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Summary Geometry Related PDB entries

A1L0T

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.53Å	1.51Å
O3	P1	doub	1.48Å	1.53Å
C2	C4	sing	1.53Å	1.51Å
C2	C3	sing	1.53Å	1.53Å
C4	P1	sing	1.82Å	1.79Å
P1	O1	sing	1.61Å	1.54Å
P1	O2	sing	1.61Å	1.52Å
C1	H1	sing	1.09Å	1.10Å
C1	H2	sing	1.09Å	1.10Å
C1	H3	sing	1.09Å	1.10Å
C2	H4	sing	1.09Å	1.10Å
C3	H5	sing	1.09Å	1.10Å
C3	H6	sing	1.09Å	1.10Å
C3	H7	sing	1.09Å	1.10Å
C4	H8	sing	1.09Å	1.10Å
C4	H9	sing	1.09Å	1.10Å
O1	H10	sing	0.97Å	0.95Å
O2	H11	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	C2	C4	106.1°	109.5°
C1	C2	C3	111.0°	109.5°
C2	C1	H1	109.5°	109.4°
C2	C1	H2	109.5°	109.5°
C2	C1	H3	109.5°	109.4°
C1	C2	H4	109.5°	109.4°
O3	P1	C4	109.8°	109.5°
O3	P1	O1	112.7°	109.5°
O3	P1	O2	109.9°	109.5°
C4	C2	C3	111.7°	109.4°
C2	C4	P1	112.6°	109.4°
C4	C2	H4	109.4°	109.5°
C2	C4	H8	108.7°	109.5°
C2	C4	H9	108.7°	109.5°
C3	C2	H4	109.2°	109.5°
C2	C3	H5	109.5°	109.4°
C2	C3	H6	109.5°	109.4°
C2	C3	H7	109.4°	109.5°
C4	P1	O1	104.8°	109.5°
C4	P1	O2	105.7°	109.5°
P1	C4	H8	108.7°	109.4°
P1	C4	H9	108.7°	109.4°
O1	P1	O2	113.5°	109.5°
P1	O1	H10	109.5°	114.0°
P1	O2	H11	109.5°	114.0°
H1	C1	H2	109.5°	109.5°
H1	C1	H3	109.4°	109.5°
H2	C1	H3	109.5°	109.4°
H5	C3	H6	109.4°	109.5°
H5	C3	H7	109.5°	109.5°
H6	C3	H7	109.5°	109.5°
H8	C4	H9	109.5°	109.6°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C1	C2	C4	C3	121.0°	120.0°
C1	C2	C4	H4	118.0°	120.0°
C1	C2	C3	H4	120.7°	120.0°
C1	C2	C4	P1	88.2°	75.0°
C2	C1	H1	H2	120.0°	120.0°
C2	C1	H1	H3	120.0°	120.0°
C2	C1	H2	H3	120.0°	120.0°
C1	C2	C3	H5	180.0°	60.0°
C1	C2	C3	H6	60.0°	180.0°
C1	C2	C3	H7	60.0°	60.0°
C1	C2	C4	H8	151.3°	165.1°
C1	C2	C4	H9	32.3°	44.9°
O3	P1	C4	C2	47.8°	55.0°
O3	P1	C4	O1	121.3°	120.0°
O3	P1	C4	O2	118.5°	120.0°
O3	P1	O1	O2	125.8°	120.0°
O3	P1	C4	H8	168.2°	175.0°
O3	P1	C4	H9	72.7°	65.0°
O3	P1	O1	H10	0.0°	180.0°
O3	P1	O2	H11	0.0°	60.0°
C4	C2	C3	H4	121.1°	120.1°
C2	C4	P1	H8	120.5°	120.0°
C2	C4	P1	H9	120.5°	120.0°
C2	C4	P1	O1	169.1°	65.0°
C2	C4	P1	O2	70.8°	175.0°
C4	C2	C1	H1	180.0°	180.0°
C4	C2	C1	H2	60.0°	60.0°
C4	C2	C1	H3	60.0°	59.9°
C4	C2	C3	H5	61.9°	60.0°
C4	C2	C3	H6	178.2°	60.0°
C4	C2	C3	H7	58.2°	180.0°
C2	C4	H8	H9	118.5°	120.1°
C3	C2	C4	P1	150.7°	165.0°
C3	C2	C1	H1	58.5°	60.0°
C3	C2	C1	H2	178.5°	180.0°
C3	C2	C1	H3	61.5°	60.0°
C2	C3	H5	H6	120.0°	120.0°
C2	C3	H5	H7	120.0°	120.0°
C2	C3	H6	H7	120.0°	120.0°
C3	C2	C4	H8	30.2°	45.1°
C3	C2	C4	H9	88.8°	75.0°
C4	P1	O1	O2	114.8°	120.0°
P1	C4	C2	H4	29.7°	45.0°
P1	C4	H8	H9	118.6°	120.0°
C4	P1	O1	H10	119.4°	60.0°
C4	P1	O2	H11	118.4°	180.0°
O1	P1	C4	H8	70.5°	55.0°
O1	P1	C4	H9	48.6°	175.0°
O1	P1	O2	H11	127.3°	60.0°
O2	P1	C4	H8	49.7°	65.0°
O2	P1	C4	H9	168.7°	55.1°
O2	P1	O1	H10	125.8°	60.0°
H1	C1	H2	H3	120.0°	120.1°
H1	C1	C2	H4	62.1°	60.0°
H2	C1	C2	H4	57.9°	60.1°
H3	C1	C2	H4	177.9°	180.0°
H4	C2	C3	H5	59.2°	180.0°
H4	C2	C3	H6	60.7°	60.0°
H4	C2	C3	H7	179.3°	60.0°
H4	C2	C4	H8	90.7°	74.9°
H4	C2	C4	H9	150.2°	164.9°
H5	C3	H6	H7	120.0°	120.1°

248335

PDB entries from 2026-01-28

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