Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

A1JDO

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O02C01sing1.43Å1.40Å
C03O02sing1.43Å1.41Å
C04C03sing1.53Å1.54Å
C05C04sing1.53Å1.53Å
N06C05sing1.47Å1.47Å
C08C07sing1.53Å1.54Å
C09C08sing1.55Å1.47Å
C10C09sing1.54Å1.56Å
N11C10sing1.48Å1.26Å
C13C12sing1.47Å1.54Å
C14C13trip1.17Å1.19Å
C12N11sing1.47Å1.18Å
C15N11sing1.49Å1.59Å
C07N06sing1.46Å1.46Å
S16N06sing1.66Å1.71Å
O17S16doub1.42Å1.47Å
O18S16doub1.42Å1.47Å
C19S16sing1.76Å1.81Å
C20C19doub1.36Å1.38ÅAromatic
C21C20sing1.41Å1.42ÅAromatic
C22C21doub1.42Å1.36ÅAromatic
C24C23doub1.36Å1.38ÅAromatic
C25C24sing1.39Å1.40ÅAromatic
C26C25doub1.36Å1.39ÅAromatic
C23C22sing1.41Å1.43ÅAromatic
C27C22sing1.41Å1.42ÅAromatic
C28C27doub1.36Å1.38ÅAromatic
C08C15sing1.55Å1.32Å
C19C28sing1.39Å1.39ÅAromatic
C21C26sing1.41Å1.44ÅAromatic
C01H012sing1.09Å1.10Å
C01H013sing1.09Å1.10Å
C01H011sing1.09Å1.10Å
C03H032sing1.09Å1.10Å
C03H031sing1.09Å1.10Å
C04H042sing1.09Å1.10Å
C04H041sing1.09Å1.10Å
C05H051sing1.09Å1.10Å
C05H052sing1.09Å1.10Å
C07H072sing1.09Å1.10Å
C07H071sing1.09Å1.10Å
C08H081sing1.09Å1.10Å
C10H101sing1.09Å1.10Å
C10H102sing1.09Å1.10Å
C12H121sing1.09Å1.10Å
C12H122sing1.09Å1.10Å
C14H141sing1.05Å1.06Å
C15H151sing1.09Å1.10Å
C15H152sing1.09Å1.10Å
C20H201sing1.08Å1.08Å
C23H231sing1.08Å1.08Å
C24H241sing1.08Å1.08Å
C26H261sing1.08Å1.08Å
C27H271sing1.08Å1.08Å
C28H281sing1.08Å1.08Å
C09H091sing1.09Å1.10Å
C09H092sing1.09Å1.10Å
C25H251sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C01O02C03114.8°114.0°
O02C01H012109.5°109.4°
O02C01H013109.5°109.4°
O02C01H011109.5°109.4°
O02C03C04108.9°109.4°
O02C03H032109.6°109.5°
O02C03H031109.6°109.5°
C03C04C05111.8°109.4°
C04C03H032109.6°109.5°
C04C03H031109.6°109.5°
C03C04H042108.9°109.5°
C03C04H041108.9°109.5°
C04C05N06113.2°109.5°
C05C04H042108.9°109.5°
C05C04H041108.8°109.5°
C04C05H051108.5°109.5°
C04C05H052108.5°109.5°
C05N06C07117.7°120.0°
C05N06S16115.7°120.0°
N06C05H051108.5°109.5°
N06C05H052108.5°109.4°
C07C08C09108.2°110.7°
C08C07N06116.4°109.5°
C07C08C15114.9°110.7°
C08C07H072107.7°109.5°
C08C07H071107.7°109.5°
C07C08H081108.4°110.6°
C08C09C10106.6°105.1°
C09C08C15104.2°102.9°
C09C08H081109.3°110.9°
C08C09H091110.2°110.3°
C08C09H092110.2°110.3°
C09C10N11103.2°107.0°
C09C10H101111.0°110.0°
C09C10H102111.0°109.9°
