Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

A1IB3

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C5C8sing1.53Å1.51Å
C5C3sing1.53Å1.53Å
C8C3sing1.53Å1.53Å
NAAN3doub1.29Å1.31ÅAromatic
NAAN2sing1.29Å1.30ÅAromatic
O5'C5'sing1.43Å1.44Å
N3C4sing1.34Å1.35ÅAromatic
C3N1sing1.47Å1.47Å
C9C5'sing1.53Å1.51Å
C9N2sing1.46Å1.48Å
C9C1'sing1.53Å1.52Å
C7C5'sing1.53Å1.53Å
C7C6sing1.51Å1.49Å
C7O2'sing1.43Å1.42Å
N1C6sing1.35Å1.44Å
N1C2sing1.46Å1.46Å
N2C17sing1.35Å1.32ÅAromatic
C6O6doub1.21Å1.21Å
C2'C1'sing1.53Å1.51Å
C2'O2'sing1.43Å1.42Å
C2'C3'sing1.53Å1.52Å
C2C1sing1.53Å1.53Å
C1'O4'sing1.43Å1.43Å
C4C17doub1.36Å1.37ÅAromatic
C4C11sing1.48Å1.48Å
C12C11doub1.39Å1.39ÅAromatic
C12C13sing1.38Å1.38ÅAromatic
F1C13sing1.35Å1.38Å
O3'C3'sing1.43Å1.42Å
C11C14sing1.39Å1.39ÅAromatic
C1OP3sing1.43Å1.44Å
C13C16doub1.39Å1.38ÅAromatic
C14C15doub1.38Å1.38ÅAromatic
C16C15sing1.39Å1.38ÅAromatic
C16F3sing1.35Å1.38Å
C15F2sing1.35Å1.38Å
C5H9sing1.09Å1.10Å
C5H10sing1.09Å1.10Å
C7H11sing1.09Å1.10Å
C8H8sing1.09Å1.10Å
C8H7sing1.09Å1.10Å
C17H16sing1.08Å1.08Å
OP3H1sing0.97Å0.95Å
C1H3sing1.09Å1.10Å
C1H2sing1.09Å1.10Å
C2H5sing1.09Å1.10Å
C2H4sing1.09Å1.10Å
C3H6sing1.09Å1.10Å
C5'H12sing1.09Å1.10Å
C9H13sing1.09Å1.10Å
C12H14sing1.08Å1.08Å
C14H15sing1.08Å1.08Å
O5'H17sing0.97Å0.95Å
C2'H18sing1.09Å1.10Å
C3'H19sing1.09Å1.10Å
C3'H20sing1.09Å1.10Å
O3'H21sing0.97Å0.95Å
C1'H22sing1.09Å1.10Å
O4'H23sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C8C5C360.4°60.0°
C5C8C360.5°60.0°
C8C5H9119.9°117.5°
C8C5H10119.9°117.5°
C5C8H8119.9°117.5°
C5C8H7119.9°117.5°
C5C3C859.1°60.0°
C5C3N1118.9°117.5°
C3C5H9119.9°117.5°
C3C5H10119.9°117.5°
C5C3H6115.6°117.5°
C8C3N1118.2°117.5°
C3C8H8119.9°117.5°
C3C8H7119.9°117.5°
C8C3H6115.7°117.5°
N3NAAN2107.6°110.5°
NAAN3C4108.7°108.8°
NAAN2C9115.1°125.8°
NAAN2C17111.5°108.5°
O5'C5'C9109.3°109.6°
O5'C5'C7109.8°109.5°
O5'C5'H12109.9°109.5°
C5'O5'H17109.5°114.0°
N3C4C17106.8°106.2°
N3C4C11125.7°126.9°
C3N1C6121.7°120.0°
C3N1C2112.9°120.0°
N1C3H6116.8°115.6°
C5'C9N2111.9°109.6°
C5'C9C1'110.0°109.0°
C9C5'C7110.3°109.2°
C9C5'H12108.8°109.5°
C5'C9H13108.5°109.6°
