Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

A1JDD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2doub1.40Å1.41ÅAromatic
C2C3sing1.39Å1.39ÅAromatic
C3C4doub1.38Å1.39ÅAromatic
C4C5sing1.38Å1.39ÅAromatic
C5C6doub1.38Å1.38ÅAromatic
C4C7sing1.51Å1.53Å
C7C8sing1.51Å1.53Å
C8C9doub1.38Å1.39ÅAromatic
C9C10sing1.39Å1.40ÅAromatic
C10C11doub1.40Å1.40ÅAromatic
C11C12sing1.39Å1.39ÅAromatic
C12C13doub1.38Å1.38ÅAromatic
C11O14sing1.36Å1.36Å
C10C15sing1.48Å1.49Å
C15C16doub1.39Å1.39ÅAromatic
C16C17sing1.38Å1.39ÅAromatic
C17C18doub1.38Å1.38ÅAromatic
C18C19sing1.38Å1.38ÅAromatic
C19C20doub1.38Å1.38ÅAromatic
C7C21sing1.53Å1.54Å
C7C22sing1.53Å1.54Å
C2C23sing1.48Å1.48Å
C23C24doub1.39Å1.40ÅAromatic
C24C25sing1.38Å1.38ÅAromatic
C25C26doub1.38Å1.38ÅAromatic
C26C27sing1.38Å1.38ÅAromatic
C27C28doub1.38Å1.39ÅAromatic
C1O29sing1.36Å1.36Å
C6C1sing1.39Å1.39ÅAromatic
C13C8sing1.38Å1.39ÅAromatic
C20C15sing1.39Å1.40ÅAromatic
C28C23sing1.39Å1.39ÅAromatic
C3H3sing1.08Å1.08Å
C5H5sing1.08Å1.08Å
C6H6sing1.08Å1.08Å
C13H13sing1.08Å1.08Å
C17H17sing1.08Å1.08Å
C20H20sing1.08Å1.08Å
C21H21Csing1.09Å1.10Å
C21H21Bsing1.09Å1.10Å
C21H21Asing1.09Å1.10Å
C22H22Bsing1.09Å1.10Å
C22H22Asing1.09Å1.10Å
C22H22Csing1.09Å1.10Å
C24H24sing1.08Å1.08Å
C12H12sing1.08Å1.08Å
C16H16sing1.08Å1.08Å
C18H18sing1.08Å1.08Å
C19H19sing1.08Å1.08Å
C25H25sing1.08Å1.08Å
C26H26sing1.08Å1.08Å
C27H27sing1.08Å1.08Å
C28H28sing1.08Å1.08Å
C9H9sing1.08Å1.08Å
O14H14sing0.97Å0.95Å
O29H29sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C1C2C3117.7°119.7°
C1C2C23124.1°120.2°
C2C1O29122.8°120.1°
C2C1C6120.4°119.8°
C2C3C4122.1°119.9°
C3C2C23118.1°120.2°
C2C3H3118.9°120.0°
C3C4C5119.0°120.3°
C3C4C7119.0°119.8°
C4C3H3118.9°120.1°
C4C5C6120.4°120.3°
C5C4C7121.9°119.9°
C4C5H5119.8°119.8°
C5C6C1120.3°120.1°
C6C5H5119.8°119.9°
C5C6H6119.8°119.9°
C4C7C8107.8°109.5°
C4C7C21111.2°109.5°
C4C7C22108.6°109.5°
C7C8C9120.8°119.8°
C8C7C21112.4°109.5°
C8C7C22109.0°109.5°
C7C8C13120.5°119.9°
C8C9C10122.1°119.9°
C9C8C13118.7°120.3°
C8C9H9119.0°120.1°
C9C10C11117.8°119.7°
C9C10C15118.5°120.2°
C10C9H9118.9°120.0°
C10C11C12120.5°119.7°
C10C11O14120.8°120.1°
C11C10C15123.5°120.1°
C11C12C13120.3°120.1°
C12C11O14118.7°120.2°
C11C12H12119.9°119.9°
C12C13C8120.6°120.3°
C12C13H13119.7°119.8°
C13C12H12119.9°120.0°
C11O14H14109.5°114.0°
C10C15C16120.6°120.1°
C10C15C20121.0°120.1°
C15C16C17120.7°119.8°
C16C15C20118.2°119.8°
C15C16H16119.7°120.1°
C16C17C18120.4°120.1°
C16C17H17119.8°119.9°
C17C16H16119.6°120.1°
C17C18C19119.6°120.2°
C18C17H17119.8°120.0°
