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A1JIX

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C5sing1.51Å1.50Å
C5C3doub1.35Å1.38ÅAromatic
C3O1sing1.34Å1.38ÅAromatic
N1O1sing1.21Å1.32ÅAromatic
C6N1doub1.30Å1.36ÅAromatic
C6CABsing1.51Å1.50Å
CABCAAsing1.53Å1.55Å
CAAC8sing1.53Å1.53Å
C8CACsing1.53Å1.54Å
CACC9sing1.53Å1.53Å
C9C10sing1.53Å1.54Å
C10C11sing1.53Å1.55Å
CAAO3'sing1.43Å1.44Å
CABS1sing1.81Å1.76Å
C1'S1sing1.81Å1.77Å
C1'C2'sing1.53Å1.54Å
C2'C14sing1.53Å1.53Å
C14N2sing1.46Å1.49Å
N2NAAsing1.29Å1.33ÅAromatic
NAAN3doub1.29Å1.31ÅAromatic
C15N3sing1.34Å1.35ÅAromatic
C15C16sing1.48Å1.47Å
C16C17doub1.39Å1.39ÅAromatic
C17C18sing1.38Å1.37ÅAromatic
C18F1sing1.35Å1.37Å
C16C19sing1.39Å1.38ÅAromatic
C19C20doub1.38Å1.36ÅAromatic
C20F2sing1.35Å1.38Å
C20C21sing1.39Å1.37ÅAromatic
C21F3sing1.35Å1.37Å
C15C22doub1.36Å1.37ÅAromatic
C2'O2'sing1.43Å1.42Å
C23O2'sing1.43Å1.43Å
C1'O4'sing1.43Å1.45Å
C4'O4'sing1.43Å1.44Å
C4'C5'sing1.53Å1.52Å
C5'O5'sing1.43Å1.43Å
C4'C26sing1.53Å1.53Å
C26OP3sing1.43Å1.45Å
C6C5sing1.41Å1.38ÅAromatic
C11CAAsing1.53Å1.53Å
C26C14sing1.53Å1.53Å
C22N2sing1.35Å1.33ÅAromatic
C21C18doub1.39Å1.37ÅAromatic
C8H6sing1.09Å1.10Å
C8H7sing1.09Å1.10Å
C10H12sing1.09Å1.10Å
C10H13sing1.09Å1.10Å
C17H20sing1.08Å1.08Å
C22H22sing1.08Å1.08Å
C26H30sing1.09Å1.10Å
C1H1sing1.09Å1.10Å
C1H2sing1.09Å1.10Å
C1H3sing1.09Å1.10Å
C3H4sing1.08Å1.08Å
CABH5sing1.09Å1.10Å
CACH8sing1.09Å1.10Å
CACH9sing1.09Å1.10Å
C9H10sing1.09Å1.10Å
C9H11sing1.09Å1.10Å
C11H14sing1.09Å1.10Å
C11H15sing1.09Å1.10Å
O3'H16sing0.97Å0.95Å
C1'H17sing1.09Å1.10Å
C2'H18sing1.09Å1.10Å
C14H19sing1.09Å1.10Å
C19H21sing1.08Å1.08Å
C23H23sing1.09Å1.10Å
C23H24sing1.09Å1.10Å
C23H25sing1.09Å1.10Å
C4'H26sing1.09Å1.10Å
C5'H27sing1.09Å1.10Å
C5'H28sing1.09Å1.10Å
O5'H29sing0.97Å0.95Å
OP3H31sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C1C5C3118.6°128.0°
C1C5C6130.9°128.0°
C5C1H1109.5°109.4°
C5C1H2109.5°109.5°
C5C1H3109.4°109.5°
C5C3O1102.0°106.5°
C3C5C6110.5°104.0°
C5C3H4129.0°126.8°
C3O1N1113.6°111.5°
O1C3H4129.0°126.8°
O1N1C6106.8°111.6°
N1C6CAB129.2°126.8°
N1C6C5107.1°106.4°
C6CABCAA113.7°109.5°
C6CABS1111.5°109.5°
CABC6C5123.6°126.8°
C6CABH5107.2°109.5°
CABCAAC8112.4°109.5°
CABCAAO3'106.8°109.5°
CAACABS1112.5°109.5°
CABCAAC11109.3°109.5°
CAACABH5106.6°109.4°
