Loading
PDBj
✖
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

A1PRD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C11C10sing1.53Å1.54Å
C11C12sing1.53Å1.52Å
C13C14sing1.54Å1.52Å
C13C12sing1.53Å1.56Å
C14C15sing1.54Å1.53Å
C10C8sing1.53Å1.54Å
C12C15sing1.53Å1.55Å
C12N3sing1.47Å1.49Å
O2C6doub1.22Å1.22Å
C8C9sing1.51Å1.53Å
C8C7sing1.53Å1.55Å
N3C6sing1.35Å1.36Å
N3C7sing1.47Å1.47Å
C6C5sing1.48Å1.49Å
O3C9doub1.21Å1.25Å
C9O4sing1.34Å1.24Å
C16C5doub1.40Å1.40ÅAromatic
C16C17sing1.38Å1.41ÅAromatic
C5C4sing1.40Å1.41ÅAromatic
C17C2doub1.39Å1.42ÅAromatic
C4C3doub1.38Å1.40ÅAromatic
C2C3sing1.39Å1.40ÅAromatic
C2N2sing1.39Å1.42Å
O1C1doub1.22Å1.23Å
N2C1sing1.35Å1.34Å
C1N1sing1.35Å1.33Å
C13H13sing1.09Å1.10Å
C13H14sing1.09Å1.10Å
C17H20sing1.08Å1.08Å
C16H19sing1.08Å1.08Å
C15H18sing1.09Å1.10Å
C15H17sing1.09Å1.10Å
C11H11sing1.09Å1.10Å
C11H12sing1.09Å1.10Å
C10H10sing1.09Å1.10Å
C10H9sing1.09Å1.10Å
C14H16sing1.09Å1.10Å
C14H15sing1.09Å1.10Å
C3H4sing1.08Å1.08Å
C4H5sing1.08Å1.08Å
C7H6sing1.09Å1.10Å
C7H7sing1.09Å1.10Å
C8H8sing1.09Å1.10Å
N1H1sing0.97Å1.00Å
N1H2sing0.97Å1.00Å
N2H3sing0.97Å1.00Å
O4H21sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C10C11C12110.3°109.0°
C11C10C8109.1°109.5°
C10C11H11109.3°109.5°
C10C11H12109.3°109.5°
C11C10H10109.6°109.5°
C11C10H9109.6°109.4°
C11C12C13117.8°113.7°
C11C12C15117.5°113.7°
C11C12N3109.8°112.4°
C12C11H11109.3°109.6°
C12C11H12109.3°109.5°
C14C13C1289.5°86.9°
C13C14C1586.1°87.2°
C14C13H13114.2°113.7°
C14C13H14114.2°113.6°
C13C14H16114.9°113.6°
C13C14H15115.0°113.6°
C13C12C1584.1°87.6°
C13C12N3116.5°113.6°
C12C13H13114.2°113.6°
C12C13H14114.2°113.6°
C14C15C1289.8°86.9°
C14C15H18114.2°113.6°
C14C15H17114.1°113.7°
C15C14H16114.9°113.6°
C15C14H15114.9°113.6°
C10C8C9111.4°109.4°
C10C8C7110.3°109.6°
C8C10H10109.6°109.4°
C8C10H9109.6°109.5°
C10C8H8107.7°109.5°
C15C12N3109.0°113.7°
C12C15H18114.1°113.6°
C12C15H17114.1°113.7°
C12N3C6122.2°120.9°
C12N3C7112.3°118.2°
O2C6N3121.8°120.0°
O2C6C5113.2°120.0°
C9C8C7111.7°109.4°
C8C9O3118.3°120.0°
C8C9O4116.2°120.0°
C9C8H8107.9°109.4°
C8C7N3105.3°108.7°
C8C7H6110.5°109.6°
C8C7H7110.5°109.7°
C7C8H8107.6°109.5°
C6N3C7125.4°120.9°
N3C6C5124.7°120.0°
N3C7H6110.5°109.6°
N3C7H7110.5°109.7°
C6C5C16120.7°120.0°
C6C5C4119.3°120.1°
O3C9O4125.5°120.0°
C9O4H21109.5°117.1°
C5C16C17119.7°119.9°
C16C5C4119.3°119.9°