C17C18H18120.2°119.9°
C18C19C20120.4°120.2°
C19C18H18120.2°119.9°
C18C19H19119.8°119.9°
C19C20C15120.7°119.8°
C19C20H20119.7°120.1°
C20C19H19119.8°119.9°
C21C7C22107.9°109.5°
C7C21H21C109.5°109.5°
C7C21H21B109.5°109.5°
C7C21H21A109.5°109.5°
C7C22H22B109.5°109.5°
C7C22H22A109.5°109.5°
C7C22H22C109.5°109.5°
C2C23C24120.4°120.1°
C2C23C28121.7°120.1°
C23C24C25120.9°119.9°
C24C23C28117.9°119.8°
C23C24H24119.5°120.0°
C24C25C26120.2°120.1°
C25C24H24119.6°120.1°
C24C25H25119.9°120.0°
C25C26C27119.9°120.2°
C26C25H25119.9°119.9°
C25C26H26120.0°119.9°
C26C27C28120.2°120.1°
C27C26H26120.1°119.9°
C26C27H27119.9°119.9°
C27C28C23121.0°119.9°
C28C27H27119.9°120.0°
C27C28H28119.5°120.0°
O29C1C6116.7°120.2°
C1O29H29109.5°114.0°
C1C6H6119.8°120.0°
C8C13H13119.7°119.9°
C15C20H20119.7°120.1°
C23C28H28119.5°120.1°
H21CC21H21B109.5°109.5°
H21CC21H21A109.4°109.4°
H21BC21H21A109.4°109.5°
H22BC22H22A109.4°109.5°
H22BC22H22C109.5°109.5°
H22AC22H22C109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C1C2C3C23178.3°180.0°
C1C2C3C40.1°0.0°
C2C1C6C50.3°0.5°
C1C2C23C24162.8°50.1°
C2C1O29C6177.4°179.8°
C1C2C23C2818.6°129.7°
C1C2C3H3179.9°180.0°
C2C1C6H6179.7°179.9°
C2C1O29H29180.0°90.0°
C2C3C4H3180.0°179.9°
C2C3C4C50.2°0.0°
C2C3C4C7175.4°180.0°
C3C2C23C2419.0°130.0°
C3C2C1O29177.0°180.0°
C3C2C1C60.3°0.2°
C3C2C23C28159.6°50.2°
C3C4C5C7175.4°179.9°
C3C4C5C60.2°0.3°
C3C4C7C893.9°54.7°
C3C4C7C21142.5°174.7°
C3C4C7C2224.0°65.3°
C4C3C2C23178.2°180.0°
C3C4C5H5179.8°180.0°
C4C5C6H5180.0°179.7°
C5C4C7C881.5°125.4°
C5C4C7C2142.0°5.4°
C5C4C7C22160.6°114.6°
C4C5C6C10.0°0.5°
C5C4C3H3179.8°179.9°
C4C5C6H6180.0°179.9°
C6C5C4C7175.2°179.8°
C5C6C1O29177.2°179.7°
C5C6C1H6180.0°179.6°
C4C7C8C21122.8°120.0°
C4C7C8C22117.7°120.0°
C4C7C8C9103.2°56.8°
C4C7C21C22119.0°120.0°
C4C7C8C1378.1°123.3°
C7C4C3H34.6°0.0°
C7C4C5H54.8°0.1°
C4C7C21H21C180.0°60.0°
C4C7C21H21B60.0°180.0°
C4C7C21H21A60.0°60.0°
C4C7C22H22B180.0°60.0°
C4C7C22H22A60.0°180.0°
C4C7C22H22C60.0°60.0°
C7C8C9C13178.8°179.9°
C7C8C9C10178.3°179.5°
C7C8C13C12178.5°179.3°
C8C7C21C22120.2°120.0°
C7C8C13H131.5°0.1°
C8C7C21H21C59.1°180.0°
C8C7C21H21B60.9°60.0°
C8C7C21H21A179.1°60.0°
C8C7C22H22B62.9°60.0°
C8C7C22H22A177.1°60.0°
C8C7C22H22C57.1°180.0°
C7C8C9H91.7°0.1°
C8C9C10H9180.0°179.4°
C8C9C10C110.4°0.1°
C9C8C13C120.2°0.8°
C8C9C10C15175.6°179.7°
C9C8C7C2119.6°63.2°
C9C8C7C22139.1°176.8°
C9C8C13H13179.8°180.0°
C9C10C11C15175.8°179.8°
C9C10C11C120.0°0.2°
C9C10C11O14178.1°179.8°
C9C10C15C1641.4°49.7°
C10C9C8C130.5°0.6°
C9C10C15C20132.8°130.2°
