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A1JIM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C3'O3'sing1.43Å1.43Å
C3'C2'sing1.53Å1.54Å
C2'C1'sing1.53Å1.53Å
C1'C4sing1.53Å1.54Å
C4C5'sing1.53Å1.53Å
C5'O5'sing1.43Å1.45Å
C4N3sing1.47Å1.48Å
N3NAAsing1.29Å1.31ÅAromatic
NAAN2doub1.29Å1.32ÅAromatic
CAAN2sing1.34Å1.35ÅAromatic
CAAC8sing1.48Å1.48Å
C8CABdoub1.39Å1.40ÅAromatic
CABC9sing1.38Å1.38ÅAromatic
C9F1sing1.35Å1.38Å
C8C10sing1.39Å1.39ÅAromatic
C10C11doub1.38Å1.38ÅAromatic
C11F2sing1.35Å1.39Å
C11C12sing1.39Å1.38ÅAromatic
C12F3sing1.35Å1.37Å
CAAC13doub1.37Å1.37ÅAromatic
C1'O4'sing1.43Å1.46Å
C2'O2'sing1.43Å1.44Å
C14O2'sing1.43Å1.44Å
C14S1sing1.81Å1.77Å
C5S1sing1.81Å1.77Å
C5C16sing1.53Å1.56Å
C16C17sing1.53Å1.55Å
C17C18sing1.53Å1.54Å
C16C19sing1.53Å1.54Å
C19C20sing1.53Å1.55Å
C20C21sing1.53Å1.53Å
C21F4sing1.40Å1.33Å
C21F5sing1.40Å1.34Å
C16OP3sing1.43Å1.45Å
C5C6sing1.51Å1.53Å
C6N1sing1.35Å1.45Å
C23N1sing1.47Å1.49Å
C23C24sing1.53Å1.52Å
C24C25sing1.54Å1.51Å
C6O6doub1.21Å1.25Å
C14C5'sing1.53Å1.54Å
C21C18sing1.53Å1.53Å
C25N1sing1.47Å1.49Å
C13N3sing1.35Å1.32ÅAromatic
C12C9doub1.39Å1.37ÅAromatic
C4H6sing1.09Å1.10Å
C5H14sing1.09Å1.10Å
C10H10sing1.08Å1.08Å
C13H11sing1.08Å1.08Å
C17H15sing1.09Å1.10Å
C17H16sing1.09Å1.10Å
C20H21sing1.09Å1.10Å
C20H22sing1.09Å1.10Å
C24H26sing1.09Å1.10Å
C24H27sing1.09Å1.10Å
O3'H1sing0.97Å0.95Å
C3'H2sing1.09Å1.10Å
C3'H3sing1.09Å1.10Å
C2'H4sing1.09Å1.10Å
C1'H5sing1.09Å1.10Å
C5'H7sing1.09Å1.10Å
O5'H8sing0.97Å0.95Å
CABH9sing1.08Å1.08Å
O4'H12sing0.97Å0.95Å
C14H13sing1.09Å1.10Å
C18H17sing1.09Å1.10Å
C18H18sing1.09Å1.10Å
C19H19sing1.09Å1.10Å
C19H20sing1.09Å1.10Å
OP3H23sing0.97Å0.95Å
C23H24sing1.09Å1.10Å
C23H25sing1.09Å1.10Å
C25H28sing1.09Å1.10Å
C25H29sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O3'C3'C2'109.7°109.5°
C3'O3'H1109.5°114.0°
O3'C3'H2109.4°109.5°
O3'C3'H3109.4°109.5°
C3'C2'C1'111.6°109.5°
C3'C2'O2'109.4°109.5°
C2'C3'H2109.4°109.5°
C2'C3'H3109.4°109.5°
C3'C2'H4108.1°109.5°
C2'C1'C4108.4°109.2°
C2'C1'O4'109.4°109.5°
C1'C2'O2'110.1°109.4°
C1'C2'H4108.2°109.4°
C2'C1'H5109.1°109.5°
C1'C4C5'110.4°109.1°
C1'C4N3110.6°109.5°
C4C1'O4'110.8°109.5°
C1'C4H6108.0°109.7°
C4C1'H5108.9°109.5°
C4C5'O5'109.1°109.6°
C5'C4N3110.7°109.5°
C4C5'C14110.5°109.2°
C5'C4H6108.2°109.5°
C4C5'H7108.7°109.5°
O5'C5'C14110.3°109.5°
