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SummaryGeometryRelated PDB entries

A1IJ9

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O13P12doub1.48Å1.52Å
O14P12sing1.61Å1.51Å
O15P12sing1.61Å1.50Å
P12C04sing1.82Å1.87Å
O11C10sing1.36Å1.40Å
C04N03sing1.46Å1.45Å
C04C05sing1.51Å1.52Å
N03C02sing1.35Å1.45Å
C10C05doub1.39Å1.39ÅAromatic
C10C09sing1.39Å1.38ÅAromatic
C05C06sing1.38Å1.38ÅAromatic
C17S18sing1.70Å1.74ÅAromatic
C17C16doub1.34Å1.38ÅAromatic
S18C19sing1.76Å1.73ÅAromatic
C02C16sing1.47Å1.54Å
C02O01doub1.22Å1.19Å
C16C24sing1.46Å1.41ÅAromatic
C09C08doub1.38Å1.38ÅAromatic
C19C24doub1.39Å1.38ÅAromatic
C19C20sing1.40Å1.39ÅAromatic
C24C23sing1.41Å1.41ÅAromatic
C20C21doub1.38Å1.39ÅAromatic
C23C22doub1.37Å1.38ÅAromatic
C06C07doub1.38Å1.39ÅAromatic
C21C22sing1.39Å1.38ÅAromatic
C08C07sing1.38Å1.39ÅAromatic
C04H1sing1.09Å1.10Å
C06H2sing1.08Å1.08Å
C07H3sing1.08Å1.08Å
C08H4sing1.08Å1.08Å
C09H5sing1.08Å1.08Å
C17H6sing1.08Å1.08Å
C20H7sing1.08Å1.08Å
C21H8sing1.08Å1.08Å
C22H9sing1.08Å1.08Å
C23H10sing1.08Å1.08Å
N03H11sing0.97Å1.00Å
O11H12sing0.97Å0.95Å
O14H13sing0.97Å0.95Å
O15H14sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O13P12O14109.2°109.5°
O13P12O15108.9°109.5°
O13P12C04106.4°109.5°
O14P12O15109.2°109.5°
O14P12C04113.1°109.5°
P12O14H13109.5°114.0°
O15P12C04110.1°109.4°
P12O15H14109.5°113.9°
P12C04N03101.7°109.5°
P12C04C05112.6°109.5°
P12C04H1106.6°109.5°
O11C10C05120.3°120.0°
O11C10C09119.0°120.1°
C10O11H12109.5°114.1°
N03C04C05113.2°109.5°
C04N03C02124.2°120.0°
N03C04H1111.6°109.5°
C04N03H11117.9°120.0°
C04C05C10120.6°120.1°
C04C05C06119.6°120.0°
C05C04H1110.6°109.4°
N03C02C16118.3°120.0°
N03C02O01119.9°120.0°
C02N03H11117.9°120.0°
C05C10C09120.6°119.9°
C10C05C06119.8°119.9°
C10C09C08119.7°120.0°
C10C09H5120.2°120.0°
C05C06C07119.6°120.1°
C05C06H2120.2°120.0°
S18C17C16105.6°112.2°
C17S18C1997.4°93.0°
S18C17H6127.2°123.9°
C17C16C02120.7°123.0°
C17C16C24115.6°113.9°
C16C17H6127.2°123.9°
S18C19C24106.1°109.8°
S18C19C20133.3°130.5°
C16C02O01121.7°120.0°
C02C16C24123.6°123.0°
C16C24C19115.3°111.1°
C16C24C23126.0°129.8°
C09C08C07119.9°120.0°
C09C08H4120.0°119.9°
C08C09H5120.1°120.1°
C24C19C20120.6°119.7°
C19C24C23118.7°119.2°
C19C20C21120.2°120.3°
C19C20H7119.9°119.9°
C24C23C22120.9°120.3°
C24C23H10119.6°119.9°
C20C21C22120.0°120.2°
C21C20H7119.9°119.8°
C20C21H8120.0°119.9°
C23C22C21119.7°120.4°
C23C22H9120.2°119.8°
C22C23H10119.5°119.8°
C06C07C08120.4°120.1°
C07C06H2120.2°119.9°
C06C07H3119.8°120.0°
C22C21H8120.0°119.9°
C21C22H9120.1°119.8°
C08C07H3119.8°119.9°
C07C08H4120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O13P12O14O15118.9°120.0°
O13P12O14C04118.3°120.0°
O13P12O15C04116.3°120.0°
O13P12C04N0364.2°64.8°
O13P12C04C05174.3°55.2°
O13P12C04H152.9°175.2°
O13P12O14H130.0°60.0°