C10C11C12O14178.1°180.0°
C10C11C12C130.2°0.0°
C11C10C15C16142.9°130.0°
C11C10C15C2042.9°50.0°
C10C11C12H12179.8°179.9°
C11C10C9H9179.6°179.5°
C10C11O14H14180.0°90.0°
C11C12C13H12180.0°179.9°
C12C11C10C15175.7°180.0°
C11C12C13C80.1°0.5°
C11C12C13H13179.9°179.7°
C12C11O14H141.9°90.0°
C13C12C11O14177.9°180.0°
C12C13C8H13180.0°179.2°
O14C11C10C152.3°0.0°
O14C11C12H122.1°0.1°
C10C15C16C20174.3°180.0°
C10C15C16C17174.0°179.5°
C10C15C20C19174.0°179.2°
C10C15C20H206.0°0.0°
C10C15C16H166.0°0.6°
C15C10C9H94.4°0.3°
C15C16C17H16180.0°179.9°
C15C16C17C180.2°0.0°
C16C15C20C190.3°0.8°
C15C16C17H17179.8°179.7°
C16C15C20H20179.7°179.9°
C16C17C18H17180.0°179.7°
C16C17C18C190.1°0.3°
C17C16C15C200.3°0.5°
C16C17C18H18179.9°179.7°
C17C18C19H18180.0°180.0°
C17C18C19C200.1°0.1°
C18C17C16H16179.8°180.0°
C17C18C19H19179.9°180.0°
C18C19C20H19180.0°179.9°
C18C19C20C150.2°0.5°
C19C18C17H17179.9°180.0°
C18C19C20H20179.8°179.8°
C19C20C15H20180.0°179.3°
C20C19C18H18179.9°180.0°
C21C7C8C13159.1°116.7°
C7C21H21CH21B120.0°120.0°
C7C21H21CH21A120.0°120.0°
C7C21H21BH21A120.0°120.0°
C21C7C22H22B59.4°180.0°
C21C7C22H22A60.6°60.0°
C21C7C22H22C179.4°60.0°
C22C7C8C1339.6°3.3°
C22C7C21H21C61.0°60.0°
C22C7C21H21B178.9°60.0°
C22C7C21H21A59.0°180.0°
C7C22H22BH22A120.0°120.0°
C7C22H22BH22C120.0°120.0°
C7C22H22AH22C120.0°120.0°
C2C23C24C28178.7°179.8°
C2C23C24C25178.7°180.0°
C2C23C28C27178.7°179.7°
C23C2C1O294.8°0.0°
C23C2C1C6177.9°179.8°
C23C2C3H31.8°0.0°
C2C23C24H241.3°0.1°
C2C23C28H281.3°0.2°
C23C24C25H24180.0°179.9°
C23C24C25C260.0°0.0°
C24C23C28C270.1°0.5°
C23C24C25H25180.0°180.0°
C24C23C28H28179.9°180.0°
C24C25C26H25180.0°180.0°
C24C25C26C270.1°0.0°
C25C24C23C280.1°0.2°
C24C25C26H26179.9°180.0°
C25C26C27H26180.0°180.0°
C25C26C27C280.1°0.2°
C26C25C24H24180.0°180.0°
C25C26C27H27179.9°180.0°
C26C27C28H27180.0°179.8°
C26C27C28C230.0°0.5°
C27C26C25H25179.9°180.0°
C26C27C28H28180.0°180.0°
C27C28C23H28180.0°179.5°
C28C27C26H26179.9°179.8°
O29C1C6H62.8°0.2°
C1C6C5H5180.0°179.7°
C6C1O29H292.6°90.2°
C8C13C12H12179.9°179.4°
C13C8C9H9179.5°180.0°
C20C15C16H16179.7°179.4°
C15C20C19H19179.8°179.4°
C28C23C24H24180.0°179.7°
C23C28C27H27180.0°179.7°
H5C5C6H60.0°0.2°
H13C13C12H120.1°0.2°
H17C17C16H160.2°0.4°
H17C17C18H180.1°0.1°
H20C20C19H190.2°0.2°
H21CC21H21BH21A120.0°120.0°
H22BC22H22AH22C120.0°120.0°
H24C24C25H250.0°0.1°
H18C18C19H190.1°0.0°
H25C25C26H260.0°0.0°
H26C26C27H270.1°0.0°
H27C27C28H280.0°0.2°

250835

PDB entries from 2026-03-18

PDB statisticsPDBj update infoContact PDBjnumon