C10C09H091110.2°110.3°
C10C09H092110.2°110.3°
C10N11C12111.8°111.0°
C10N11C15106.9°105.8°
N11C10H101111.0°109.9°
N11C10H102111.0°110.1°
C12C13C14178.2°179.9°
C13C12N11108.1°109.5°
C13C12H121109.8°109.5°
C13C12H122109.8°109.5°
C13C14H141180.0°180.0°
C12N11C15115.3°111.0°
N11C12H121109.8°109.4°
N11C12H122109.9°109.5°
N11C15C08103.0°103.2°
N11C15H151111.0°110.6°
N11C15H152111.1°110.6°
C07N06S16117.7°120.0°
N06C07H072107.7°109.5°
N06C07H071107.7°109.5°
N06S16O17112.9°106.4°
N06S16O18111.7°106.4°
N06S16C19110.9°107.2°
O17S16O18101.7°123.1°
O17S16C19110.2°106.4°
O18S16C19109.0°106.4°
S16C19C20118.3°119.5°
S16C19C28120.6°119.5°
C19C20C21119.3°119.7°
C20C19C28121.1°121.0°
C19C20H201120.4°120.2°
C20C21C22119.7°119.3°
C20C21C26119.0°121.3°
C21C20H201120.4°120.2°
C21C22C23119.7°119.3°
C21C22C27121.0°119.4°
C22C21C26121.3°119.4°
C23C24C25121.5°121.0°
C24C23C22119.1°119.7°
C24C23H231120.5°120.1°
C23C24H241119.3°119.5°
C24C25C26119.8°121.0°
C25C24H241119.3°119.5°
C24C25H251120.1°119.5°
C25C26C21118.6°119.6°
C25C26H261120.7°120.2°
C26C25H251120.1°119.5°
C23C22C27119.2°121.3°
C22C23H231120.5°120.2°
C22C27C28119.1°119.6°
C22C27H271120.4°120.2°
C27C28C19119.8°121.0°
C28C27H271120.4°120.2°
C27C28H281120.1°119.5°
C15C08H081111.6°110.7°
C08C15H151111.1°110.7°
C08C15H152111.1°110.7°
C19C28H281120.1°119.5°
C21C26H261120.7°120.2°
H012C01H013109.5°109.5°
H012C01H011109.4°109.5°
H013C01H011109.5°109.5°
H032C03H031109.4°109.5°
H042C04H041109.5°109.5°
H051C05H052109.5°109.5°
H072C07H071109.5°109.5°
H101C10H102109.4°109.8°
H121C12H122109.5°109.4°
H151C15H152109.5°110.8°
H091C09H092109.5°110.3°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C01O02C03C0478.5°180.0°
O02C01H012H013120.0°119.9°
O02C01H012H011120.0°120.0°
O02C01H013H011120.0°119.9°
C01O02C03H032161.6°60.0°
C01O02C03H03141.5°60.0°
O02C03C04H032119.9°120.0°
O02C03C04H031119.9°120.0°
O02C03C04C0546.4°180.0°
C03O02C01H012180.0°60.0°
C03O02C01H01360.0°60.0°
C03O02C01H01160.0°180.0°
O02C03H032H031120.3°120.0°
O02C03C04H042166.7°60.0°
O02C03C04H04174.0°60.0°
C03C04C05H042120.3°120.0°
C03C04C05H041120.3°120.0°
C03C04C05N06148.3°180.0°
C04C03H032H031120.2°120.0°
C03C04H042H041119.0°120.0°
C03C04C05H05127.8°60.0°
C03C04C05H05291.1°60.0°
C04C05N06H051120.5°120.0°
C04C05N06H052120.5°120.0°
C04C05N06C0759.1°85.0°