C5C16H19120.1°120.0°
C16C17C2120.6°120.1°
C16C17H20119.7°120.0°
C17C16H19120.1°120.1°
C5C4C3121.6°119.9°
C5C4H5119.2°120.0°
C17C2C3119.6°120.1°
C17C2N2123.5°119.9°
C2C17H20119.7°119.9°
C4C3C2119.1°120.1°
C4C3H4120.4°120.0°
C3C4H5119.2°120.1°
C3C2N2116.9°120.0°
C2C3H4120.5°119.9°
C2N2C1126.0°120.0°
C2N2H3117.0°120.0°
O1C1N2124.4°120.0°
O1C1N1123.8°120.0°
N2C1N1111.8°120.0°
C1N2H3117.0°120.0°
C1N1H1120.0°120.0°
C1N1H2120.0°120.0°
H13C13H14109.5°112.9°
H18C15H17109.5°112.9°
H11C11H12109.5°109.7°
H10C10H9109.5°109.5°
H16C14H15109.5°112.8°
H6C7H7109.5°109.6°
H1N1H2120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C10C11C12H11120.1°119.8°
C10C11C12H12120.1°119.8°
C10C11C12C13167.5°178.4°
C11C10C8H10120.0°120.0°
C11C10C8H9119.9°120.0°
C10C11C12C1569.3°80.2°
C10C11C12N356.0°50.7°
C11C10C8C9176.6°176.9°
C11C10C8C758.8°63.1°
C10C11H11H12119.6°120.2°
C11C10H10H9120.2°120.0°
C11C10C8H858.4°57.0°
C11C12C13C1494.0°140.1°
C11C12C13C15118.1°114.9°
C11C12C13N3133.6°130.2°
C11C12C15C1494.4°140.1°
C12C11C10C854.8°58.9°
C11C12C15N3125.6°130.3°
C11C12N3C6113.2°130.7°
C11C12N3C763.1°49.4°
C11C12C13H13149.5°25.6°
C11C12C13H1422.4°105.4°
C11C12C15H1822.1°105.5°
C11C12C15H17149.1°25.5°
C12C11H11H12119.6°120.2°
C12C11C10H10174.7°178.9°
C12C11C10H965.1°61.1°
C14C13C12H13116.5°114.5°
C14C13C12H14116.4°114.5°
C13C14C15H16115.7°114.6°
C13C14C15H15115.8°114.6°
C14C13C12C1524.0°25.2°
C14C13C12N3132.3°89.7°
C14C13H13H14129.4°131.4°
C13C14C15H18141.0°139.5°
C13C14C15H1792.0°89.5°
C13C14H16H15131.2°131.2°
C13C12C15N3116.0°114.8°
C13C12N3C623.9°0.2°
C13C12N3C7159.8°179.7°
C12C13H13H14129.5°131.3°
C13C12C15H18140.5°139.6°
C13C12C15H1792.6°89.5°
C13C12C11H1147.4°61.8°
C13C12C11H1272.4°58.6°
C12C13C14H1691.5°139.7°
C12C13C14H15140.0°89.5°
C14C15C12H18116.5°114.5°
C14C15C12H17116.5°114.6°
C14C15C12N3140.0°89.7°
C15C14C13H1392.2°89.4°
C15C14C13H14140.7°139.6°
C14C15H18H17129.3°131.4°
C15C14H16H15131.1°131.2°
C10C8C9C7123.8°120.1°
C10C8C9H8118.1°120.0°
C10C8C7H8117.3°120.1°
C10C8C7N362.0°56.4°
C10C8C9O398.0°0.0°
C10C8C9O481.5°180.0°
C8C10C11H11174.9°60.9°
C8C10C11H1265.3°178.8°
C8C10H10H9120.2°120.0°
C10C8C7H6178.7°176.2°
C10C8C7H757.3°63.5°
C15C12N3C6116.8°98.4°
C15C12N3C766.9°81.6°
C15C12C13H1392.5°89.4°
C15C12C13H14140.5°139.7°
C12C15H18H17129.3°131.3°
C15C12C11H1150.9°160.0°
C15C12C11H12170.6°39.7°