CAAC8CAC112.2°109.5°
C8CAAO3'107.8°109.5°
C8CAAC11111.6°109.4°
CAAC8H6108.8°109.5°
CAAC8H7108.8°109.5°
C8CACC9111.6°109.5°
CACC8H6108.8°109.4°
CACC8H7108.8°109.5°
C8CACH8108.9°109.5°
C8CACH9108.9°109.5°
CACC9C10112.8°109.5°
C9CACH8108.9°109.5°
C9CACH9108.9°109.4°
CACC9H10108.6°109.5°
CACC9H11108.6°109.5°
C9C10C11111.9°109.5°
C9C10H12108.9°109.5°
C9C10H13108.9°109.5°
C10C9H10108.6°109.4°
C10C9H11108.6°109.4°
C10C11CAA112.4°109.5°
C11C10H12108.9°109.4°
C11C10H13108.9°109.5°
C10C11H14108.7°109.5°
C10C11H15108.7°109.4°
O3'CAAC11108.7°109.5°
CAAO3'H16109.5°114.0°
CABS1C1'100.8°103.0°
S1CABH5104.6°109.5°
S1C1'C2'111.3°109.5°
S1C1'O4'108.0°109.5°
S1C1'H17107.1°109.5°
C1'C2'C14109.7°109.2°
C1'C2'O2'110.0°109.5°
C2'C1'O4'109.3°109.4°
C2'C1'H17109.9°109.5°
C1'C2'H18109.2°109.5°
C2'C14N2111.2°109.6°
C14C2'O2'107.6°109.5°
C2'C14C26111.0°109.0°
C14C2'H18109.4°109.6°
C2'C14H19107.9°109.6°
C14N2NAA115.3°125.8°
N2C14C26110.5°109.5°
C14N2C22132.5°125.7°
N2C14H19108.4°109.6°
N2NAAN3106.9°110.5°
NAAN2C22111.8°108.5°
NAAN3C15108.6°108.8°
N3C15C16124.4°126.9°
N3C15C22108.2°106.2°
C15C16C17118.7°120.1°
C15C16C19119.7°120.1°
C16C15C22127.3°126.9°
C16C17C18118.6°119.9°
C17C16C19121.4°119.9°
C16C17H20120.7°120.0°
C17C18F1121.3°119.9°
C17C18C21120.4°120.1°
C18C17H20120.7°120.1°
F1C18C21118.3°120.0°
C16C19C20118.1°119.9°
C16C19H21121.0°120.1°
C19C20F2120.6°119.9°
C19C20C21121.6°120.1°
C20C19H21121.0°120.0°
F2C20C21117.7°120.0°
C20C21F3119.0°120.0°
C20C21C18119.9°120.2°
F3C21C18121.1°119.9°
C15C22N2104.3°106.0°
C15C22H22127.9°127.0°
C2'O2'C23114.2°113.9°
O2'C2'H18110.8°109.6°
O2'C23H23109.5°109.5°
O2'C23H24109.4°109.5°
O2'C23H25109.5°109.5°
C1'O4'C4'113.5°114.1°
O4'C1'H17111.1°109.5°
O4'C4'C5'107.4°109.5°
O4'C4'C26107.5°109.4°
O4'C4'H26111.2°109.5°
C4'C5'O5'109.4°109.5°
C5'C4'C26110.6°109.4°
C5'C4'H26110.1°109.5°
C4'C5'H27109.5°109.4°
C4'C5'H28109.5°109.5°
O5'C5'H27109.5°109.5°
O5'C5'H28109.5°109.5°
C5'O5'H29109.5°114.0°
C4'C26OP3110.3°109.5°
C4'C26C14108.9°109.1°
C4'C26H30109.3°109.6°
C26C4'H26110.0°109.5°
OP3C26C14108.6°109.5°
OP3C26H30110.4°109.6°
C26OP3H31109.5°114.0°
CAAC11H14108.7°109.4°
CAAC11H15108.7°109.5°
C14C26H30109.2°109.6°
C26C14H19107.8°109.5°
N2C22H22127.9°127.0°
H6C8H7109.5°109.4°
H12C10H13109.5°109.4°
H1C1H2109.4°109.5°
