A1IXW

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C7	sing	1.53Å	1.55Å
C3	C7	sing	1.53Å	1.55Å
C7	C6	sing	1.51Å	1.49Å
C5	C6	doub	1.35Å	1.39Å
C5	C4	sing	1.42Å	1.39Å
C6	N1	sing	1.37Å	1.45Å
O4	C4	doub	1.22Å	1.28Å
C4	N3	sing	1.35Å	1.41Å
N1	C1'	sing	1.47Å	1.50Å
N1	C2	sing	1.35Å	1.37Å
C1'	O4'	sing	1.44Å	1.45Å
C1'	C2'	sing	1.55Å	1.52Å
O4'	C4'	sing	1.44Å	1.43Å
N3	C2	sing	1.35Å	1.28Å
O2'	C2'	sing	1.43Å	1.45Å
C2	O2	doub	1.22Å	1.23Å
O3'	C3'	sing	1.43Å	1.44Å
C2'	C3'	sing	1.55Å	1.51Å
C4'	C3'	sing	1.54Å	1.53Å
C4'	C5'	sing	1.53Å	1.54Å
C5'	O5'	sing	1.43Å	1.42Å
O5'	P	sing	1.61Å	1.60Å
O2P	P	doub	1.48Å	1.51Å
P	O3P	sing	1.61Å	1.51Å
P	O1P	sing	1.61Å	1.50Å
C3	H1	sing	1.09Å	1.10Å
C3	H2	sing	1.09Å	1.10Å
C3	H3	sing	1.09Å	1.10Å
C5	H4	sing	1.08Å	1.08Å
O1P	H5	sing	0.97Å	0.95Å
O3P	H6	sing	0.97Å	0.95Å
C5'	H7	sing	1.09Å	1.10Å
C5'	H8	sing	1.09Å	1.10Å
C4'	H9	sing	1.09Å	1.10Å
C3'	H10	sing	1.09Å	1.10Å
O3'	H11	sing	0.97Å	0.95Å
C2'	H12	sing	1.09Å	1.10Å
O2'	H13	sing	0.97Å	0.95Å
C1'	H14	sing	1.09Å	1.10Å
C7	H15	sing	1.09Å	1.10Å
N3	H16	sing	0.97Å	1.00Å
C1	H17	sing	1.09Å	1.10Å
C1	H18	sing	1.09Å	1.10Å
C1	H19	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	C7	C3	107.3°	109.5°
C1	C7	C6	111.7°	109.5°
C1	C7	H15	109.0°	109.5°
C7	C1	H17	109.5°	109.5°
C7	C1	H18	109.4°	109.5°
C7	C1	H19	109.5°	109.5°
C3	C7	C6	109.8°	109.5°
C7	C3	H1	109.5°	109.4°
C7	C3	H2	109.4°	109.4°
C7	C3	H3	109.5°	109.4°
C3	C7	H15	109.1°	109.4°
C7	C6	C5	118.8°	120.1°
C7	C6	N1	119.0°	120.2°
C6	C7	H15	109.8°	109.5°
C6	C5	C4	116.6°	119.1°
C5	C6	N1	121.9°	119.7°
C6	C5	H4	121.7°	120.5°
C5	C4	O4	122.0°	120.3°
C5	C4	N3	119.9°	119.4°
C4	C5	H4	121.7°	120.4°
C6	N1	C1'	122.8°	119.7°
C6	N1	C2	116.2°	120.6°
O4	C4	N3	118.1°	120.3°
C4	N3	C2	122.6°	120.2°
C4	N3	H16	118.7°	119.9°
C1'	N1	C2	121.0°	119.7°
N1	C1'	O4'	109.9°	110.4°
N1	C1'	C2'	119.4°	110.3°
N1	C1'	H14	107.4°	110.3°
N1	C2	N3	122.6°	121.0°
N1	C2	O2	117.2°	119.5°