C12C15C14H1691.3°139.7°
C12C15C14H15140.3°89.5°
C12N3C6O22.1°6.5°
C12N3C7C864.3°51.2°
C12N3C6C7175.8°180.0°
C12N3C6C5174.2°173.5°
N3C12C13H1315.9°155.8°
N3C12C13H14111.2°24.8°
N3C12C15H18103.5°24.8°
N3C12C15H1723.5°155.7°
N3C12C11H11176.1°69.1°
N3C12C11H1264.1°170.6°
C12N3C7H6176.3°170.9°
C12N3C7H755.0°68.7°
O2C6N3C5172.1°180.0°
O2C6N3C7177.9°173.5°
O2C6C5C1639.5°36.6°
O2C6C5C4130.9°143.9°
C9C8C7H8118.3°119.9°
C9C8C7N3173.5°176.4°
C8C9O3O4179.4°180.0°
C9C8C10H1056.6°56.9°
C9C8C10H963.5°63.1°
C9C8C7H654.2°63.9°
C9C8C7H767.1°56.5°
C8C9O4H21179.4°180.0°
C8C7N3C6111.8°128.8°
C8C7N3H6119.3°119.7°
C8C7N3H7119.3°119.9°
C7C8C9O3138.2°120.1°
C7C8C9O442.4°59.9°
C7C8C10H10178.7°176.9°
C7C8C10H961.1°56.9°
C8C7H6H7122.0°120.4°
N3C6C5C16147.8°143.4°
N3C6C5C441.8°36.1°
C6N3C7H67.5°9.1°
C6N3C7H7128.8°111.3°
C7N3C6C510.0°6.5°
N3C7H6H7121.9°120.5°
N3C7C8H855.2°63.6°
C6C5C16C4170.4°179.5°
C6C5C16C17175.0°180.0°
C6C5C4C3175.3°179.7°
C6C5C16H195.0°0.0°
C6C5C4H54.7°0.3°
O3C9C8H820.1°119.9°
O3C9O4H210.0°0.0°
O4C9C8H8160.5°60.0°
C5C16C17H19180.0°180.0°
C5C16C17C22.2°0.0°
C16C5C4C34.7°0.8°
C5C16C17H20177.7°179.7°
C16C5C4H5175.3°179.8°
C17C16C5C44.5°0.5°
C16C17C2H20180.0°179.8°
C16C17C2C30.0°0.2°
C16C17C2N2178.6°179.7°
C5C4C3H5180.0°179.4°
C5C4C3C22.5°0.6°
C4C5C16H19175.5°179.5°
C5C4C3H4177.5°179.5°
C17C2C3C40.1°0.1°
C17C2C3N2178.7°179.9°
C17C2N2C14.1°35.3°
C2C17C16H19177.8°180.0°
C17C2C3H4179.9°180.0°
C17C2N2H3175.9°144.6°
C4C3C2H4180.0°179.9°
C4C3C2N2178.8°180.0°
C3C2N2C1177.3°144.8°
C3C2C17H20180.0°180.0°
C2C3C4H5177.5°180.0°
C3C2N2H32.7°35.4°
C2N2C1O10.6°4.6°
C2N2C1H3180.0°179.9°
C2N2C1N1179.1°175.3°
N2C2C17H201.4°0.0°
N2C2C3H41.2°0.1°
O1C1N2N1179.8°179.9°
O1C1N1H10.0°180.0°
O1C1N1H2180.0°0.0°
O1C1N2H3179.4°175.3°
N2C1N1H1179.7°0.1°
N2C1N1H20.2°180.0°
C1N1H1H2180.0°179.9°
N1C1N2H30.9°4.8°
H13C13C14H16152.0°25.2°
H13C13C14H1523.5°156.0°
H14C13C14H1625.0°105.8°
H14C13C14H15103.5°24.9°
H20C17C16H192.3°0.3°
H18C15C14H1625.3°105.9°
H18C15C14H15103.2°24.9°
H17C15C14H16152.2°25.1°
H17C15C14H1523.8°155.9°
H11C11C10H1065.1°59.1°
H11C11C10H955.0°179.0°
H12C11C10H1054.6°61.3°
H12C11C10H9174.8°58.7°
H10C10C8H861.6°63.0°
H9C10C8H8178.3°177.0°
H4C3C4H52.5°0.1°
H6C7C8H864.1°56.1°
H7C7C8H8174.6°176.4°

262513

PDB entries from 2026-11-04

PDB statisticsPDBj update infoContact PDBjnumon