N2C9C1'109.0°109.5°
C9N2C17133.5°125.8°
N2C9H13109.0°109.5°
C9C1'C2'110.0°109.2°
C9C1'O4'109.6°109.5°
C1'C9H13108.4°109.6°
C9C1'H22108.8°109.5°
C5'C7C6112.9°109.5°
C5'C7O2'110.6°109.4°
C5'C7H11108.6°109.5°
C7C5'H12108.7°109.5°
C6C7O2'105.6°109.5°
C7C6N1116.6°120.0°
C7C6O6120.6°120.0°
C6C7H11109.1°109.5°
C7O2'C2'113.9°114.1°
O2'C7H11110.1°109.5°
C6N1C2123.0°120.0°
N1C6O6122.6°120.0°
N1C2C1109.1°109.5°
N1C2H5109.6°109.5°
N1C2H4109.6°109.5°
N2C17C4105.4°106.0°
N2C17H16127.3°127.0°
C1'C2'O2'109.0°109.4°
C1'C2'C3'111.8°109.5°
C2'C1'O4'109.5°109.5°
C1'C2'H18108.8°109.5°
C2'C1'H22108.9°109.5°
O2'C2'C3'108.5°109.5°
O2'C2'H18110.1°109.5°
C2'C3'O3'109.2°109.5°
C3'C2'H18108.7°109.4°
C2'C3'H19109.6°109.5°
C2'C3'H20109.5°109.5°
C2C1OP3110.1°109.5°
C2C1H3109.3°109.5°
C2C1H2109.3°109.5°
C1C2H5109.6°109.5°
C1C2H4109.5°109.5°
O4'C1'H22110.0°109.6°
C1'O4'H23109.5°114.0°
C17C4C11127.5°126.9°
C4C17H16127.3°127.0°
C4C11C12118.9°120.1°
C4C11C14120.4°120.1°
C11C12C13119.4°120.0°
C12C11C14120.6°119.8°
C11C12H14120.3°120.0°
C12C13F1120.5°120.0°
C12C13C16119.8°120.0°
C13C12H14120.3°120.0°
F1C13C16119.7°120.0°
O3'C3'H19109.5°109.5°
O3'C3'H20109.6°109.5°
C3'O3'H21109.5°114.0°
C11C14C15119.5°120.0°
C11C14H15120.3°120.0°
C1OP3H1109.5°114.0°
OP3C1H3109.3°109.4°
OP3C1H2109.3°109.5°
C13C16C15121.0°120.2°
C13C16F3118.8°119.9°
C14C15C16119.6°120.0°
C14C15F2120.5°120.0°
C15C14H15120.2°120.0°
C15C16F3120.1°119.9°
C16C15F2119.9°120.0°
H9C5H10109.5°115.6°
H8C8H7109.5°115.5°
H3C1H2109.5°109.4°
H5C2H4109.5°109.4°
H19C3'H20109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C8C5C3H9109.6°107.5°
C8C5C3H10109.6°107.4°
C5C8C3H8109.6°107.5°
C5C8C3H7109.6°107.5°
C8C5C3N1107.4°107.5°
C8C5H9H10144.6°145.7°
C5C8H8H7144.5°145.6°
C8C5C3H6105.8°107.5°
C5C3N1H6146.4°145.7°
C5C3N1C672.7°174.0°
C5C3N1C2124.4°5.8°
C3C5H9H10144.5°145.8°
C8C3N1H6145.3°145.7°
C8C3N1C6141.1°117.4°
C8C3N1C256.1°62.9°
C3C8H8H7144.5°145.8°
N3NAAN2C9179.5°179.9°
N3NAAN2C171.1°0.0°
NAAN3C4C170.3°0.0°
NAAN3C4C11177.6°179.9°
N2NAAN3C40.5°0.0°
NAAN2C9C5'122.9°145.0°
NAAN2C9C17177.9°179.9°
NAAN2C9C1'115.3°95.5°
