English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

A1IGO

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N1	C1	sing	1.35Å	1.33Å
C1	C2	sing	1.46Å	1.51Å
C2	S1	sing	1.76Å	1.74Å	Aromatic
S1	C3	sing	1.71Å	1.73Å	Aromatic
C3	C4	doub	1.33Å	1.44Å	Aromatic
C2	C5	doub	1.38Å	1.45Å	Aromatic
C5	C6	sing	1.48Å	1.48Å
C6	C7	doub	1.39Å	1.39Å	Aromatic
C7	C8	sing	1.38Å	1.39Å	Aromatic
C8	C9	doub	1.38Å	1.38Å	Aromatic
C9	C10	sing	1.38Å	1.38Å	Aromatic
C10	C11	doub	1.38Å	1.39Å	Aromatic
C1	O1	doub	1.22Å	1.23Å
C4	C5	sing	1.39Å	1.45Å	Aromatic
C6	C11	sing	1.39Å	1.39Å	Aromatic
N1	H1	sing	0.97Å	1.00Å
N1	H2	sing	0.97Å	1.00Å
C4	H4	sing	1.08Å	1.08Å
C7	H5	sing	1.08Å	1.08Å
C8	H6	sing	1.08Å	1.08Å
C10	H8	sing	1.08Å	1.08Å
C3	H3	sing	1.08Å	1.08Å
C9	H7	sing	1.08Å	1.08Å
C11	H9	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N1	C1	C2	118.4°	120.0°
N1	C1	O1	121.9°	120.0°
C1	N1	H1	120.0°	120.0°
C1	N1	H2	120.0°	120.0°
C1	C2	S1	120.3°	125.5°
C1	C2	C5	129.6°	125.5°
C2	C1	O1	119.7°	120.0°
C2	S1	C3	94.7°	91.8°
S1	C2	C5	110.0°	109.0°
S1	C3	C4	109.1°	111.3°
S1	C3	H3	125.4°	124.3°
C3	C4	C5	114.3°	115.1°
C3	C4	H4	122.9°	122.5°
C4	C3	H3	125.5°	124.4°
C2	C5	C6	127.8°	123.6°
C2	C5	C4	110.9°	112.8°
C5	C6	C7	121.4°	120.1°
C6	C5	C4	121.2°	123.6°
C5	C6	C11	120.7°	120.1°
C6	C7	C8	120.8°	119.8°
C7	C6	C11	117.9°	119.8°
C6	C7	H5	119.6°	120.1°
C7	C8	C9	120.5°	120.1°
C8	C7	H5	119.6°	120.1°
C7	C8	H6	119.7°	119.9°
C8	C9	C10	119.6°	120.3°
C9	C8	H6	119.8°	120.0°
C8	C9	H7	120.2°	119.8°
C9	C10	C11	120.3°	120.1°
C9	C10	H8	119.8°	119.9°
C10	C9	H7	120.2°	119.9°
C10	C11	C6	121.0°	119.9°
C11	C10	H8	119.9°	120.0°
C10	C11	H9	119.5°	120.0°
C5	C4	H4	122.9°	122.5°
C6	C11	H9	119.5°	120.1°
H1	N1	H2	120.0°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N1	C1	C2	O1	178.1°	180.0°
N1	C1	C2	S1	9.1°	0.0°
N1	C1	C2	C5	174.1°	180.0°
C1	N1	H1	H2	180.0°	179.7°
C1	C2	S1	C5	177.4°	180.0°
C1	C2	S1	C3	168.1°	179.8°
C1	C2	C5	C6	8.4°	0.0°
C1	C2	C5	C4	169.6°	180.0°
C2	C1	N1	H1	178.0°	0.0°
C2	C1	N1	H2	2.0°	179.7°
C2	S1	C3	C4	8.4°	0.3°
S1	C2	C5	C6	174.5°	180.0°
S1	C2	C1	O1	169.0°	180.0°
S1	C2	C5	C4	7.5°	0.0°
C2	S1	C3	H3	171.5°	179.9°
S1	C3	C4	H3	180.0°	179.8°
C3	S1	C2	C5	9.3°	0.2°
S1	C3	C4	C5	5.5°	0.4°
S1	C3	C4	H4	174.5°	179.9°
C3	C4	C5	C2	1.4°	0.2°
C3	C4	C5	C6	179.5°	179.8°
C3	C4	C5	H4	180.0°	179.8°
C2	C5	C6	C4	177.7°	180.0°
C2	C5	C6	C7	51.6°	130.0°
C5	C2	C1	O1	7.8°	0.0°
C2	C5	C6	C11	129.7°	50.3°
C2	C5	C4	H4	178.6°	180.0°
C5	C6	C7	C11	178.7°	179.7°
C5	C6	C7	C8	179.4°	180.0°
C5	C6	C11	C10	179.2°	179.7°
C6	C5	C4	H4	0.5°	0.0°
C5	C6	C7	H5	0.6°	0.1°
C5	C6	C11	H9	0.8°	0.1°
C6	C7	C8	H5	180.0°	179.9°
C6	C7	C8	C9	1.4°	0.1°
C7	C6	C11	C10	0.5°	0.6°
C7	C6	C5	C4	130.7°	50.0°
C6	C7	C8	H6	178.6°	180.0°
C7	C6	C11	H9	179.5°	179.7°
C7	C8	C9	H6	180.0°	179.9°
C7	C8	C9	C10	1.8°	0.1°
C8	C7	C6	C11	0.7°	0.3°
C7	C8	C9	H7	178.2°	180.0°
C8	C9	C10	H7	180.0°	179.9°
C8	C9	C10	C11	1.6°	0.4°
C9	C8	C7	H5	178.6°	180.0°
C8	C9	C10	H8	178.4°	179.8°
C9	C10	C11	H8	180.0°	179.4°
C9	C10	C11	C6	0.9°	0.7°
C10	C9	C8	H6	178.2°	179.9°
C9	C10	C11	H9	179.1°	179.7°
C10	C11	C6	H9	180.0°	179.6°
C11	C10	C9	H7	178.4°	179.7°
O1	C1	N1	H1	0.0°	180.0°
O1	C1	N1	H2	180.0°	0.3°
C4	C5	C6	C11	48.0°	129.7°
C5	C4	C3	H3	174.5°	179.9°
C11	C6	C7	H5	179.3°	179.8°
C6	C11	C10	H8	179.1°	180.0°
H4	C4	C3	H3	5.5°	0.1°
H5	C7	C8	H6	1.4°	0.1°
H6	C8	C9	H7	1.8°	0.1°
H8	C10	C9	H7	1.6°	0.3°
H8	C10	C11	H9	0.9°	0.3°

247947

PDB entries from 2026-01-21

PDB statistics

PDBj update info

Contact PDBj

numon