O5'C5'H7109.7°109.5°
C5'O5'H8109.5°114.0°
C4N3NAA116.8°125.8°
C4N3C13131.6°125.7°
N3C4H6108.8°109.5°
N3NAAN2107.8°110.5°
NAAN3C13111.2°108.5°
NAAN2CAA108.3°108.8°
N2CAAC8125.7°126.9°
N2CAAC13107.3°106.2°
CAAC8CAB120.6°120.1°
CAAC8C10118.3°120.1°
C8CAAC13127.0°126.9°
C8CABC9118.4°119.9°
CABC8C10120.9°119.9°
C8CABH9120.8°120.1°
CABC9F1120.7°119.9°
CABC9C12120.6°120.1°
C9CABH9120.8°120.0°
F1C9C12118.4°120.0°
C8C10C11119.5°119.9°
C8C10H10120.2°120.0°
C10C11F2121.8°120.0°
C10C11C12119.6°120.0°
C11C10H10120.2°120.1°
F2C11C12118.6°120.0°
C11C12F3119.1°119.9°
C11C12C9120.9°120.2°
F3C12C9120.0°120.0°
CAAC13N3105.3°106.1°
CAAC13H11127.3°127.0°
O4'C1'H5110.1°109.6°
C1'O4'H12109.5°114.0°
C2'O2'C14114.7°114.1°
O2'C2'H4109.3°109.5°
O2'C14S1107.3°109.5°
O2'C14C5'108.2°109.4°
O2'C14H13112.0°109.4°
C14S1C597.8°103.0°
S1C14C5'111.0°109.5°
S1C14H13107.8°109.5°
S1C5C16113.1°109.5°
S1C5C6110.3°109.5°
S1C5H14105.1°109.4°
C5C16C17112.1°109.5°
C5C16C19111.4°109.5°
C5C16OP3108.3°109.5°
C16C5C6113.1°109.5°
C16C5H14107.2°109.5°
C16C17C18111.2°109.5°
C17C16C19109.9°109.5°
C17C16OP3108.5°109.5°
C16C17H15109.1°109.5°
C16C17H16109.0°109.5°
C17C18C21111.5°109.4°
C18C17H15109.0°109.5°
C18C17H16109.1°109.5°
C17C18H17109.0°109.5°
C17C18H18109.0°109.5°
C16C19C20111.8°109.5°
C19C16OP3106.4°109.5°
C16C19H19108.9°109.4°
C16C19H20108.9°109.5°
C19C20C21111.7°109.4°
C19C20H21108.9°109.5°
C19C20H22108.9°109.4°
C20C19H19108.9°109.5°
C20C19H20108.9°109.5°
C20C21F4107.9°109.5°
C20C21F5110.2°109.4°
C20C21C18111.8°109.5°
C21C20H21108.9°109.5°
C21C20H22108.9°109.5°
F4C21F5109.0°109.5°
F4C21C18109.0°109.5°
F5C21C18108.9°109.5°
C16OP3H23109.5°114.0°
C5C6N1119.5°120.0°
C5C6O6119.2°120.0°
C6C5H14107.5°109.5°
C6N1C23119.8°136.0°
N1C6O6116.9°120.0°
C6N1C25117.4°136.1°
N1C23C2483.2°88.0°
C23N1C2597.5°87.9°
N1C23H24115.6°113.5°
N1C23H25115.6°113.4°
C23C24C2595.6°83.3°
C23C24H26112.8°114.4°
C23C24H27112.8°114.3°
C24C23H24115.6°113.5°
C24C23H25115.6°113.4°
C24C25N183.4°87.9°
C25C24H26112.8°114.2°
C25C24H27112.8°114.2°
C24C25H28115.5°113.5°
C24C25H29115.5°113.5°
C14C5'H7108.6°109.5°
C5'C14H13110.5°109.5°
C21C18H17108.9°109.5°
C21C18H18108.9°109.4°
N1C25H28115.5°113.6°
N1C25H29115.5°113.3°
N3C13H11127.4°127.0°
H15C17H16109.5°109.5°
H21C20H22109.5°109.5°
H26C24H27109.5°113.3°
H2C3'H3109.4°109.5°
H17C18H18109.5°109.5°