O4'	C1'	C2'	104.5°	104.8°
C1'	O4'	C4'	110.8°	105.3°
O4'	C1'	H14	108.0°	110.4°
C1'	C2'	O2'	111.9°	110.6°
C1'	C2'	C3'	105.2°	104.0°
C1'	C2'	H12	110.0°	110.5°
C2'	C1'	H14	107.2°	110.4°
O4'	C4'	C3'	107.0°	104.8°
O4'	C4'	C5'	105.8°	110.4°
O4'	C4'	H9	110.7°	110.5°
N3	C2	O2	119.7°	119.5°
C2	N3	H16	118.7°	119.9°
O2'	C2'	C3'	108.4°	110.5°
O2'	C2'	H12	111.0°	110.5°
C2'	O2'	H13	109.5°	114.0°
O3'	C3'	C2'	114.9°	110.6°
O3'	C3'	C4'	110.0°	110.5°
O3'	C3'	H10	110.5°	110.4°
C3'	O3'	H11	109.5°	114.0°
C2'	C3'	C4'	102.3°	104.1°
C2'	C3'	H10	109.5°	110.5°
C3'	C2'	H12	110.1°	110.5°
C3'	C4'	C5'	114.5°	110.3°
C3'	C4'	H9	109.5°	110.4°
C4'	C3'	H10	109.3°	110.5°
C4'	C5'	O5'	105.1°	109.5°
C4'	C5'	H7	110.5°	109.4°
C4'	C5'	H8	110.5°	109.5°
C5'	C4'	H9	109.3°	110.3°
C5'	O5'	P	121.6°	123.0°
O5'	C5'	H7	110.6°	109.4°
O5'	C5'	H8	110.6°	109.5°
O5'	P	O2P	105.8°	109.4°
O5'	P	O3P	108.5°	109.5°
O5'	P	O1P	101.2°	109.5°
O2P	P	O3P	113.9°	109.5°
O2P	P	O1P	112.7°	109.5°
O3P	P	O1P	113.5°	109.5°
P	O3P	H6	109.5°	114.0°
P	O1P	H5	109.5°	114.0°
H1	C3	H2	109.5°	109.5°
H1	C3	H3	109.4°	109.5°
H2	C3	H3	109.5°	109.5°
H7	C5'	H8	109.5°	109.5°
H17	C1	H18	109.5°	109.4°
H17	C1	H19	109.5°	109.5°
H18	C1	H19	109.5°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C1	C7	C3	C6	121.5°	120.0°
C1	C7	C3	H15	118.0°	120.0°
C1	C7	C6	H15	121.1°	120.0°
C1	C7	C6	C5	22.5°	94.6°
C1	C7	C6	N1	162.7°	85.4°
C1	C7	C3	H1	180.0°	173.4°
C1	C7	C3	H2	60.0°	66.5°
C1	C7	C3	H3	60.0°	53.4°
C7	C1	H17	H18	120.0°	120.0°
C7	C1	H17	H19	120.0°	120.1°
C7	C1	H18	H19	120.0°	120.0°
C3	C7	C6	H15	120.0°	120.0°
C3	C7	C6	C5	96.4°	25.4°
C3	C7	C6	N1	78.4°	154.6°
C7	C3	H1	H2	120.0°	120.0°
C7	C3	H1	H3	120.0°	119.9°
C7	C3	H2	H3	120.0°	119.9°
C3	C7	C1	H17	180.0°	55.6°
C3	C7	C1	H18	60.0°	175.6°
C3	C7	C1	H19	60.0°	64.5°
C7	C6	C5	N1	174.6°	180.0°
C7	C6	C5	C4	176.1°	180.0°
C7	C6	N1	C1'	1.6°	0.0°
C7	C6	N1	C2	178.9°	179.7°