C04C05N06S16154.2°95.0°
C05C04C03H03273.6°60.0°
C05C04C03H031166.3°60.0°
C05C04H042H041118.9°120.0°
C04C05H051H052118.3°120.0°
C05N06C07C08105.8°67.3°
C05N06C07S16146.0°180.0°
C05N06S16O17129.6°160.3°
C05N06S16O1815.7°27.4°
C05N06S16C19106.2°86.1°
N06C05C04H04291.3°60.0°
N06C05C04H04128.0°60.0°
N06C05H051H052118.3°120.0°
C05N06C07H072133.1°52.7°
C05N06C07H07115.1°172.7°
C07C08C09C15122.7°118.4°
C07C08C09H081117.9°123.2°
C07C08C09C10141.7°140.3°
C07C08C15N11151.9°155.8°
C08C07N06H072121.0°120.0°
C08C07N06H071121.0°120.0°
C08C07N06S16108.2°112.8°
C07C08C15H081124.0°123.1°
C08C07H072H071116.9°120.0°
C07C08C15H15189.2°37.4°
C07C08C15H15233.0°85.8°
C07C08C09H09198.7°100.8°
C07C08C09H09222.2°21.4°
C08C09C10H091119.5°118.9°
C08C09C10H092119.6°118.9°
C08C09C10N118.5°1.2°
C09C08C15N1133.8°37.4°
C09C08C07N06145.7°71.2°
C09C08C15H081117.9°118.6°
C09C08C07H07224.7°168.8°
C09C08C07H07193.4°48.8°
C08C09C10H101127.5°120.6°
C08C09C10H102110.5°118.4°
C09C08C15H151152.7°81.0°
C09C08C15H15285.2°155.8°
C08C09H091H092121.4°122.2°
C09C10N11H101119.0°119.4°
C09C10N11H102119.0°119.5°
C09C10N11C12155.3°145.8°
C09C10N11C1528.2°25.3°
C10C09C08C1519.0°22.0°
C10C09C08H081100.4°96.5°
C09C10H101H102122.9°121.1°
C10C09H091H092121.3°122.1°
C10N11C12C1370.6°72.6°
C10N11C12C15122.4°117.3°
C10N11C15C0842.9°39.2°
N11C10H101H102122.9°121.3°
C10N11C12H121169.6°167.4°
C10N11C12H12249.2°47.4°
C10N11C15H151161.9°79.2°
C10N11C15H15276.0°157.7°
N11C10C09H091111.0°117.7°
N11C10C09H092128.1°120.2°
C13C12N11H121119.8°120.0°
C13C12N11H122119.8°120.1°
C13C12N11C15167.0°170.0°
C13C12H121H122120.6°120.0°
C12C13C14H14117.2°154.3°
C14C13C12N1137.1°106.0°
C14C13C12H121156.9°134.0°
C14C13C12H12282.7°14.0°
C12N11C15C08167.9°159.7°
C12N11C10H10185.7°94.8°
C12N11C10H10236.3°26.4°
N11C12H121H122120.7°120.0°
C12N11C15H15173.1°41.2°
C12N11C15H15249.0°81.9°
N11C15C08H151118.9°118.4°
N11C15C08H152118.9°118.4°
N11C15C08H08184.1°81.1°
C15N11C10H101147.2°144.7°
C15N11C10H10290.8°94.1°
C15N11C12H12147.2°50.0°
C15N11C12H12273.3°69.9°
N11C15H151H152123.0°123.0°
C07N06S16O1783.8°19.7°
C07N06S16O18162.3°152.6°
C07N06S16C1940.5°93.9°
N06C07C08C1529.8°175.2°
C07N06C05H05161.4°35.0°
C07N06C05H052179.7°155.0°
N06C07H072H071116.8°120.0°
N06C07C08H08195.9°52.1°
N06S16O17O18119.8°122.9°
N06S16O17C19124.6°114.1°