H19C19H20109.5°109.5°
H24C23H25109.5°112.8°
H28C25H29109.5°112.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O3'C3'C2'H2120.1°120.0°
O3'C3'C2'H3120.0°120.0°
O3'C3'C2'C1'176.3°175.0°
O3'C3'C2'O2'61.6°65.0°
O3'C3'H2H3119.9°120.0°
O3'C3'C2'H457.4°55.0°
C3'C2'C1'O2'121.7°120.0°
C3'C2'C1'H4118.9°120.0°
C3'C2'C1'C4178.5°177.6°
C3'C2'C1'O4'57.6°57.7°
C3'C2'O2'H4118.2°120.1°
C3'C2'O2'C14174.9°178.9°
C2'C3'O3'H1180.0°179.9°
C2'C3'H2H3119.9°120.0°
C3'C2'C1'H563.0°62.5°
C2'C1'C4O4'120.1°119.9°
C2'C1'C4H5118.6°119.9°
C2'C1'C4C5'55.4°57.0°
C2'C1'C4N3178.3°176.9°
C2'C1'O4'H5119.9°120.1°
C1'C2'O2'H4118.7°119.9°
C1'C2'O2'C1462.1°61.2°
C2'C1'C4H662.7°62.9°
C1'C2'C3'H263.6°65.0°
C1'C2'C3'H356.3°55.0°
C2'C1'O4'H12180.0°59.9°
C1'C4C5'N3122.8°119.9°
C1'C4C5'H6118.0°120.0°
C1'C4C5'O5'177.2°176.9°
C1'C4N3H6118.5°120.3°
C1'C4N3NAA110.5°95.4°
C4C1'O4'H5120.6°120.2°
C4C1'C2'O2'56.8°57.6°
C1'C4C5'C1455.8°57.0°
C1'C4N3C1360.4°84.3°
C4C1'C2'H462.6°62.4°
C1'C4C5'H763.2°62.9°
C4C1'O4'H1260.5°179.6°
C4C5'O5'C14121.5°119.7°
C4C5'O5'H7119.0°120.2°
C5'C4N3H6118.8°120.1°
C5'C4N3NAA126.8°145.0°
C5'C4C1'O4'64.6°62.9°
C4C5'C14O2'55.9°57.5°
C4C5'C14S1173.4°177.5°
C4C5'C14H7119.1°119.9°
C5'C4N3C1362.2°35.3°
C5'C4C1'H5174.1°176.9°
C4C5'O5'H8180.0°180.0°
C4C5'C14H1367.1°62.4°
O5'C5'C4N360.0°63.2°
O5'C5'C14O2'176.6°177.5°
O5'C5'C14S165.9°62.5°
O5'C5'C14H7120.2°120.1°
O5'C5'C4H659.2°56.9°
O5'C5'C14H1353.6°57.6°
C4N3NAAC13172.8°179.8°
C4N3NAAN2176.4°180.0°
C4N3C13CAA175.9°179.7°
N3C4C1'O4'58.3°57.0°
N3C4C5'C14178.6°176.9°
C4N3C13H114.0°0.2°
N3C4C1'H563.0°63.3°
N3C4C5'H759.6°56.9°
N3NAAN2CAA1.1°0.5°
NAAN3C13CAA4.6°0.0°
NAAN3C4H68.0°24.9°
NAAN3C13H11175.4°180.0°
NAAN2CAAC8178.5°180.0°
NAAN2CAAC131.6°0.4°
N2NAAN3C133.7°0.3°
N2CAAC8C13176.2°179.5°
N2CAAC8CAB158.1°0.1°
N2CAAC8C1017.2°179.7°
N2CAAC13N33.7°0.3°
N2CAAC13H11176.3°179.7°
CAAC8CABC10175.2°179.7°
CAAC8CABC9177.9°179.7°
CAAC8C10C11176.8°179.7°
C8CAAC13N3179.5°179.8°
CAAC8C10H103.2°0.2°
C8CAAC13H110.5°0.2°
CAAC8CABH92.1°0.3°
C8CABC9H9180.0°180.0°
C8CABC9F1177.1°180.0°
CABC8C10C111.5°0.0°
CABC8CAAC1318.1°179.5°
C8CABC9C123.4°0.0°
CABC8C10H10178.5°180.0°
CABC9F1C12173.9°179.9°
C9CABC8C102.7°0.0°
CABC9C12C113.1°0.0°
CABC9C12F3177.9°180.0°
F1C9C12C11176.9°179.9°
F1C9C12F34.0°0.1°
F1C9CABH92.9°0.1°
C8C10C11H10180.0°180.0°
