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A1JIV

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C5CAAsing1.51Å1.51Å
CAAC3doub1.38Å1.39ÅAromatic
C3C4sing1.51Å1.50Å
C4C2'sing1.53Å1.56Å
C2'C6sing1.53Å1.53Å
C6C7sing1.53Å1.55Å
C7O3'sing1.43Å1.44Å
CABO3'sing1.43Å1.44Å
CABC9sing1.53Å1.53Å
C2'O2'sing1.43Å1.44Å
C4S1sing1.81Å1.78Å
C10S1sing1.81Å1.76Å
C10C11sing1.53Å1.54Å
C11C8sing1.53Å1.53Å
C8N9sing1.47Å1.48Å
N9N2sing1.29Å1.32ÅAromatic
N2N1doub1.29Å1.32ÅAromatic
C2N1sing1.35Å1.34ÅAromatic
C2C14sing1.48Å1.48Å
C14C15doub1.39Å1.38ÅAromatic
C15C16sing1.38Å1.37ÅAromatic
C16F1sing1.35Å1.38Å
C14C17sing1.39Å1.38ÅAromatic
C17C18doub1.38Å1.37ÅAromatic
C18F2sing1.35Å1.36Å
C18C19sing1.39Å1.37ÅAromatic
C19F3sing1.35Å1.38Å
C2C20doub1.37Å1.37ÅAromatic
C11O6sing1.43Å1.44Å
C10O5'sing1.43Å1.43Å
C5'O5'sing1.43Å1.45Å
C5'C4'sing1.53Å1.52Å
C4'O4'sing1.43Å1.44Å
C5'C23sing1.53Å1.53Å
C23OP3sing1.43Å1.44Å
C3C24sing1.38Å1.40ÅAromatic
C24C25doub1.38Å1.41ÅAromatic
C25C26sing1.38Å1.38ÅAromatic
C26C27doub1.38Å1.39ÅAromatic
C27CAAsing1.38Å1.40ÅAromatic
C9C2'sing1.53Å1.54Å
C23C8sing1.53Å1.53Å
C20N9sing1.35Å1.34ÅAromatic
C19C16doub1.39Å1.38ÅAromatic
C4H4sing1.09Å1.10Å
C5H1sing1.09Å1.10Å
C5H2sing1.09Å1.10Å
C5H3sing1.09Å1.10Å
C6H5sing1.09Å1.10Å
C6H6sing1.09Å1.10Å
C7H7sing1.09Å1.10Å
C7H8sing1.09Å1.10Å
C8H16sing1.09Å1.10Å
C10H14sing1.09Å1.10Å
C15H17sing1.08Å1.08Å
C17H18sing1.08Å1.08Å
C20H19sing1.08Å1.08Å
C24H27sing1.08Å1.08Å
C26H29sing1.08Å1.08Å
CABH10sing1.09Å1.10Å
CABH9sing1.09Å1.10Å
C9H11sing1.09Å1.10Å
C9H12sing1.09Å1.10Å
O2'H13sing0.97Å0.95Å
C11H15sing1.09Å1.10Å
O6H20sing0.97Å0.95Å
C5'H21sing1.09Å1.10Å
C4'H22sing1.09Å1.10Å
C4'H23sing1.09Å1.10Å
O4'H24sing0.97Å0.95Å
C23H25sing1.09Å1.10Å
OP3H26sing0.97Å0.95Å
C25H28sing1.08Å1.08Å
C27H30sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C5CAAC3121.3°120.0°
C5CAAC27118.5°120.0°
CAAC5H1109.5°109.5°
CAAC5H2109.5°109.5°
CAAC5H3109.5°109.5°
CAAC3C4119.6°120.0°
CAAC3C24119.7°120.0°
C3CAAC27120.1°120.0°
C3C4C2'114.4°109.5°
C3C4S1113.2°109.5°
C4C3C24120.7°120.0°
C3C4H4106.3°109.4°
C4C2'C6111.1°109.5°
C4C2'O2'107.7°109.5°
C2'C4S1112.4°109.5°
C4C2'C9111.8°109.6°
C2'C4H4105.7°109.5°
C2'C6C7112.1°109.2°
