4D53.6°65.5°
O4DC4DC3DH4D122.1°119.4°
O4DC4DC3DO3D99.0°120.7°
O4DC4DC3DC2D21.4°2.0°
O4DC4DC3DH3D143.4°116.8°
C4DO4DC1DC2D28.9°40.1°
C4DO4DC1DN1N156.0°158.6°
C4DO4DC1DH1D87.3°78.5°
C3DC4DO4DC1D3.6°26.5°
C4DC3DO3DC2D113.4°114.7°
C4DC3DO3DH3D124.1°122.6°
C4DC3DC2DH3D123.7°118.7°
C4DC3DO3DHO3N57.3°180.0°
C4DC3DC2DO2D156.1°139.1°
C4DC3DC2DC1D37.5°20.9°
C4DC3DC2DH2D86.3°97.4°
H4DC4DO4DC1D114.7°93.0°
H4DC4DC3DO3D23.1°1.2°
H4DC4DC3DC2D143.5°117.4°
H4DC4DC3DH3D94.6°123.8°
O4DC1DC2DC3D41.9°37.0°
O4DC1DC2DO2D162.0°155.2°
O4DC1DC2DN1N119.2°118.5°
O4DC1DC2DH1D124.7°118.6°
O4DC1DC2DH2D80.5°81.2°
O4DC1DN1NH1D124.7°123.0°
O4DC1DN1NC2N103.1°141.5°
O4DC1DN1NC6N77.3°38.2°
O3DC3DC2DH3D117.8°122.6°
O3DC3DC2DO2D37.6°20.4°
O3DC3DC2DC1D81.1°97.8°
O3DC3DC2DH2D155.2°143.9°
C2DC3DO3DHO3N56.1°65.3°
C3DC2DO2DC1D112.7°112.7°
C3DC2DO2DH2D123.0°123.6°
C3DC2DC1DH2D122.4°118.2°
C3DC2DO2DHO2N78.2°61.5°
C3DC2DC1DN1N161.0°155.5°
C3DC2DC1DH1D82.8°81.5°
H3DC3DO3DHO3N178.6°57.4°
H3DC3DC2DO2D80.1°102.2°
H3DC3DC2DC1D161.2°139.6°
H3DC3DC2DH2D37.4°21.3°
O2DC2DC1DH2D117.4°123.6°
O2DC2DC1DN1N78.8°86.3°
O2DC2DC1DH1D37.3°36.6°
C1DC2DO2DHO2N169.1°174.1°
C2DC1DN1NH1D115.8°123.0°
C2DC1DN1NC2N137.4°104.5°
C2DC1DN1NC6N42.2°75.8°
H2DC2DO2DHO2N44.9°62.1°
H2DC2DC1DN1N38.6°37.3°
H2DC2DC1DH1D154.8°160.3°
C1DN1NC2NC6N179.5°179.7°
C1DN1NC2NC3N179.6°179.9°
C1DN1NC2NH2N0.4°0.0°
C1DN1NC6NC5N179.7°179.8°
C1DN1NC6NH6N0.3°0.1°
H1DC1DN1NC2N21.6°18.5°
H1DC1DN1NC6N157.9°161.2°
N1NC2NC3NH2N180.0°179.9°
N1NC2NC3NC7N179.9°180.0°
N1NC2NC3NC4N0.2°0.1°
C2NN1NC6NC5N0.2°0.6°
C2NN1NC6NH6N179.8°179.8°
C6NN1NC2NC3N0.1°0.2°
C6NN1NC2NH2N179.9°179.7°
N1NC6NC5NC4N0.0°0.6°
N1NC6NC5NH6N180.0°179.6°
N1NC6NC5NH5N180.0°179.7°
C2NC3NC7NC4N179.9°179.9°
C2NC3NC7NO7N179.6°0.1°
C2NC3NC7NC8N0.3°180.0°
C2NC3NC4NC5N0.5°0.1°
C2NC3NC4NH4N179.5°179.9°
H2NC2NC3NC7N0.1°0.1°
H2NC2NC3NC4N179.8°180.0°
C3NC7NO7NC8N179.9°179.9°
C3NC7NC8NH81N45.9°90.1°
C3NC7NC8NH82N74.1°150.0°
C3NC7NC8NH83N165.9°30.0°
C7NC3NC4NC5N179.7°180.0°
C7NC3NC4NH4N0.3°0.0°
C4NC3NC7NO7N0.3°180.0°
C4NC3NC7NC8N179.8°0.0°
C3NC4NC5NH4N180.0°180.0°
C3NC4NC5NC6N0.4°0.3°
C3NC4NC5NH5N179.7°180.0°
O7NC7NC8NH81N134.0°90.0°
O7NC7NC8NH82N106.0°29.9°
O7NC7NC8NH83N14.0°149.9°
C7NC8NH81NH82N120.0°120.0°
C7NC8NH81NH83N120.0°120.1°
C7NC8NH82NH83N120.0°120.1°
H81NC8NH82NH83N120.0°120.0°
C4NC5NC6NH5N180.0°179.7°
C4NC5NC6NH6N179.9°179.8°
H4NC4NC5NC6N179.6°179.7°
H4NC4NC5NH5N0.3°0.0°
H5NC5NC6NH6N0.1°0.1°

246704

PDB entries from 2025-12-24

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