H1C1H3109.5°109.5°
H2C1H3109.5°109.5°
H8CACH9109.5°109.5°
H10C9H11109.5°109.5°
H14C11H15109.5°109.5°
H23C23H24109.5°109.5°
H23C23H25109.5°109.4°
H24C23H25109.4°109.5°
H27C5'H28109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C1C5C3C6178.8°180.0°
C1C5C3O1178.5°180.0°
C1C5C6N1178.4°180.0°
C1C5C6CAB1.5°0.0°
C5C1H1H2120.0°120.0°
C5C1H1H3120.0°120.0°
C5C1H2H3120.0°120.0°
C1C5C3H41.5°0.0°
C5C3O1H4180.0°180.0°
C5C3O1N10.3°0.1°
C3C5C6N10.2°0.0°
C3C5C6CAB179.8°179.9°
C3C5C1H189.4°90.0°
C3C5C1H2150.6°150.0°
C3C5C1H330.5°30.0°
C3O1N1C60.2°0.1°
O1C3C5C60.3°0.1°
O1N1C6CAB180.0°180.0°
O1N1C6C50.0°0.0°
N1O1C3H4179.7°180.0°
N1C6CABC5179.9°180.0°
N1C6CABCAA64.6°75.1°
N1C6CABS164.0°45.0°
N1C6CABH5177.9°165.0°
C6CABCAAS1128.0°120.1°
C6CABCAAH5117.9°120.0°
C6CABCAAC875.7°175.0°
C6CABCAAO3'166.2°65.0°
C6CABS1H5115.5°120.1°
C6CABS1C1'85.8°65.0°
C6CABCAAC1148.8°55.1°
CABCAAC8O3'117.5°120.0°
CABCAAC8C11123.2°120.0°
CABCAAC8CAC177.8°180.0°
CABCAAC11C10178.3°180.0°
CABCAAO3'C11117.8°120.0°
CAACABS1H5115.3°119.9°
CAACABS1C1'145.0°175.0°
CAACABC6C5115.5°105.0°
CABCAAC8H661.8°60.0°
CABCAAC8H757.4°60.0°
CABCAAC11H1461.2°60.0°
CABCAAC11H1557.9°60.0°
CABCAAO3'H16180.0°180.0°
CAAC8CACH6120.4°120.0°
CAAC8CACH7120.4°120.1°
CAAC8CACC954.1°60.0°
C8CAAC11C1053.3°60.0°
C8CAAO3'C11121.2°120.0°
C8CAACABS152.3°54.9°
CAAC8H6H7118.7°120.0°
C8CAACABH5166.4°65.0°
CAAC8CACH866.2°59.9°
CAAC8CACH9174.4°180.0°
C8CAAC11H14173.8°180.0°
C8CAAC11H1567.1°60.0°
C8CAAO3'H1658.9°60.0°
C8CACC9H8120.3°120.0°
C8CACC9H9120.3°120.0°
C8CACC9C1052.6°60.0°
CACC8CAAO3'64.7°60.0°
CACC8CAAC1154.6°60.0°
CACC8H6H7118.8°119.9°
C8CACH8H9119.0°120.1°
C8CACC9H10173.1°60.0°
C8CACC9H1167.9°179.9°
CACC9C10H10120.5°120.0°
CACC9C10H11120.5°120.0°
CACC9C10C1151.3°60.0°
C9CACC8H6174.5°179.9°
C9CACC8H766.3°60.0°
CACC9C10H1269.0°60.0°
CACC9C10H13171.7°180.0°
C9CACH8H9119.0°120.0°
CACC9H10H11118.5°120.1°
C9C10C11H12120.4°120.0°
C9C10C11H13120.3°120.1°
C9C10C11CAA51.6°60.0°
C9C10H12H13118.9°120.1°
C10C9CACH867.7°60.0°
C10C9CACH9172.9°180.0°
C10C9H10H11118.5°120.0°
C9C10C11H14172.0°180.0°
C9C10C11H1568.8°60.0°
C10C11CAAO3'65.4°60.0°
C10C11CAAH14120.4°120.0°
C10C11CAAH15120.5°120.0°
C11C10H12H13118.9°120.0°
C11C10C9H10171.8°60.0°
C11C10C9H1169.2°180.0°
C10C11H14H15118.7°120.0°