NAAN2C17C41.3°0.0°
NAAN2C17H16178.8°180.0°
NAAN2C9H132.9°24.8°
O5'C5'C9C7120.8°119.9°
O5'C5'C9H12120.0°120.1°
O5'C5'C9N265.5°63.2°
O5'C5'C9C1'173.2°176.9°
O5'C5'C7H12120.2°120.1°
O5'C5'C7C668.0°62.5°
O5'C5'C7O2'174.0°177.6°
O5'C5'C7H1153.1°57.6°
O5'C5'C9H1354.7°57.0°
N3C4C17N20.9°0.0°
N3C4C17C11177.3°179.9°
N3C4C11C1218.4°180.0°
N3C4C11C14158.9°0.1°
N3C4C17H16179.1°180.0°
C3N1C6C76.5°4.6°
C3N1C6C2161.1°179.7°
C3N1C6O6169.2°175.3°
C3N1C2C156.6°93.2°
N1C3C5H9143.0°145.0°
N1C3C5H102.2°0.1°
N1C3C8H81.1°0.0°
N1C3C8H7141.9°145.1°
C3N1C2H5176.6°26.8°
C3N1C2H463.3°146.7°
C5'C9N2C1'121.9°119.5°
C5'C9N2H13120.0°120.2°
C5'C9C1'H13118.5°119.9°
C9C5'C7H12119.3°119.9°
C9C5'C7C6171.5°177.6°
C9C5'C7O2'53.5°57.6°
C5'C9N2C1759.2°35.0°
C5'C9C1'C2'55.4°57.0°
C5'C9C1'O4'65.0°62.9°
C9C5'C7H1167.4°62.4°
C9C5'O5'H17180.0°173.5°
C5'C9C1'H22174.7°176.9°
N2C9C1'H13118.5°120.2°
N2C9C5'C7173.7°176.8°
N2C9C1'C2'178.4°176.8°
N2C9C1'O4'58.0°56.9°
C9N2C17C4179.2°179.9°
C9N2C17H160.8°0.1°
N2C9C5'H1254.5°56.9°
N2C9C1'H2262.3°63.3°
C1'C9C5'C752.4°57.0°
C1'C9N2C1762.6°84.6°
C9C1'C2'O4'120.4°119.9°
C9C1'C2'H22119.2°119.9°
C9C1'C2'O2'58.7°57.6°
C9C1'C2'C3'178.6°177.6°
C9C1'O4'H22119.6°120.1°
C1'C9C5'H1266.7°62.9°
C9C1'C2'H1861.3°62.4°
C9C1'O4'H23180.0°179.9°
C5'C7C6O2'120.9°119.9°
C5'C7C6H11120.8°120.0°
C5'C7O2'H11120.0°120.0°
C5'C7C6N1169.0°90.2°
C5'C7C6O615.2°89.8°
C5'C7O2'C2'59.7°61.1°
C7C5'C9H1366.1°63.0°
C7C5'O5'H1758.9°66.8°
C6C7O2'H11117.6°120.1°
C7C6N1O6175.7°180.0°
C7C6N1C2167.6°175.6°
C6C7O2'C2'177.9°178.9°
C6C7C5'H1252.3°57.7°
O2'C7C6N170.1°149.9°
O2'C7C6O6105.7°30.2°
C7O2'C2'C1'62.1°61.1°
C7O2'C2'C3'175.9°178.8°
O2'C7C5'H1265.8°62.3°
C7O2'C2'H1857.1°58.9°
C6N1C2C1106.0°86.5°
N1C6C7H1148.2°29.8°
C6N1C2H514.0°153.5°
C6N1C2H4134.1°33.6°
C6N1C3H673.7°28.3°
C2N1C6O68.1°4.4°
N1C2C1H5119.9°120.1°
N1C2C1H4120.0°120.0°
N1C2C1OP351.9°65.3°
N1C2C1H3172.0°54.7°
N1C2C1H268.2°174.7°
N1C2H5H4120.2°120.0°
C2N1C3H689.2°151.4°
N2C17C4H16180.0°180.0°
N2C17C4C11178.2°179.9°
C17N2C9H13179.2°155.2°
O6C6C7H11136.0°150.2°
C1'C2'O2'C3'122.0°120.0°
C1'C2'O2'H18119.2°120.0°
C1'C2'C3'H18120.1°120.0°