C6C2'O2'107.7°109.5°
C6C2'C9110.5°109.1°
C2'C6H5108.8°109.5°
C2'C6H6108.8°109.6°
C6C7O3'109.8°109.4°
C7C6H5108.8°109.5°
C7C6H6108.8°109.5°
C6C7H7109.4°109.5°
C6C7H8109.4°109.5°
C7O3'CAB117.1°114.1°
O3'C7H7109.4°109.5°
O3'C7H8109.4°109.4°
O3'CABC9110.0°109.4°
O3'CABH10109.3°109.5°
O3'CABH9109.3°109.5°
CABC9C2'111.2°109.2°
C9CABH10109.3°109.5°
C9CABH9109.3°109.5°
CABC9H11109.0°109.5°
CABC9H12109.0°109.5°
O2'C2'C9107.9°109.6°
C2'O2'H13109.5°114.0°
C4S1C10100.9°103.0°
S1C4H4103.7°109.5°
S1C10C11110.8°109.5°
S1C10O5'106.5°109.5°
S1C10H14107.5°109.4°
C10C11C8108.9°109.2°
C10C11O6109.5°109.5°
C11C10O5'110.1°109.4°
C11C10H14110.2°109.5°
C10C11H15108.9°109.5°
C11C8N9110.1°109.6°
C8C11O6110.2°109.5°
C11C8C23111.0°109.1°
C11C8H16108.3°109.5°
C8C11H15109.0°109.5°
C8N9N2115.3°125.7°
N9C8C23110.2°109.5°
C8N9C20132.6°125.7°
N9C8H16108.9°109.5°
N9N2N1107.2°110.5°
N2N9C20111.7°108.5°
N2N1C2108.2°108.8°
N1C2C14124.2°126.9°
N1C2C20109.0°106.2°
C2C14C15118.4°120.0°
C2C14C17119.1°120.1°
C14C2C20126.5°126.9°
C14C15C16118.2°119.9°
C15C14C17122.3°119.8°
C14C15H17120.9°120.1°
C15C16F1120.3°120.0°
C15C16C19120.8°120.1°
C16C15H17120.9°120.0°
F1C16C19118.8°119.9°
C14C17C18117.9°120.0°
C14C17H18121.1°120.0°
C17C18F2120.7°120.0°
C17C18C19121.0°120.1°
C18C17H18121.1°120.0°
F2C18C19118.3°120.0°
C18C19F3119.8°120.0°
C18C19C16119.7°120.1°
F3C19C16120.5°119.9°
C2C20N9103.6°106.0°
C2C20H19128.2°127.0°
O6C11H15110.2°109.5°
C11O6H20109.5°114.0°
C10O5'C5'113.8°114.1°
O5'C10H14111.6°109.5°
O5'C5'C4'109.3°109.5°
O5'C5'C23107.7°109.4°
O5'C5'H21110.2°109.5°
C5'C4'O4'107.2°109.4°
C4'C5'C23111.3°109.4°
C4'C5'H21109.2°109.5°
C5'C4'H22110.0°109.5°
C5'C4'H23110.0°109.5°
O4'C4'H22110.0°109.5°
O4'C4'H23110.1°109.5°
C4'O4'H24109.5°114.0°
C5'C23OP3108.8°109.5°
C5'C23C8110.0°109.1°
C23C5'H21109.1°109.5°
C5'C23H25108.9°109.5°
OP3C23C8110.2°109.5°
OP3C23H25110.1°109.6°
C23OP3H26109.5°114.0°
C3C24C25120.1°120.1°
C3C24H27120.0°120.0°
C24C25C26119.7°120.0°
C25C24H27120.0°119.9°
C24C25H28120.1°120.1°
C25C26C27120.5°120.0°
C25C26H29119.8°120.0°
C26C25H28120.1°119.9°
C26C27CAA119.8°120.0°
C27C26H29119.7°120.0°
C26C27H30120.1°120.0°
CAAC27H30120.1°120.0°
C2'C9H11109.1°109.5°