N06S16O18C19122.9°114.1°
N06S16C19C20107.6°84.5°
N06S16C19C2872.9°95.7°
S16N06C05H05185.2°145.0°
S16N06C05H05233.7°25.0°
S16N06C07H07212.8°127.3°
S16N06C07H071130.8°7.2°
O17S16O18C19116.4°123.0°
O17S16C19C2018.2°161.9°
O17S16C19C28161.4°17.8°
O18S16C19C20129.0°29.0°
O18S16C19C2850.6°150.7°
S16C19C20C28179.6°179.7°
S16C19C20C21180.0°179.7°
S16C19C28C27179.7°179.7°
S16C19C20H2010.0°0.0°
S16C19C28H2810.2°0.3°
C19C20C21H201180.0°179.7°
C19C20C21C220.7°0.0°
C20C19C28C270.2°0.0°
C19C20C21C26179.7°180.0°
C20C19C28H281179.8°180.0°
C20C21C22C26179.6°180.0°
C20C21C26C25179.3°179.9°
C20C21C22C23180.0°179.9°
C20C21C22C270.6°0.0°
C21C20C19C280.5°0.0°
C20C21C26H2610.7°0.0°
C21C22C23C240.1°0.0°
C22C21C26C250.3°0.0°
C21C22C23C27179.4°180.0°
C21C22C27C280.3°0.0°
C22C21C20H201179.3°179.7°
C21C22C23H231179.9°180.0°
C22C21C26H261179.7°179.9°
C21C22C27H271179.7°180.0°
C23C24C25H241180.0°179.9°
C23C24C25C261.7°0.0°
C24C23C22H231180.0°180.0°
C24C23C22C27179.5°180.0°
C23C24C25H251178.4°180.0°
C24C25C26H251180.0°179.9°
C25C24C23C220.9°0.0°
C24C25C26C211.3°0.0°
C25C24C23H231179.1°180.0°
C24C25C26H261178.7°179.9°
C25C26C21H261180.0°179.9°
C26C25C24H241178.4°179.9°
C23C22C27C28179.7°180.0°
C23C22C21C260.4°0.0°
C22C23C24H241179.1°180.0°
C23C22C27H2710.3°0.0°
C22C27C28H271180.0°179.9°
C22C27C28C190.1°0.0°
C27C22C21C26179.8°180.0°
C27C22C23H2310.5°0.1°
C22C27C28H281179.9°180.0°
C27C28C19H281180.0°180.0°
C15C08C07H07291.2°55.3°
C15C08C07H071150.7°64.7°
C08C15H151H152123.0°123.2°
C15C08C09H091138.6°140.8°
C15C08C09H092100.5°97.0°
C28C19C20H201179.5°179.7°
C19C28C27H271179.9°179.9°
C26C21C20H2010.3°0.3°
C21C26C25H251178.7°180.0°
H012C01H013H011120.0°120.1°
H032C03C04H04246.8°59.9°
H032C03C04H041166.1°180.0°
H031C03C04H04273.4°180.0°
H031C03C04H04146.0°60.0°
H042C04C05H051148.1°180.0°
H042C04C05H05229.2°59.9°
H041C04C05H05192.5°60.0°
H041C04C05H052148.5°180.0°
H072C07C08H081143.1°67.9°
H071C07C08H08125.1°172.1°
H081C08C15H15134.8°160.5°
H081C08C15H152156.9°37.3°
H081C08C09H09119.1°22.4°
H081C08C09H092140.1°144.6°
H101C10C09H0918.0°1.7°
H101C10C09H092112.9°120.5°
H102C10C09H091129.9°122.7°
H102C10C09H0929.1°0.6°
H231C23C24H2410.9°0.0°
H241C24C25H2511.6°0.0°
H261C26C25H2511.3°0.1°
H271C27C28H2810.1°0.1°

251801

PDB entries from 2026-04-08

PDB statisticsPDBj update infoContact PDBjnumon