A1I2I

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N1	C2	sing	1.35Å	1.36Å
N1	C6	sing	1.36Å	1.35Å
N1	C1'	sing	1.46Å	1.43Å
C2	N3	sing	1.33Å	1.38Å
C2	O2	doub	1.22Å	1.19Å
N3	C4	doub	1.33Å	1.33Å
C4	C5	sing	1.41Å	1.37Å
C4	N4	sing	1.38Å	1.46Å
C5	C6	doub	1.35Å	1.37Å
C5	C5A	sing	1.51Å	1.56Å
C1'	C2'	sing	1.54Å	1.51Å
C1'	O4'	sing	1.44Å	1.46Å
C2'	C3'	sing	1.55Å	1.46Å
C3'	C4'	sing	1.55Å	1.48Å
C3'	O3'	sing	1.43Å	1.47Å
C4'	O4'	sing	1.44Å	1.44Å
C4'	C5'	sing	1.53Å	1.54Å
C5'	O5'	sing	1.43Å	1.41Å
O5'	PA	sing	1.61Å	1.67Å
PA	O1A	sing	1.61Å	1.51Å
PA	O2A	doub	1.48Å	1.51Å
PA	O3A	sing	1.61Å	1.67Å
O3A	PB	sing	1.61Å	1.65Å
PB	O1B	doub	1.48Å	1.51Å
PB	O2B	sing	1.61Å	1.51Å
PB	O3B	sing	1.61Å	1.67Å
O3B	PG	sing	1.61Å	1.65Å
PG	O1G	sing	1.61Å	1.52Å
PG	O2G	sing	1.61Å	1.51Å
PG	O3G	doub	1.48Å	1.51Å
C1'	H1'	sing	1.09Å	1.10Å
C2'	H2'1	sing	1.09Å	1.10Å
C2'	H2'2	sing	1.09Å	1.10Å
C3'	H3'	sing	1.09Å	1.10Å
C4'	H4'	sing	1.09Å	1.10Å
C5'	H5'2	sing	1.09Å	1.10Å
C5'	H5'1	sing	1.09Å	1.10Å
C5A	H5A3	sing	1.09Å	1.10Å
C5A	H5A2	sing	1.09Å	1.10Å
C5A	H5A1	sing	1.09Å	1.10Å
C6	H1	sing	1.08Å	1.08Å
N4	HN42	sing	0.97Å	1.00Å
N4	HN41	sing	0.97Å	1.00Å
O1A	H2	sing	0.97Å	0.95Å
O1G	H4	sing	0.97Å	0.95Å
O2B	H3	sing	0.97Å	0.95Å
O2G	H5	sing	0.97Å	0.95Å
O3'	HO3'	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	N1	C6	119.9°	120.3°
C2	N1	C1'	120.1°	119.9°
N1	C2	N3	120.3°	121.1°
N1	C2	O2	120.2°	119.5°
C6	N1	C1'	120.0°	119.8°
N1	C6	C5	119.7°	119.3°
N1	C6	H1	120.2°	120.4°
N1	C1'	C2'	110.0°	109.8°
N1	C1'	O4'	110.1°	109.9°
N1	C1'	H1'	109.9°	110.0°
N3	C2	O2	119.4°	119.4°
C2	N3	C4	120.0°	120.7°
N3	C4	C5	119.7°	119.6°
N3	C4	N4	120.2°	120.2°
C5	C4	N4	120.0°	120.2°
C4	C5	C6	120.4°	118.9°
C4	C5	C5A	119.8°	120.6°
C4	N4	HN42	120.0°	120.0°
C4	N4	HN41	120.0°	120.0°
C6	C5	C5A	119.8°	120.5°
C5	C6	H1	120.1°	120.3°
C5	C5A	H5A3	109.5°	109.4°
C5	C5A	H5A2	109.5°	109.5°
C5	C5A	H5A1	109.4°	109.5°
C2'	C1'	O4'	108.6°	107.3°
C1'	C2'	C3'	103.3°	104.2°
C2'	C1'	H1'	108.7°	109.8°
C1'	C2'	H2'1	111.0°	110.5°