C2'C9H12109.0°109.5°
C23C8H16108.3°109.5°
C8C23H25108.9°109.5°
N9C20H19128.2°127.0°
H1C5H2109.5°109.5°
H1C5H3109.5°109.4°
H2C5H3109.5°109.5°
H5C6H6109.5°109.5°
H7C7H8109.5°109.6°
H10CABH9109.5°109.5°
H11C9H12109.5°109.6°
H22C4'H23109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C5CAAC3C27179.2°179.5°
C5CAAC3C41.2°0.0°
C5CAAC3C24178.1°180.0°
C5CAAC27C26178.9°179.8°
CAAC5H1H2120.0°120.0°
CAAC5H1H3120.0°120.0°
CAAC5H2H3120.0°120.0°
C5CAAC27H301.1°0.3°
CAAC3C4C24176.8°179.9°
CAAC3C4C2'105.4°85.0°
CAAC3C4S1124.1°155.0°
CAAC3C24C252.4°0.1°
C3CAAC27C261.9°0.7°
CAAC3C4H410.9°34.9°
C3CAAC5H190.4°89.9°
C3CAAC5H2149.6°150.0°
C3CAAC5H329.6°30.0°
CAAC3C24H27177.6°179.8°
C3CAAC27H30178.1°179.2°
C3C4C2'S1130.9°120.0°
C3C4C2'H4116.6°119.9°
C3C4C2'C645.8°179.7°
C3C4C2'O2'163.5°59.5°
C3C4S1H4114.8°120.0°
C3C4S1C1082.8°67.5°
C4C3C24C25179.3°180.0°
C4C3CAAC27178.0°179.4°
C3C4C2'C978.2°60.7°
C4C3C24H270.7°0.3°
C4C2'C6O2'117.7°120.2°
C4C2'C6C9124.7°119.9°
C4C2'C6C7176.0°176.9°
C4C2'C9CAB177.1°176.8°
C4C2'O2'C9120.8°120.2°
C2'C4S1H4113.6°120.0°
C2'C4S1C10145.7°172.5°
C2'C4C3C2477.8°95.1°
C4C2'C6H555.6°63.2°
C4C2'C6H663.6°56.9°
C4C2'C9H1156.8°63.2°
C4C2'C9H1262.7°56.9°
C4C2'O2'H13180.0°180.0°
C2'C6C7H5120.4°119.9°
C2'C6C7H6120.4°120.0°
C2'C6C7O3'51.1°57.6°
C6C2'C9CAB52.8°56.9°
C6C2'O2'C9119.2°119.6°
C6C2'C4S1176.7°59.7°
C6C2'C4H470.8°60.3°
C2'C6H5H6118.8°120.2°
C2'C6C7H7171.1°177.6°
C2'C6C7H869.0°62.3°
C6C2'C9H1167.5°176.9°
C6C2'C9H12173.0°63.0°
C6C2'O2'H1360.1°59.8°
C6C7O3'H7120.0°120.0°
C6C7O3'H8120.0°119.9°
C6C7O3'CAB55.9°61.1°
C7C6C2'O2'66.3°63.0°
C7C6C2'C951.3°57.0°
C7C6H5H6118.8°120.1°
C6C7H7H8119.8°120.1°
C7O3'CABC958.1°61.2°
O3'C7C6H569.3°177.5°
O3'C7C6H6171.4°62.4°
O3'C7H7H8119.9°120.0°
C7O3'CABH10178.1°178.9°
C7O3'CABH962.0°58.8°
O3'CABC9H10120.1°120.0°
O3'CABC9H9120.1°120.0°
O3'CABC9C2'54.3°57.6°
CABO3'C7H7175.9°178.9°
CABO3'C7H864.1°58.8°
O3'CABH10H9119.8°120.0°
O3'CABC9H1166.0°177.5°
O3'CABC9H12174.5°62.3°
CABC9C2'O2'64.7°63.0°
CABC9C2'H11120.3°119.9°
CABC9C2'H12120.2°119.9°
C9CABH10H9119.7°120.0°
CABC9H11H12119.2°120.2°
O2'C2'C4S165.6°60.5°
O2'C2'C4H446.9°179.5°
O2'C2'C6H5173.3°56.9°
O2'C2'C6H654.1°177.1°