C8C10C11F2179.0°180.0°
C8C10C11C121.1°0.0°
C10C8CAAC13166.6°0.2°
C10C8CABH9177.3°180.0°
C10C11F2C12178.0°180.0°
C10C11C12F3179.1°180.0°
C10C11C12C91.9°0.0°
F2C11C12F31.1°0.1°
F2C11C12C9179.9°180.0°
F2C11C10H101.0°0.1°
C11C12F3C9179.1°180.0°
C12C11C10H10178.9°180.0°
CAAC13N3H11180.0°180.0°
O4'C1'C2'O2'64.1°62.3°
O4'C1'C4H6177.3°177.1°
O4'C1'C2'H4176.5°177.7°
C2'O2'C14S1179.9°178.8°
C2'O2'C14C5'60.2°61.1°
O2'C2'C3'H258.5°55.0°
O2'C2'C3'H3178.4°175.0°
O2'C2'C1'H5175.3°177.5°
C2'O2'C14H1361.8°58.8°
O2'C14S1C5'118.1°119.9°
O2'C14S1H13120.8°120.0°
O2'C14S1C555.6°65.0°
O2'C14C5'H13123.0°119.9°
C14O2'C2'H456.7°58.8°
O2'C14C5'H763.2°62.4°
C14S1C5C16144.8°175.0°
C14S1C5C687.4°65.0°
S1C14C5'H13119.5°120.1°
C14S1C5H1428.2°55.0°
S1C14C5'H754.3°57.6°
S1C5C16C6126.4°120.0°
S1C5C16H14115.4°119.9°
S1C5C16C1749.6°60.2°
S1C5C16C19173.3°59.7°
S1C5C16OP370.0°179.8°
S1C5C6H14114.1°119.9°
S1C5C6N1138.9°153.5°
S1C5C6O665.5°26.4°
C5S1C14C5'173.7°175.0°
C5S1C14H1365.2°55.0°
C5C16C17C19124.5°120.0°
C5C16C17OP3119.6°120.0°
C5C16C17C18178.6°180.0°
C5C16C19OP3117.9°120.0°
C5C16C19C20179.5°180.0°
C16C5C6H14118.1°120.0°
C16C5C6N193.2°86.4°
C16C5C6O662.3°93.6°
C5C16C17H1558.4°60.0°
C5C16C17H1661.1°60.0°
C5C16C19H1960.2°60.0°
C5C16C19H2059.1°60.0°
C5C16OP3H23180.0°179.9°
C16C17C18H15120.3°120.0°
C16C17C18H16120.3°120.0°
C17C16C19OP3117.2°120.0°
C17C16C19C2055.7°60.0°
C17C16C5C676.7°179.8°
C16C17C18C2156.6°60.0°
C17C16C5H14165.0°59.7°
C16C17H15H16119.2°120.0°
C16C17C18H1763.6°60.0°
C16C17C18H18177.0°180.0°
C17C16C19H1964.7°180.0°
C17C16C19H20176.0°60.0°
C17C16OP3H2358.1°60.1°
C18C17C16C1956.8°60.0°
C17C18C21C2054.5°60.0°
C17C18C21F464.8°60.0°
C17C18C21F5176.4°180.0°
C18C17C16OP359.1°60.0°
C17C18C21H17120.3°120.0°
C17C18C21H18120.3°120.0°
C18C17H15H16119.3°120.0°
C17C18H17H18119.1°120.0°
C16C19C20H19120.4°119.9°
C16C19C20H20120.3°120.0°
C16C19C20C2154.2°60.0°
C19C16C5C646.9°60.3°
C19C16C5H1471.3°179.7°
C19C16C17H15177.1°180.0°
C19C16C17H1663.4°60.0°
C16C19C20H21174.5°59.9°
C16C19C20H2266.1°180.0°
C16C19H19H20118.9°120.0°
C19C16OP3H2360.1°59.9°
C19C20C21H21120.4°120.0°
C19C20C21H22120.3°120.0°
C19C20C21F466.9°60.0°
C19C20C21F5174.2°179.9°
C20C19C16OP361.6°60.0°
C19C20C21C1853.0°60.1°
C19C20H21H22119.0°120.0°
C20C19H19H20118.9°120.1°
C20C21F4F5119.7°120.0°
C20C21F4C18121.6°120.0°