O3'CAACABS165.8°175.0°
O3'CAAC8H655.7°60.0°
O3'CAAC8H7174.9°180.0°
O3'CAACABH548.3°55.0°
O3'CAAC11H1455.0°60.0°
O3'CAAC11H15174.1°180.0°
CABS1C1'C2'178.4°175.0°
CABS1C1'O4'58.4°65.1°
S1CABC6C5115.9°135.0°
S1CABCAAC11176.8°65.0°
CABS1C1'H1761.4°55.0°
S1C1'C2'O4'119.3°120.0°
S1C1'C2'H17118.5°120.0°
S1C1'C2'C14173.4°177.6°
S1C1'C2'O2'68.4°62.5°
S1C1'O4'H17117.3°120.0°
S1C1'O4'C4'176.6°178.8°
C1'S1CABH529.7°55.1°
S1C1'C2'H1853.5°57.7°
C1'C2'C14O2'119.7°119.9°
C1'C2'C14H18119.8°119.9°
C1'C2'C14N2176.8°176.8°
C1'C2'O2'H18120.9°120.1°
C1'C2'O2'C23111.4°90.0°
C2'C1'O4'H17121.5°120.0°
C2'C1'O4'C4'62.1°61.2°
C1'C2'C14C2653.4°57.0°
C1'C2'C14H1964.5°62.9°
C2'C14N2C26123.7°119.6°
C2'C14N2H19118.4°120.3°
C2'C14N2NAA125.7°95.5°
C14C2'O2'H18119.6°120.2°
C14C2'O2'C23129.1°150.3°
C14C2'C1'O4'54.1°57.6°
C2'C14C26C4'56.7°57.0°
C2'C14C26OP363.5°62.9°
C2'C14C26H19117.9°119.9°
C2'C14N2C2261.6°84.5°
C2'C14C26H30176.0°177.0°
C14C2'C1'H1768.1°62.4°
C14N2NAAC22174.2°180.0°
C14N2NAAN3177.9°180.0°
C14N2C22C15176.4°180.0°
N2C14C2'O2'63.5°63.3°
N2C14C26C4'179.6°176.9°
N2C14C26OP360.3°57.0°
N2C14C26H19118.3°120.2°
C14N2C22H223.6°0.0°
N2C14C26H3060.2°63.2°
N2C14C2'H1857.0°56.9°
N2NAAN3C152.3°0.0°
NAAN2C22C153.4°0.0°
NAAN2C14C26110.6°145.0°
NAAN2C22H22176.6°180.0°
NAAN2C14H197.3°24.8°
NAAN3C15C16177.4°179.9°
NAAN3C15C220.2°0.0°
N3NAAN2C223.7°0.0°
N3C15C16C22177.1°179.9°
N3C15C16C17161.2°0.0°
N3C15C16C1914.0°180.0°
N3C15C22N21.9°0.0°
N3C15C22H22178.1°180.0°
C15C16C17C19175.1°180.0°
C15C16C17C18178.0°180.0°
C15C16C19C20175.3°180.0°
C16C15C22N2179.4°180.0°
C15C16C17H202.0°0.3°
C16C15C22H220.6°0.0°
C15C16C19H214.7°0.0°
C16C17C18H20180.0°179.7°
C16C17C18F1177.8°179.7°
C17C16C19C200.3°0.0°
C17C16C15C2215.9°180.0°
C16C17C18C212.3°0.3°
C17C16C19H21179.7°180.0°
C17C18F1C21179.9°180.0°
C18C17C16C192.9°0.0°
C17C18C21C200.8°0.6°
C17C18C21F3179.5°179.5°
F1C18C21C20179.0°179.4°
F1C18C21F30.7°0.5°
F1C18C17H202.2°0.1°
C16C19C20H21180.0°180.0°
C16C19C20F2179.9°179.7°
C16C19C20C213.0°0.3°
C19C16C15C22168.9°0.0°
C19C16C17H20177.1°179.7°
C19C20F2C21177.1°179.5°
C19C20C21F3176.7°179.5°
C19C20C21C183.6°0.6°
F2C20C21F30.4°0.0°
F2C20C21C18179.3°180.0°
F2C20C19H210.1°0.3°
C20C21F3C18179.7°179.9°
C21C20C19H21177.0°179.7°
C15C22N2H22180.0°180.0°
O2'C2'C1'O4'172.3°177.5°