O2'C2'C9H11175.1°56.9°
O2'C2'C9H1255.6°177.1°
C4S1C10C11179.0°175.8°
C4S1C10O5'59.2°64.2°
S1C4C3C2452.8°25.0°
S1C4C2'C952.8°179.3°
C4S1C10H1460.6°55.8°
S1C10C11O5'117.6°120.0°
S1C10C11H14118.9°120.0°
S1C10C11C8172.7°177.6°
S1C10C11O666.7°62.5°
S1C10O5'H14117.1°120.0°
S1C10O5'C5'177.2°178.8°
C10S1C4H432.1°52.5°
S1C10C11H1553.9°57.7°
C10C11C8O6120.2°119.9°
C10C11C8H15118.7°119.9°
C10C11C8N9175.5°176.8°
C10C11O6H15119.8°120.1°
C11C10O5'H14122.7°120.0°
C11C10O5'C5'62.5°61.2°
C10C11C8C2353.3°56.9°
C10C11C8H1665.5°63.0°
C10C11O6H20180.0°60.0°
C11C8N9C23122.7°119.6°
C11C8N9H16118.6°120.2°
C11C8N9N2119.8°145.2°
C8C11O6H15120.3°120.1°
C8C11C10O5'55.1°57.6°
C11C8C23C5'55.7°56.9°
C11C8C23OP364.2°62.9°
C11C8C23H16118.7°119.9°
C11C8N9C2068.0°34.8°
C8C11C10H1468.4°62.4°
C8C11O6H2060.2°179.7°
C11C8C23H25175.0°176.9°
C8N9N2C20173.8°180.0°
C8N9N2N1178.0°180.0°
C8N9C20C2178.0°180.0°
N9C8C11O664.3°63.2°
N9C8C23C5'178.0°176.9°
N9C8C23OP358.0°57.0°
N9C8C23H16119.0°120.2°
C8N9C20H192.0°0.0°
N9C8C11H1556.8°56.9°
N9C8C23H2562.8°63.2°
N9N2N1C20.8°0.0°
N2N9C20C25.6°0.0°
N2N9C8C23117.5°95.2°
N2N9C8H161.2°25.0°
N2N9C20H19174.4°180.0°
N2N1C2C14176.5°180.0°
N2N1C2C202.6°0.0°
N1N2N9C204.2°0.0°
N1C2C14C20172.8°180.0°
N1C2C14C1517.7°0.0°
N1C2C14C17158.2°180.0°
N1C2C20N94.9°0.0°
N1C2C20H19175.1°180.0°
C2C14C15C17175.8°180.0°
C2C14C15C16176.5°180.0°
C2C14C17C18177.3°179.5°
C14C2C20N9178.6°180.0°
C2C14C15H173.5°0.3°
C2C14C17H182.7°0.3°
C14C2C20H191.4°0.1°
C14C15C16H17180.0°179.7°
C14C15C16F1176.3°179.8°
C15C14C17C181.5°0.5°
C15C14C2C20169.5°180.0°
C14C15C16C190.8°0.3°
C15C14C17H18178.5°179.7°
C15C16F1C19177.1°179.9°
C16C15C14C170.7°0.0°
C15C16C19C181.3°0.0°
C15C16C19F3179.1°179.5°
F1C16C19C18175.7°180.0°
F1C16C19F33.9°0.5°
F1C16C15H173.8°0.1°
C14C17C18H18180.0°179.2°
C14C17C18F2176.7°179.2°
C14C17C18C190.9°0.8°
C17C14C2C2014.6°0.0°
C17C14C15H17179.3°179.7°
C17C18F2C19177.7°180.0°
C17C18C19F3180.0°180.0°
C17C18C19C160.5°0.5°
F2C18C19F32.2°0.0°
F2C18C19C16178.2°179.5°
F2C18C17H183.2°0.0°
C18C19F3C16179.6°179.5°
C19C18C17H18179.1°180.0°
C2C20N9H19180.0°180.0°
O6C11C10O5'175.7°177.5°
O6C11C8C23173.4°176.9°
O6C11C8H1654.7°57.0°
O6C11C10H1452.2°57.5°
C10O5'C5'C4'175.8°178.9°
