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Summary Geometry Related PDB entries

A1MBM

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C08	C09	sing	1.38Å	1.41Å	Aromatic
C08	C07	doub	1.40Å	1.36Å	Aromatic
C09	C10	doub	1.39Å	1.44Å	Aromatic
C07	C06	sing	1.47Å	1.59Å	Aromatic
C07	C12	sing	1.41Å	1.51Å	Aromatic
C06	C05	doub	1.34Å	1.39Å	Aromatic
C10	C11	sing	1.38Å	1.41Å	Aromatic
C12	C11	doub	1.39Å	1.36Å	Aromatic
C12	N04	sing	1.38Å	1.56Å	Aromatic
C05	N04	sing	1.37Å	1.31Å	Aromatic
N04	C02	sing	1.35Å	1.45Å
C02	O03	doub	1.21Å	1.18Å
C02	H1	sing	1.08Å	1.08Å
C05	H2	sing	1.08Å	1.08Å
C06	H3	sing	1.08Å	1.08Å
C08	H4	sing	1.08Å	1.08Å
C09	H5	sing	1.08Å	1.08Å
C10	H6	sing	1.08Å	1.08Å
C11	H7	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C09	C08	C07	119.7°	119.7°
C08	C09	C10	120.2°	120.4°
C09	C08	H4	120.2°	120.2°
C08	C09	H5	119.9°	119.8°
C08	C07	C06	130.2°	133.9°
C08	C07	C12	120.0°	119.9°
C07	C08	H4	120.2°	120.1°
C09	C10	C11	120.7°	120.6°
C10	C09	H5	119.9°	119.8°
C09	C10	H6	119.7°	119.7°
C06	C07	C12	109.9°	106.1°
C07	C06	C05	97.7°	107.2°
C07	C06	H3	131.1°	126.4°
C07	C12	C11	120.3°	119.5°
C07	C12	N04	102.8°	107.1°
C06	C05	N04	124.5°	109.9°
C06	C05	H2	117.8°	125.0°
C05	C06	H3	131.2°	126.4°
C10	C11	C12	119.2°	119.9°
C11	C10	H6	119.7°	119.7°
C10	C11	H7	120.4°	120.0°
C11	C12	N04	136.9°	133.4°
C12	C11	H7	120.4°	120.0°
C12	N04	C05	105.2°	109.7°
C12	N04	C02	127.0°	125.2°
C05	N04	C02	127.8°	125.2°
N04	C05	H2	117.8°	125.1°
N04	C02	O03	123.0°	120.0°
N04	C02	H1	118.5°	120.0°
O03	C02	H1	118.5°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C09	C08	C07	H4	180.0°	180.0°
C08	C09	C10	H5	180.0°	180.0°
C09	C08	C07	C06	179.9°	180.0°
C09	C08	C07	C12	0.1°	0.0°
C08	C09	C10	C11	0.0°	0.0°
C08	C09	C10	H6	179.9°	180.0°
C07	C08	C09	C10	0.1°	0.0°
C08	C07	C06	C12	180.0°	179.9°
C08	C07	C06	C05	179.1°	180.0°
C08	C07	C12	C11	0.1°	0.1°
C08	C07	C12	N04	179.8°	180.0°
C08	C07	C06	H3	0.9°	0.1°
C07	C08	C09	H5	180.0°	180.0°
C09	C10	C11	H6	180.0°	180.0°
C09	C10	C11	C12	0.1°	0.0°
C10	C09	C08	H4	179.9°	180.0°
C09	C10	C11	H7	179.9°	180.0°
C07	C06	C05	H3	180.0°	179.9°
C06	C07	C12	C11	179.9°	180.0°
C06	C07	C12	N04	0.2°	0.1°
C07	C06	C05	N04	2.0°	0.0°
C07	C06	C05	H2	178.0°	179.8°
C06	C07	C08	H4	0.1°	0.1°
C12	C07	C06	C05	0.9°	0.0°
C07	C12	C11	C10	0.0°	0.1°
C07	C12	C11	N04	180.0°	179.9°
C07	C12	N04	C05	1.2°	0.1°
C07	C12	N04	C02	178.2°	179.8°
C12	C07	C06	H3	179.1°	180.0°
C12	C07	C08	H4	179.9°	180.0°
C07	C12	C11	H7	180.0°	180.0°
C06	C05	N04	C12	2.2°	0.0°
C06	C05	N04	H2	180.0°	179.8°
C06	C05	N04	C02	177.2°	179.7°
C10	C11	C12	H7	180.0°	179.9°
C10	C11	C12	N04	179.9°	180.0°
C11	C10	C09	H5	179.9°	180.0°
C11	C12	N04	C05	178.8°	179.9°
C11	C12	N04	C02	1.7°	0.3°
C12	C11	C10	H6	179.9°	180.0°
C12	N04	C05	C02	179.4°	179.7°
C12	N04	C02	O03	1.2°	179.7°
C12	N04	C02	H1	178.8°	0.6°
C12	N04	C05	H2	177.8°	179.7°
N04	C12	C11	H7	0.1°	0.1°
C05	N04	C02	O03	179.6°	0.0°
C05	N04	C02	H1	0.5°	179.8°
N04	C05	C06	H3	178.0°	179.9°
N04	C02	O03	H1	180.0°	179.8°
C02	N04	C05	H2	2.8°	0.0°
H2	C05	C06	H3	2.0°	0.3°
H4	C08	C09	H5	0.0°	0.0°
H5	C09	C10	H6	0.1°	0.0°
H6	C10	C11	H7	0.1°	0.0°

255239

PDB entries from 2026-06-17

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