C20C21F5C18122.9°120.0°
C21C20H21H22118.9°120.0°
C20C21C18H1765.8°60.0°
C20C21C18H18174.8°180.0°
C21C20C19H1966.2°180.0°
C21C20C19H20174.5°60.0°
F4C21F5C18118.8°120.0°
F4C21C20H2153.5°180.0°
F4C21C20H22172.8°60.0°
F4C21C18H17174.9°180.0°
F4C21C18H1855.6°60.0°
F5C21C20H2165.4°60.0°
F5C21C20H2253.8°60.0°
F5C21C18H1756.1°60.0°
F5C21C18H1863.2°60.0°
OP3C16C5C6163.6°59.8°
OP3C16C5H1445.4°60.3°
OP3C16C17H1561.2°60.0°
OP3C16C17H16179.4°180.0°
OP3C16C19H19178.1°60.0°
OP3C16C19H2058.8°180.0°
C5C6N1O6156.1°180.0°
C5C6N1C2344.4°174.8°
C5C6N1C25162.2°5.5°
C6N1C23C25127.6°179.8°
C6N1C23C24132.1°152.9°
C6N1C25C24133.8°153.0°
N1C6C5H1424.8°33.6°
C6N1C23H2416.9°38.1°
C6N1C23H25112.8°92.4°
C6N1C25H2818.6°92.3°
C6N1C25H29111.0°38.2°
N1C23C24H24115.1°114.8°
N1C23C24H25115.1°114.7°
N1C23C24C254.4°26.2°
C23N1C6O6159.5°5.2°
N1C23C24H26122.0°87.4°
N1C23C24H27113.2°139.8°
N1C23H24H25132.6°130.8°
C23N1C25H28110.7°87.5°
C23N1C25H29119.7°142.0°
C23C24C25H26117.6°113.7°
C23C24C25H27117.6°113.7°
C23C24H26H27126.6°133.4°
C24C23H24H25132.6°130.8°
C23C24C25H28110.8°88.7°
C23C24C25H29119.6°140.8°
C24C25N1H28115.2°114.7°
C24C25N1H29115.2°114.7°
C25C24H26H27126.5°133.0°
C25C24C23H24110.7°141.0°
C25C24C23H25119.6°88.5°
C24C25H28H29132.5°130.8°
O6C6N1C2541.7°174.5°
O6C6C5H14179.6°146.3°
C14C5'C4H662.2°63.0°
C14C5'O5'H858.5°60.2°
C21C18C17H15176.9°180.0°
C21C18C17H1663.6°60.0°
C18C21C20H21173.4°60.0°
C18C21C20H2267.3°180.0°
C21C18H17H18119.0°120.0°
N1C25C24H26122.0°87.5°
N1C25C24H27113.2°139.9°
C25N1C23H24110.7°142.1°
C25N1C23H25119.6°87.4°
N1C25H28H29132.5°130.8°
C13N3C4H6179.0°155.4°
C12C9CABH9176.6°180.0°
H6C4C1'H555.9°56.9°
H6C4C5'H7178.8°177.1°
H15C17C18H1756.6°60.0°
H15C17C18H1862.8°60.1°
H16C17C18H17176.1°NaN°
H16C17C18H1856.7°59.9°
H21C20C19H1954.1°60.0°
H21C20C19H2065.2°179.9°
H22C20C19H19173.5°60.1°
H22C20C19H2054.2°60.0°
H26C24C23H246.9°27.5°
H26C24C23H25122.8°157.9°
H26C24C25H286.8°157.6°
H26C24C25H29122.8°27.1°
H27C24C23H24131.7°105.4°
H27C24C23H251.9°25.0°
H27C24C25H28131.6°25.0°
H27C24C25H291.9°105.5°
H1O3'C3'H259.9°60.0°
H1O3'C3'H360.0°59.9°
H2C3'C2'H4177.4°175.0°
H3C3'C2'H462.6°65.0°
H4C2'C1'H555.9°57.5°
H5C1'O4'H1260.1°60.2°
H7C5'O5'H861.0°59.9°
H7C5'C14H13173.8°177.7°

257179

PDB entries from 2026-07-29

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