C1'	C2'	H2'2	111.0°	110.5°
C1'	O4'	C4'	106.2°	107.0°
O4'	C1'	H1'	109.4°	109.9°
C2'	C3'	C4'	108.4°	102.1°
C2'	C3'	O3'	109.4°	110.9°
C3'	C2'	H2'1	111.0°	110.5°
C3'	C2'	H2'2	111.0°	110.5°
C2'	C3'	H3'	110.1°	110.9°
C4'	C3'	O3'	109.3°	110.9°
C3'	C4'	O4'	109.0°	103.5°
C3'	C4'	C5'	109.7°	110.6°
C4'	C3'	H3'	109.8°	110.9°
C3'	C4'	H4'	109.7°	110.6°
O3'	C3'	H3'	109.8°	110.8°
C3'	O3'	HO3'	109.5°	114.0°
O4'	C4'	C5'	109.3°	110.6°
O4'	C4'	H4'	110.3°	110.7°
C4'	C5'	O5'	109.8°	109.5°
C5'	C4'	H4'	108.9°	110.6°
C4'	C5'	H5'2	109.4°	109.5°
C4'	C5'	H5'1	109.4°	109.5°
C5'	O5'	PA	117.9°	123.0°
O5'	C5'	H5'2	109.4°	109.5°
O5'	C5'	H5'1	109.4°	109.5°
O5'	PA	O1A	109.5°	109.5°
O5'	PA	O2A	109.2°	109.5°
O5'	PA	O3A	109.5°	109.5°
O1A	PA	O2A	109.6°	109.5°
O1A	PA	O3A	109.7°	109.5°
PA	O1A	H2	109.5°	114.0°
O2A	PA	O3A	109.3°	109.4°
PA	O3A	PB	123.7°	134.0°
O3A	PB	O1B	109.7°	109.5°
O3A	PB	O2B	109.3°	109.5°
O3A	PB	O3B	109.9°	109.5°
O1B	PB	O2B	109.5°	109.5°
O1B	PB	O3B	109.3°	109.4°
O2B	PB	O3B	109.1°	109.5°
PB	O2B	H3	109.5°	114.0°
PB	O3B	PG	123.5°	134.0°
O3B	PG	O1G	109.5°	109.5°
O3B	PG	O2G	109.3°	109.5°
O3B	PG	O3G	109.5°	109.4°
O1G	PG	O2G	109.5°	109.5°
O1G	PG	O3G	109.6°	109.5°
PG	O1G	H4	109.5°	114.0°
O2G	PG	O3G	109.4°	109.5°
PG	O2G	H5	109.5°	114.0°
H2'1	C2'	H2'2	109.5°	110.6°
H5'2	C5'	H5'1	109.5°	109.4°
H5A3	C5A	H5A2	109.5°	109.5°
H5A3	C5A	H5A1	109.5°	109.5°
H5A2	C5A	H5A1	109.5°	109.4°
HN42	N4	HN41	120.0°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	N1	C6	C1'	179.8°	180.0°
N1	C2	N3	O2	179.9°	179.8°
N1	C2	N3	C4	0.1°	0.2°
C2	N1	C6	C5	0.1°	0.5°
C2	N1	C1'	C2'	132.9°	65.1°
C2	N1	C1'	O4'	107.5°	52.8°
C2	N1	C1'	H1'	13.1°	173.9°
C2	N1	C6	H1	179.9°	179.8°
C6	N1	C2	N3	0.1°	0.0°
C6	N1	C2	O2	180.0°	179.8°
N1	C6	C5	C4	0.1°	0.8°
N1	C6	C5	H1	180.0°	179.3°
N1	C6	C5	C5A	179.9°	179.2°
C6	N1	C1'	C2'	47.0°	115.0°
C6	N1	C1'	O4'	72.7°	127.2°
C6	N1	C1'	H1'	166.7°	6.0°
C1'	N1	C2	N3	179.9°	180.0°
C1'	N1	C2	O2	0.2°	0.2°
C1'	N1	C6	C5	179.9°	179.5°
N1	C1'	C2'	O4'	120.6°	119.5°