C6	C7	C3	H1	58.5°	53.4°
C6	C7	C3	H2	61.5°	173.4°
C6	C7	C3	H3	178.5°	66.6°
C7	C6	C5	H4	3.9°	0.1°
C6	C7	C1	H17	59.6°	175.6°
C6	C7	C1	H18	179.6°	64.4°
C6	C7	C1	H19	60.4°	55.6°
C6	C5	C4	H4	180.0°	179.9°
C6	C5	C4	O4	177.1°	180.0°
C6	C5	C4	N3	1.5°	0.2°
C5	C6	N1	C1'	176.2°	180.0°
C5	C6	N1	C2	4.3°	0.2°
C5	C6	C7	H15	143.6°	145.4°
C4	C5	C6	N1	1.4°	0.0°
C5	C4	O4	N3	178.6°	179.8°
C5	C4	N3	C2	1.5°	0.2°
C5	C4	N3	H16	178.5°	180.0°
C6	N1	C1'	C2	179.5°	179.8°
C6	N1	C1'	O4'	118.1°	128.3°
C6	N1	C1'	C2'	121.3°	116.3°
C6	N1	C2	N3	4.4°	0.2°
C6	N1	C2	O2	176.3°	179.7°
N1	C6	C5	H4	178.6°	179.9°
C6	N1	C1'	H14	0.8°	6.1°
N1	C6	C7	H15	41.6°	34.6°
O4	C4	N3	C2	177.1°	180.0°
O4	C4	C5	H4	2.9°	0.0°
O4	C4	N3	H16	2.9°	0.2°
C4	N3	C2	N1	1.6°	0.0°
C4	N3	C2	H16	180.0°	179.8°
C4	N3	C2	O2	173.4°	179.9°
N3	C4	C5	H4	178.5°	179.9°
N1	C1'	O4'	C2'	129.2°	118.8°
N1	C1'	O4'	H14	116.9°	122.2°
N1	C1'	C2'	H14	122.2°	122.2°
N1	C1'	O4'	C4'	140.4°	159.3°
C1'	N1	C2	N3	176.1°	180.0°
N1	C1'	C2'	O2'	91.9°	98.5°
C1'	N1	C2	O2	4.2°	0.0°
N1	C1'	C2'	C3'	150.5°	142.8°
N1	C1'	C2'	H12	31.9°	24.2°
C2	N1	C1'	O4'	62.4°	51.9°
C2	N1	C1'	C2'	58.2°	63.5°
N1	C2	N3	O2	171.7°	180.0°
C2	N1	C1'	H14	179.7°	174.2°
N1	C2	N3	H16	178.4°	179.8°
O4'	C1'	C2'	H14	114.5°	118.9°
O4'	C1'	C2'	O2'	144.8°	142.7°
O4'	C1'	C2'	C3'	27.2°	24.0°
C1'	O4'	C4'	C3'	9.1°	40.5°
C1'	O4'	C4'	C5'	113.4°	159.4°
C1'	O4'	C4'	H9	128.3°	78.4°
O4'	C1'	C2'	H12	91.4°	94.6°
C2'	C1'	O4'	C4'	11.2°	40.5°
C1'	C2'	O2'	C3'	115.6°	114.7°
C1'	C2'	O2'	H12	123.3°	122.7°
C1'	C2'	C3'	O3'	87.2°	118.7°
C1'	C2'	C3'	H12	118.5°	118.6°
C1'	C2'	C3'	C4'	32.0°	0.0°
C1'	C2'	C3'	H10	147.8°	118.7°
C1'	C2'	O2'	H13	180.0°	176.1°
O4'	C4'	C3'	O3'	97.1°	142.8°
O4'	C4'	C3'	C2'	25.5°	24.0°
O4'	C4'	C3'	C5'	116.9°	118.9°
O4'	C4'	C3'	H9	120.0°	119.0°
O4'	C4'	C5'	H9	119.2°	122.4°
O4'	C4'	C5'	O5'	175.2°	69.6°
O4'	C4'	C5'	H7	65.4°	50.3°
O4'	C4'	C5'	H8	55.9°	170.4°
O4'	C4'	C3'	H10	141.4°	94.7°
