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Summary Geometry Related PDB entries

A1L2C

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	doub	1.36Å	1.39Å	Aromatic
C1	C6	sing	1.40Å	1.38Å	Aromatic
C2	C3	sing	1.39Å	1.39Å	Aromatic
C3	C4	doub	1.38Å	1.39Å	Aromatic
C3	O2	sing	1.36Å	1.40Å
C4	C5	sing	1.39Å	1.39Å	Aromatic
C5	C6	doub	1.41Å	1.39Å	Aromatic
C5	O1	sing	1.35Å	1.34Å
C6	C9	sing	1.46Å	1.40Å
O1	C7	sing	1.34Å	1.33Å
C7	C8	sing	1.41Å	1.38Å
C7	O4	doub	1.22Å	1.19Å
C8	C9	doub	1.36Å	1.39Å
C9	C10	sing	1.51Å	1.53Å
C10	O3	sing	1.43Å	1.40Å
C1	H1	sing	1.08Å	1.08Å
C10	H2	sing	1.09Å	1.10Å
C10	H3	sing	1.09Å	1.10Å
C2	H4	sing	1.08Å	1.08Å
C4	H5	sing	1.08Å	1.08Å
C8	H6	sing	1.08Å	1.08Å
O2	H7	sing	0.97Å	0.95Å
O3	H8	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	C6	119.9°	119.8°
C1	C2	C3	121.0°	120.4°
C2	C1	H1	120.0°	120.1°
C1	C2	H4	119.5°	119.8°
C1	C6	C5	119.4°	120.0°
C1	C6	C9	123.5°	121.0°
C6	C1	H1	120.0°	120.1°
C2	C3	C4	119.2°	120.5°
C2	C3	O2	119.8°	119.7°
C3	C2	H4	119.5°	119.8°
C4	C3	O2	121.0°	119.7°
C3	C4	C5	119.8°	119.8°
C3	C4	H5	120.1°	120.1°
C3	O2	H7	109.5°	113.9°
C4	C5	C6	120.6°	119.4°
C4	C5	O1	118.0°	120.7°
C5	C4	H5	120.1°	120.1°
C6	C5	O1	121.4°	119.9°
C5	C6	C9	117.1°	119.0°
C5	O1	C7	121.8°	121.5°
C6	C9	C8	119.9°	118.2°
C6	C9	C10	120.4°	120.9°
O1	C7	C8	120.0°	121.7°
O1	C7	O4	120.0°	119.1°
C8	C7	O4	120.0°	119.2°
C7	C8	C9	119.8°	119.8°
C7	C8	H6	120.1°	120.1°
C8	C9	C10	119.7°	120.9°
C9	C8	H6	120.1°	120.1°
C9	C10	O3	109.4°	109.5°
C9	C10	H2	109.5°	109.5°
C9	C10	H3	109.5°	109.5°
O3	C10	H2	109.5°	109.5°
O3	C10	H3	109.5°	109.4°
C10	O3	H8	109.5°	114.0°
H2	C10	H3	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	C6	H1	180.0°	179.8°
C1	C2	C3	H4	180.0°	180.0°
C1	C2	C3	C4	0.2°	0.1°
C1	C2	C3	O2	179.8°	180.0°
C2	C1	C6	C5	0.0°	0.1°
C2	C1	C6	C9	179.9°	180.0°
C6	C1	C2	C3	0.1°	0.1°
C1	C6	C5	C4	0.1°	0.0°
C1	C6	C5	C9	179.9°	180.0°
C1	C6	C5	O1	180.0°	180.0°
C1	C6	C9	C8	180.0°	180.0°
C1	C6	C9	C10	0.1°	0.0°
C6	C1	C2	H4	179.9°	180.0°
C2	C3	C4	O2	179.9°	179.9°
C2	C3	C4	C5	0.1°	0.0°
C3	C2	C1	H1	179.9°	179.7°
C2	C3	C4	H5	179.9°	179.9°
C2	C3	O2	H7	180.0°	90.0°
C3	C4	C5	H5	180.0°	180.0°
C3	C4	C5	C6	0.0°	0.0°
C3	C4	C5	O1	179.9°	180.0°
C4	C3	C2	H4	179.8°	180.0°
C4	C3	O2	H7	0.1°	90.1°
O2	C3	C4	C5	179.9°	179.9°
O2	C3	C2	H4	0.2°	0.1°
O2	C3	C4	H5	0.2°	0.0°
C4	C5	C6	O1	179.9°	180.0°
C4	C5	C6	C9	180.0°	180.0°
C4	C5	O1	C7	179.9°	180.0°
C6	C5	O1	C7	0.2°	0.0°
C5	C6	C9	C8	0.1°	0.0°
C5	C6	C9	C10	179.8°	180.0°
C5	C6	C1	H1	180.0°	179.7°
C6	C5	C4	H5	180.0°	179.9°
O1	C5	C6	C9	0.1°	0.0°
C5	O1	C7	C8	0.2°	0.0°
C5	O1	C7	O4	180.0°	180.0°
O1	C5	C4	H5	0.1°	0.0°
C6	C9	C8	C7	0.1°	0.0°
C6	C9	C8	C10	179.9°	180.0°
C6	C9	C10	O3	175.4°	180.0°
C9	C6	C1	H1	0.1°	0.2°
C6	C9	C10	H2	64.7°	60.0°
C6	C9	C10	H3	55.4°	60.0°
C6	C9	C8	H6	179.9°	180.0°
O1	C7	C8	O4	179.8°	179.9°
O1	C7	C8	C9	0.1°	0.0°
O1	C7	C8	H6	179.8°	180.0°
C7	C8	C9	H6	180.0°	180.0°
C7	C8	C9	C10	179.8°	180.0°
O4	C7	C8	C9	180.0°	180.0°
O4	C7	C8	H6	0.0°	0.1°
C8	C9	C10	O3	4.5°	0.0°
C8	C9	C10	H2	115.5°	120.0°
C8	C9	C10	H3	124.5°	120.0°
C9	C10	O3	H2	120.0°	120.0°
C9	C10	O3	H3	120.0°	120.0°
C9	C10	H2	H3	120.1°	120.0°
C10	C9	C8	H6	0.2°	0.0°
C9	C10	O3	H8	180.0°	180.0°
O3	C10	H2	H3	120.0°	120.0°
H1	C1	C2	H4	0.1°	0.3°
H2	C10	O3	H8	60.0°	60.0°
H3	C10	O3	H8	60.0°	60.0°

250835

PDB entries from 2026-03-18

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