N1	C1'	C2'	H1'	120.5°	121.1°
N1	C1'	O4'	H1'	120.9°	121.2°
N1	C1'	C2'	C3'	142.2°	121.5°
N1	C1'	O4'	C4'	137.8°	145.9°
N1	C1'	C2'	H2'1	98.8°	119.9°
N1	C1'	C2'	H2'2	23.1°	2.8°
C1'	N1	C6	H1	0.1°	0.2°
C2	N3	C4	C5	0.1°	0.1°
C2	N3	C4	N4	179.9°	179.4°
O2	C2	N3	C4	180.0°	180.0°
N3	C4	C5	N4	180.0°	179.4°
N3	C4	C5	C6	0.1°	0.6°
N3	C4	C5	C5A	179.9°	179.4°
N3	C4	N4	HN42	0.0°	179.4°
N3	C4	N4	HN41	180.0°	0.7°
C4	C5	C6	C5A	180.0°	180.0°
C4	C5	C5A	H5A3	180.0°	0.0°
C4	C5	C5A	H5A2	60.0°	120.0°
C4	C5	C5A	H5A1	60.0°	120.0°
C4	C5	C6	H1	179.9°	179.9°
C5	C4	N4	HN42	180.0°	0.0°
C5	C4	N4	HN41	0.0°	180.0°
N4	C4	C5	C6	179.9°	180.0°
N4	C4	C5	C5A	0.1°	0.0°
C4	N4	HN42	HN41	180.0°	179.9°
C6	C5	C5A	H5A3	0.0°	180.0°
C6	C5	C5A	H5A2	120.0°	60.0°
C6	C5	C5A	H5A1	120.0°	60.0°
C5	C5A	H5A3	H5A2	120.0°	120.0°
C5	C5A	H5A3	H5A1	120.0°	120.0°
C5	C5A	H5A2	H5A1	120.0°	120.0°
C5A	C5	C6	H1	0.1°	0.1°
C2'	C1'	O4'	H1'	118.5°	119.4°
C1'	C2'	C3'	H2'1	119.0°	118.6°
C1'	C2'	C3'	H2'2	119.0°	118.7°
C1'	C2'	C3'	C4'	17.5°	20.9°
C1'	C2'	C3'	O3'	101.6°	139.1°
C2'	C1'	O4'	C4'	17.2°	26.5°
C1'	C2'	H2'1	H2'2	122.8°	122.7°
C1'	C2'	C3'	H3'	137.6°	97.3°
O4'	C1'	C2'	C3'	21.6°	2.0°
C1'	O4'	C4'	C3'	6.0°	40.1°
C1'	O4'	C4'	C5'	125.8°	158.6°
O4'	C1'	C2'	H2'1	140.6°	120.7°
O4'	C1'	C2'	H2'2	97.5°	116.7°
C1'	O4'	C4'	H4'	114.5°	78.5°
C2'	C3'	C4'	O3'	119.2°	118.2°
C2'	C3'	C4'	H3'	120.3°	118.2°
C2'	C3'	O3'	H3'	120.9°	123.7°
C2'	C3'	C4'	O4'	7.8°	37.0°
C2'	C3'	C4'	C5'	111.8°	155.5°
C3'	C2'	C1'	H1'	97.4°	117.4°
C3'	C2'	H2'1	H2'2	122.9°	122.6°
C2'	C3'	C4'	H4'	128.7°	81.5°
C2'	C3'	O3'	HO3'	180.0°	61.4°
C4'	C3'	O3'	H3'	120.5°	123.6°
C3'	C4'	O4'	C5'	119.8°	118.5°
C3'	C4'	O4'	H4'	120.5°	118.5°
C3'	C4'	C5'	H4'	120.0°	122.9°
C3'	C4'	C5'	O5'	56.9°	175.0°
C4'	C3'	C2'	H2'1	136.5°	97.8°
C4'	C3'	C2'	H2'2	101.5°	139.6°
C3'	C4'	C5'	H5'2	63.1°	54.9°
C3'	C4'	C5'	H5'1	177.0°	65.0°
C4'	C3'	O3'	HO3'	61.4°	174.1°
O3'	C3'	C4'	O4'	111.4°	155.2°
O3'	C3'	C4'	C5'	129.0°	86.3°
O3'	C3'	C2'	H2'1	17.4°	20.5°
O3'	C3'	C2'	H2'2	139.4°	102.2°