O13P12O15H140.0°64.9°
O14P12O15C04124.6°120.0°
O14P12C04N03175.9°175.3°
O14P12C04C0554.5°64.7°
O14P12C04H167.0°55.2°
O14P12O15H14119.1°175.1°
O15P12C04N0353.6°55.3°
O15P12C04C0567.9°175.3°
O15P12C04H1170.6°64.8°
O15P12O14H13118.9°179.9°
P12C04N03C05121.0°120.0°
P12C04N03H1113.4°120.1°
P12C04C05H1119.2°120.0°
P12C04N03C02130.3°104.6°
P12C04C05C1056.6°95.3°
P12C04C05C06124.9°85.0°
P12C04N03H1149.8°75.4°
C04P12O14H13118.3°60.0°
C04P12O15H14116.3°55.1°
O11C10C05C040.8°0.0°
O11C10C05C09180.0°179.7°
O11C10C05C06179.3°179.8°
O11C10C09C08179.9°179.7°
O11C10C09H50.1°0.0°
N03C04C05H1126.1°120.0°
C04N03C02H11180.0°179.9°
N03C04C05C10171.3°144.7°
N03C04C05C0610.2°35.0°
C04N03C02C16176.6°174.9°
C04N03C02O014.5°4.8°
C05C04N03C02108.7°135.4°
C04C05C10C06178.5°179.7°
C04C05C10C09179.2°179.7°
C04C05C06C07179.3°180.0°
C04C05C06H20.7°0.0°
C05C04N03H1171.3°44.6°
N03C02C16C1722.6°0.6°
N03C02C16O01178.9°179.7°
N03C02C16C24154.2°179.7°
C02N03C04H116.9°15.5°
C05C10C09C080.1°0.6°
C10C05C06C070.7°0.3°
C10C05C04H162.6°24.7°
C10C05C06H2179.3°179.7°
C05C10C09H5179.9°179.7°
C05C10O11H12180.0°90.0°
C09C10C05C060.7°0.5°
C10C09C08H5180.0°179.7°
C10C09C08C070.3°0.4°
C10C09C08H4179.7°179.7°
C09C10O11H120.0°89.7°
C05C06C07H2180.0°180.0°
C05C06C07C080.3°0.0°
C06C05C04H1115.9°155.0°
C05C06C07H3179.7°180.0°
S18C17C16H6180.0°179.9°
S18C17C16C02178.7°180.0°
S18C17C16C241.7°0.3°
C17S18C19C240.3°0.0°
C17S18C19C20179.9°179.8°
C16C17S18C190.8°0.2°
C17C16C02C24176.8°179.6°
C17C16C02O01156.3°179.7°
C17C16C24C192.1°0.3°
C17C16C24C23179.3°179.8°
S18C19C24C161.3°0.1°
S18C19C24C20179.6°179.9°
S18C19C24C23180.0°179.9°
S18C19C20C21179.6°179.9°
C19S18C17H6179.2°180.0°
S18C19C20H70.4°0.2°
C02C16C24C19179.0°180.0°
C02C16C24C232.4°0.1°
C02C16C17H61.3°0.2°
C16C02N03H113.4°5.1°
O01C02C16C2426.9°0.0°
O01C02N03H11175.5°175.2°
C16C24C19C23178.7°180.0°
C16C24C19C20179.0°180.0°
C16C24C23C22178.8°179.9°
C24C16C17H6178.3°179.8°
C16C24C23H101.2°0.0°
C09C08C07C060.2°0.1°
C09C08C07H4180.0°179.9°
C09C08C07H3179.7°179.9°
C24C19C20C210.1°0.1°
C19C24C23C220.3°0.0°
C24C19C20H7179.9°180.0°
C19C24C23H10179.7°179.9°
C20C19C24C230.3°0.0°
C19C20C21H7180.0°179.9°
C19C20C21C220.2°0.1°
C19C20C21H8179.8°179.9°
C24C23C22H10180.0°179.9°
C24C23C22C210.0°0.0°
C24C23C22H9180.0°179.9°
C20C21C22C230.2°0.0°
C20C21C22H8180.0°180.0°
C20C21C22H9179.7°180.0°
C23C22C21H9180.0°179.9°
C23C22C21H8179.8°180.0°
C06C07C08H3180.0°180.0°
C06C07C08H4179.8°180.0°
C22C21C20H7179.8°180.0°
C21C22C23H10180.0°179.9°
C08C07C06H2179.7°179.9°
C07C08C09H5179.7°180.0°
H1C04N03H11163.1°164.6°
H2C06C07H30.3°0.0°
H3C07C08H40.2°0.0°
H4C08C09H50.3°0.1°
H7C20C21H80.2°0.0°
H8C21C22H90.2°0.1°
H9C22C23H100.0°0.0°

251174

PDB entries from 2026-03-25

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