C10O5'C5'C2363.2°61.2°
O5'C10C11H1563.6°62.4°
C10O5'C5'H2155.8°58.9°
O5'C5'C4'C23118.8°119.9°
O5'C5'C4'H21120.7°120.0°
O5'C5'C4'O4'63.4°64.2°
O5'C5'C23H21119.7°120.0°
O5'C5'C23OP362.7°62.3°
O5'C5'C23C858.1°57.6°
C5'O5'C10H1460.1°58.8°
O5'C5'C4'H22176.9°175.7°
O5'C5'C4'H2356.2°55.7°
O5'C5'C23H25177.3°177.5°
C5'C4'O4'H22119.6°120.0°
C5'C4'O4'H23119.6°120.0°
C4'C5'C23H21120.6°120.0°
C4'C5'C23OP357.0°57.6°
C4'C5'C23C8177.8°177.5°
C5'C4'H22H23121.1°120.0°
C5'C4'O4'H24180.0°175.0°
C4'C5'C23H2563.0°62.5°
O4'C4'C5'C23177.7°175.9°
O4'C4'C5'H2157.2°55.8°
O4'C4'H22H23121.1°120.0°
C5'C23OP3C8120.6°119.7°
C5'C23OP3H25119.2°120.2°
C5'C23C8H25119.2°119.9°
C5'C23C8H1663.0°63.0°
C23C5'C4'H2258.1°55.8°
C23C5'C4'H2362.6°64.2°
C5'C23OP3H26180.0°60.0°
OP3C23C8H25120.8°120.2°
OP3C23C8H16177.1°177.1°
OP3C23C5'H21177.6°177.7°
C3C24C25H27180.0°179.7°
C3C24C25C260.7°0.4°
C24C3CAAC271.1°0.5°
C24C3C4H4166.0°145.0°
C3C24C25H28179.3°179.7°
C24C25C26H28180.0°179.9°
C24C25C26C272.4°0.1°
C24C25C26H29177.6°179.5°
C25C26C27H29180.0°179.6°
C25C26C27CAA3.7°0.4°
C26C25C24H27179.3°180.0°
C25C26C27H30176.3°179.5°
C26C27CAAH30180.0°180.0°
C27C26C25H28177.6°180.0°
C27CAAC5H190.4°90.6°
C27CAAC5H229.7°29.5°
C27CAAC5H3149.6°149.5°
CAAC27C26H29176.3°180.0°
C9C2'C4H4165.2°59.2°
C9C2'C6H569.1°176.9°
C9C2'C6H6171.7°63.0°
C2'C9CABH10174.4°177.6°
C2'C9CABH965.8°62.4°
C2'C9H11H12119.2°120.1°
C9C2'O2'H1359.2°59.8°
C23C8N9C2054.7°84.8°
C23C8C11H1565.5°63.0°
C8C23C5'H2161.6°62.4°
C8C23OP3H2659.3°179.7°
C20N9C8H16173.4°155.0°
C19C16C15H17179.2°180.0°
H1C5H2H3120.0°119.9°
H5C6C7H750.7°62.5°
H5C6C7H8170.6°57.6°
H6C6C7H768.5°57.6°
H6C6C7H851.4°177.7°
H16C8C11H15175.8°177.1°
H16C8C23H2556.2°56.9°
H14C10C11H15172.8°177.7°
H27C24C25H280.7°0.0°
H29C26C25H282.4°0.5°
H29C26C27H303.7°0.0°
H10CABC9H1154.1°62.5°
H10CABC9H1265.4°57.7°
H9CABC9H11173.9°57.5°
H9CABC9H1254.4°177.7°
H15C11O6H2060.2°60.2°
H21C5'C4'H2262.4°64.2°
H21C5'C4'H23176.9°175.7°
H21C5'C23H2557.6°57.5°
H22C4'O4'H2460.4°65.0°
H23C4'O4'H2460.4°55.1°
H25C23OP3H2660.8°60.1°

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PDB entries from 2026-07-22

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