C4'	O4'	C1'	H14	102.7°	78.4°
O2'	C2'	C3'	O3'	32.7°	0.1°
O2'	C2'	C3'	H12	121.6°	122.6°
O2'	C2'	C3'	C4'	151.8°	118.8°
O2'	C2'	C3'	H10	92.3°	122.6°
O2'	C2'	C1'	H14	30.3°	23.8°
O2	C2	N3	H16	6.6°	0.3°
O3'	C3'	C2'	C4'	119.1°	118.7°
O3'	C3'	C2'	H10	125.1°	122.6°
O3'	C3'	C4'	H10	121.5°	122.6°
O3'	C3'	C4'	C5'	146.1°	98.4°
O3'	C3'	C4'	H9	23.0°	23.8°
O3'	C3'	C2'	H12	154.3°	122.7°
C2'	C3'	C4'	H10	115.9°	118.7°
C2'	C3'	C4'	C5'	91.4°	142.9°
C2'	C3'	C4'	H9	145.5°	95.0°
C2'	C3'	O3'	H11	180.0°	65.3°
C3'	C2'	O2'	H13	64.4°	61.4°
C3'	C2'	C1'	H14	87.2°	94.9°
C3'	C4'	C5'	H9	123.2°	122.2°
C3'	C4'	C5'	O5'	67.2°	175.0°
C3'	C4'	C5'	H7	52.1°	65.1°
C3'	C4'	C5'	H8	173.5°	55.0°
C4'	C3'	O3'	H11	65.3°	180.0°
C4'	C3'	C2'	H12	86.5°	118.6°
C4'	C5'	O5'	H7	119.3°	119.9°
C4'	C5'	O5'	H8	119.3°	120.0°
C4'	C5'	O5'	P	173.7°	179.9°
C4'	C5'	H7	H8	122.0°	120.0°
C5'	C4'	C3'	H10	24.5°	24.2°
C5'	O5'	P	O2P	71.3°	55.0°
C5'	O5'	P	O3P	51.3°	175.0°
C5'	O5'	P	O1P	170.9°	65.0°
O5'	C5'	H7	H8	122.0°	120.0°
O5'	C5'	C4'	H9	56.0°	52.8°
O5'	P	O2P	O3P	119.1°	120.0°
O5'	P	O2P	O1P	109.7°	120.0°
O5'	P	O3P	O1P	111.6°	120.0°
O5'	P	O1P	H5	112.6°	60.0°
O5'	P	O3P	H6	117.6°	180.0°
P	O5'	C5'	H7	67.0°	60.0°
P	O5'	C5'	H8	54.4°	60.0°
O2P	P	O3P	O1P	130.8°	120.0°
O2P	P	O1P	H5	0.0°	180.0°
O2P	P	O3P	H6	0.0°	60.0°
O3P	P	O1P	H5	131.4°	60.0°
O1P	P	O3P	H6	130.8°	60.0°
H1	C3	H2	H3	120.0°	120.1°
H1	C3	C7	H15	62.0°	66.6°
H2	C3	C7	H15	178.0°	53.5°
H3	C3	C7	H15	58.0°	173.4°
H7	C5'	C4'	H9	175.3°	172.7°
H8	C5'	C4'	H9	63.3°	67.2°
H9	C4'	C3'	H10	98.6°	146.4°
H10	C3'	O3'	H11	55.5°	57.4°
H10	C3'	C2'	H12	29.3°	0.1°
H12	C2'	O2'	H13	56.7°	61.2°
H12	C2'	C1'	H14	154.2°	146.5°
H15	C7	C1	H17	61.9°	64.4°
H15	C7	C1	H18	58.1°	55.6°
H15	C7	C1	H19	178.1°	175.6°
H17	C1	H18	H19	120.0°	119.9°

Release date:	2026-07-15
Definition date:	2025-01-03
Last modified:	2026-07-10
Release status:	REL
Processing site:	PDBE
Derived from:	9HVT