O3'	C3'	C4'	H4'	9.5°	36.7°
O4'	C4'	C5'	H4'	120.5°	123.0°
O4'	C4'	C5'	O5'	176.4°	70.9°
C4'	O4'	C1'	H1'	101.3°	92.9°
O4'	C4'	C3'	H3'	128.1°	81.2°
O4'	C4'	C5'	H5'2	56.3°	169.0°
O4'	C4'	C5'	H5'1	63.6°	49.1°
C4'	C5'	O5'	H5'2	120.0°	120.0°
C4'	C5'	O5'	H5'1	120.0°	120.0°
C4'	C5'	O5'	PA	125.8°	180.0°
C5'	C4'	C3'	H3'	8.5°	37.3°
C4'	C5'	H5'2	H5'1	119.9°	120.0°
C5'	O5'	PA	O1A	177.1°	65.0°
C5'	O5'	PA	O2A	63.0°	55.0°
C5'	O5'	PA	O3A	56.7°	175.0°
O5'	C5'	C4'	H4'	63.1°	52.1°
O5'	C5'	H5'2	H5'1	119.9°	120.0°
O5'	PA	O1A	O2A	119.8°	120.0°
O5'	PA	O1A	O3A	120.2°	120.0°
O5'	PA	O2A	O3A	119.8°	120.0°
O5'	PA	O3A	PB	68.2°	160.0°
PA	O5'	C5'	H5'2	5.8°	60.0°
PA	O5'	C5'	H5'1	114.1°	60.0°
O5'	PA	O1A	H2	119.8°	60.0°
O1A	PA	O2A	O3A	120.3°	120.0°
O1A	PA	O3A	PB	52.0°	80.0°
O2A	PA	O3A	PB	172.2°	40.0°
O2A	PA	O1A	H2	0.0°	180.0°
PA	O3A	PB	O1B	83.8°	40.0°
PA	O3A	PB	O2B	36.3°	80.0°
PA	O3A	PB	O3B	156.1°	159.9°
O3A	PA	O1A	H2	120.1°	60.0°
O3A	PB	O1B	O2B	120.0°	120.0°
O3A	PB	O1B	O3B	120.5°	120.0°
O3A	PB	O2B	O3B	120.2°	120.0°
O3A	PB	O3B	PG	112.5°	165.1°
O3A	PB	O2B	H3	120.2°	60.0°
O1B	PB	O2B	O3B	119.6°	120.0°
O1B	PB	O3B	PG	127.1°	45.1°
O1B	PB	O2B	H3	0.0°	180.0°
O2B	PB	O3B	PG	7.3°	74.9°
PB	O3B	PG	O1G	179.7°	79.9°
PB	O3B	PG	O2G	60.4°	160.0°
PB	O3B	PG	O3G	59.4°	40.0°
O3B	PB	O2B	H3	119.6°	60.0°
O3B	PG	O1G	O2G	119.8°	120.0°
O3B	PG	O1G	O3G	120.2°	119.9°
O3B	PG	O2G	O3G	120.0°	119.9°
O3B	PG	O1G	H4	120.2°	60.0°
O3B	PG	O2G	H5	119.9°	180.0°
O1G	PG	O2G	O3G	120.1°	120.0°
O1G	PG	O2G	H5	120.2°	60.0°
O2G	PG	O1G	H4	120.0°	60.0°
O3G	PG	O1G	H4	0.0°	179.9°
O3G	PG	O2G	H5	0.0°	60.0°
H1'	C1'	C2'	H2'1	21.6°	1.2°
H1'	C1'	C2'	H2'2	143.6°	123.9°
H2'1	C2'	C3'	H3'	103.4°	144.1°
H2'2	C2'	C3'	H3'	18.6°	21.4°
H3'	C3'	C4'	H4'	111.0°	160.3°
H3'	C3'	O3'	HO3'	59.1°	62.2°
H4'	C4'	C5'	H5'2	176.9°	68.0°
H4'	C4'	C5'	H5'1	56.9°	172.1°
H5A3	C5A	H5A2	H5A1	120.0°	120.0°

Release date:	2025-04-30
Definition date:	2025-02-17
Last modified:	2025-04-25
Release status:	REL
Processing site:	PDBE
Derived from:	9HFT