O2'C2'C14C26173.1°176.9°
O2'C2'C1'H1750.1°57.5°
O2'C2'C14H1955.1°57.0°
C2'O2'C23H23180.0°180.0°
C2'O2'C23H2460.0°60.0°
C2'O2'C23H2560.0°60.0°
C23O2'C2'H189.5°30.1°
O2'C23H23H24120.0°120.0°
O2'C23H23H25120.0°120.0°
O2'C23H24H25120.0°120.0°
C1'O4'C4'C5'176.0°178.9°
C1'O4'C4'C2665.0°61.2°
O4'C1'C2'H1865.8°62.3°
C1'O4'C4'H2655.5°58.8°
O4'C4'C5'C26117.0°119.9°
O4'C4'C5'H26121.2°120.1°
O4'C4'C5'O5'62.7°65.0°
O4'C4'C26H26121.2°120.0°
O4'C4'C26OP359.1°62.2°
O4'C4'C26C1460.1°57.6°
O4'C4'C26H30179.4°177.6°
C4'O4'C1'H1759.3°58.8°
O4'C4'C5'H27177.4°175.0°
O4'C4'C5'H2857.3°55.0°
C4'C5'O5'H27120.0°120.0°
C4'C5'O5'H28120.0°120.0°
C5'C4'C26H26121.8°120.1°
C5'C4'C26OP357.9°57.7°
C5'C4'C26C14177.1°177.5°
C5'C4'C26H3063.6°62.5°
C4'C5'H27H28120.1°120.0°
C4'C5'O5'H29180.0°180.0°
O5'C5'C4'C26179.7°175.1°
O5'C5'C4'H2658.6°55.0°
O5'C5'H27H28120.0°120.0°
C4'C26OP3C14119.3°119.6°
C4'C26OP3H30120.9°120.2°
C4'C26C14H30119.3°120.0°
C4'C26C14H1961.3°62.9°
C26C4'C5'H2760.3°55.1°
C26C4'C5'H2859.7°64.9°
C4'C26OP3H31180.0°60.4°
OP3C26C14H30120.5°120.2°
OP3C26C14H19178.5°177.3°
OP3C26C4'H26179.7°177.8°
C6C5C1H189.1°90.0°
C6C5C1H230.9°30.0°
C6C5C1H3150.9°150.0°
C6C5C3H4179.7°180.0°
C5C6CABH52.0°15.0°
C11CAAC8H6175.0°180.0°
C11CAAC8H765.8°60.0°
CAAC11C10H1268.8°60.0°
CAAC11C10H13172.0°179.9°
C11CAACABH569.1°175.0°
CAAC11H14H15118.6°120.0°
C11CAAO3'H1662.2°60.0°
C26C14N2C2262.1°35.1°
C26C14C2'H1866.4°62.9°
C14C26C4'H2661.2°62.4°
C14C26OP3H3160.7°180.0°
C22N2C14H19179.9°155.2°
C21C18C17H20177.7°180.0°
H6C8CACH854.2°60.1°
H6C8CACH965.2°60.0°
H7C8CACH8173.4°180.0°
H7C8CACH954.0°59.9°
H12C10C9H1051.5°180.0°
H12C10C9H11170.5°60.0°
H12C10C11H1451.7°60.0°
H12C10C11H15170.8°180.0°
H13C10C9H1067.8°60.0°
H13C10C9H1151.2°60.0°
H13C10C11H1467.6°60.0°
H13C10C11H1551.5°60.0°
H30C26C14H1958.0°57.1°
H30C26C4'H2658.1°57.6°
H30C26OP3H3159.1°59.8°
H1C1H2H3120.0°120.0°
H8CACC9H1052.8°179.9°
H8CACC9H11171.8°60.0°
H9CACC9H1066.6°60.1°
H9CACC9H1152.4°60.0°
H17C1'C2'H18172.0°177.7°
H18C2'C14H19175.6°177.2°
H23C23H24H25120.0°120.0°
H26C4'C5'H2761.4°64.9°
H26C4'C5'H28178.6°175.0°
H27C5'O5'H2960.0°60.0°
H28C5'O5'H2960.0°60.0°

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PDB entries from 2026-07-22

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