C2'C1'O4'H22119.7°120.2°
C1'C2'C3'O3'177.9°175.0°
C2'C1'C9H1363.1°62.9°
C1'C2'C3'H1962.1°55.0°
C1'C2'C3'H2057.9°65.0°
C2'C1'O4'H2359.3°60.4°
O2'C2'C3'H18119.7°120.0°
O2'C2'C1'O4'61.7°62.3°
O2'C2'C3'O3'57.7°65.0°
C2'O2'C7H1160.3°58.8°
O2'C2'C3'H19177.6°175.0°
O2'C2'C3'H2062.3°55.0°
O2'C2'C1'H22177.9°177.5°
C3'C2'C1'O4'58.2°57.7°
C2'C3'O3'H19120.0°120.0°
C2'C3'O3'H20119.9°120.0°
C2'C3'H19H20120.1°120.0°
C2'C3'O3'H21180.0°180.0°
C3'C2'C1'H2262.2°62.5°
C2C1OP3H3120.1°120.0°
C2C1OP3H2120.1°120.1°
C2C1OP3H1180.0°180.0°
C2C1H3H2119.7°120.0°
C1C2H5H4120.1°119.9°
O4'C1'C9H13176.5°177.2°
O4'C1'C2'H18178.3°177.7°
C17C4C11C12164.8°0.2°
C17C4C11C1417.9°179.9°
C4C11C12C14177.3°179.9°
C4C11C12C13178.1°180.0°
C4C11C14C15178.3°179.9°
C11C4C17H161.8°0.1°
C4C11C12H141.9°0.2°
C4C11C14H151.8°0.0°
C11C12C13H14180.0°179.8°
C11C12C13F1179.8°179.7°
C11C12C13C160.1°0.1°
C12C11C14C151.0°0.0°
C12C11C14H15179.0°179.9°
C12C13F1C16179.7°179.7°
C13C12C11C140.8°0.1°
C12C13C16C150.7°0.0°
C12C13C16F3179.4°179.9°
F1C13C16C15179.6°179.8°
F1C13C16F30.3°0.3°
F1C13C12H140.2°0.2°
O3'C3'C2'H1862.0°54.9°
O3'C3'H19H20120.1°120.0°
C11C14C15H15180.0°179.9°
C11C14C15C160.4°0.1°
C11C14C15F2180.0°180.0°
C14C11C12H14179.2°179.9°
OP3C1H3H2119.7°120.0°
OP3C1C2H568.0°54.8°
OP3C1C2H4171.9°174.7°
C13C16C15C140.5°0.1°
C13C16C15F3179.9°179.9°
C13C16C15F2179.1°180.0°
C16C13C12H14179.9°179.9°
C14C15C16F2179.6°180.0°
C14C15C16F3179.7°180.0°
C16C15C14H15179.6°180.0°
F3C16C15F20.7°0.0°
F2C15C14H150.0°0.1°
H9C5C8H8140.8°145.0°
H9C5C8H70.0°0.1°
H9C5C3H63.8°0.1°
H10C5C8H80.1°0.1°
H10C5C8H7140.9°144.9°
H10C5C3H6144.6°145.0°
H11C7C5'H12173.3°177.7°
H8C8C3H6144.6°145.1°
H7C8C3H63.8°0.0°
H1OP3C1H359.9°60.0°
H1OP3C1H259.9°59.9°
H3C1C2H552.1°174.8°
H3C1C2H468.0°65.3°
H2C1C2H5171.9°65.2°
H2C1C2H451.8°54.7°
H12C5'C9H13174.8°177.1°
H12C5'O5'H1760.6°53.3°
H13C9C1'H2256.1°57.0°
H18C2'C3'H1958.0°65.0°
H18C2'C3'H20178.0°175.0°
H18C2'C1'H2257.9°57.5°
H19C3'O3'H2160.0°60.0°
H20C3'O3'H2160.0°60.0°
H22C1'O4'H2360.4°59.8°

247536

PDB entries from 2026-01-14

PDB statisticsPDBj update infoContact PDBjnumon