English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry PCM/PTM Related PDB entries

A1H8R

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	B2	sing	0.00Å	1.48Å
B2	O3	sing	0.00Å	1.53Å
O3	C4	sing	0.00Å	1.43Å
C4	C5	sing	0.00Å	1.54Å
C5	N6	sing	0.00Å	1.48Å
C4	C7	sing	0.00Å	1.50Å
C7	C8	doub	0.00Å	1.39Å	Aromatic
C8	C9	sing	0.00Å	1.37Å	Aromatic
C9	C10	doub	0.00Å	1.38Å	Aromatic
C10	C11	sing	0.00Å	1.37Å	Aromatic
C11	C12	doub	0.00Å	1.39Å	Aromatic
C12	B2	sing	0.00Å	1.58Å
C12	C7	sing	0.00Å	1.39Å	Aromatic
C11	H11	sing	0.00Å	1.08Å
C9	H9	sing	0.00Å	1.08Å
C8	H8	sing	0.00Å	1.08Å
C4	H4	sing	0.00Å	1.10Å
C10	H10	sing	0.00Å	1.08Å
C5	H5A	sing	0.00Å	1.10Å
C5	H5B	sing	0.00Å	1.10Å
N6	H6B	sing	0.00Å	1.00Å
N6	H6C	sing	0.00Å	1.00Å
O1	H1	sing	0.00Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	B2	O3	107.5°	90.0°
O1	B2	C12	111.1°	90.0°
B2	O1	H1	109.5°	90.0°
B2	O3	C4	112.7°	90.0°
O3	B2	C12	100.7°	90.0°
O3	C4	C5	113.7°	90.0°
O3	C4	C7	105.9°	90.0°
O3	C4	H4	107.8°	90.0°
C4	C5	N6	130.5°	90.0°
C5	C4	C7	115.4°	90.0°
C5	C4	H4	106.6°	90.0°
C4	C5	H5A	104.0°	90.0°
C4	C5	H5B	104.0°	90.0°
N6	C5	H5A	104.0°	90.0°
N6	C5	H5B	104.0°	90.0°
C5	N6	H6B	109.5°	90.0°
C5	N6	H6C	109.5°	90.0°
C4	C7	C8	127.0°	90.0°
C4	C7	C12	111.4°	90.0°
C7	C4	H4	107.0°	90.0°
C7	C8	C9	119.6°	90.0°
C8	C7	C12	121.6°	90.0°
C7	C8	H8	120.2°	90.0°
C8	C9	C10	119.6°	90.0°
C8	C9	H9	120.2°	90.0°
C9	C8	H8	120.2°	90.0°
C9	C10	C11	120.5°	90.0°
C10	C9	H9	120.2°	90.0°
C9	C10	H10	119.7°	90.0°
C10	C11	C12	121.9°	90.0°
C10	C11	H11	119.0°	90.0°
C11	C10	H10	119.8°	90.0°
C11	C12	B2	133.9°	90.0°
C11	C12	C7	116.7°	90.0°
C12	C11	H11	119.0°	90.0°
B2	C12	C7	109.3°	90.0°
H5A	C5	H5B	109.4°	90.0°
H6B	N6	H6C	109.5°	90.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	B2	O3	C12	116.3°	90.0°
O1	B2	O3	C4	116.5°	90.0°
O1	B2	C12	C11	64.4°	90.0°
O1	B2	C12	C7	112.1°	90.0°
B2	O3	C4	C5	129.4°	90.0°
B2	O3	C4	C7	1.7°	90.0°
O3	B2	C12	C11	178.0°	90.0°
O3	B2	C12	C7	1.5°	90.0°
B2	O3	C4	H4	112.7°	90.0°
O3	B2	O1	H1	0.0°	90.0°
O3	C4	C5	C7	122.7°	90.0°
O3	C4	C5	H4	118.7°	90.0°
O3	C4	C5	N6	74.0°	90.0°
O3	C4	C7	H4	114.9°	90.0°
O3	C4	C7	C8	176.0°	90.0°
C4	O3	B2	C12	0.2°	90.0°
O3	C4	C7	C12	2.7°	90.0°
O3	C4	C5	H5A	48.7°	90.0°
O3	C4	C5	H5B	163.2°	90.0°
C4	C5	N6	H5A	122.7°	90.0°
C4	C5	N6	H5B	122.7°	90.0°
C5	C4	C7	H4	118.4°	90.0°
C5	C4	C7	C8	49.3°	90.0°
C5	C4	C7	C12	129.4°	90.0°
C4	C5	H5A	H5B	110.7°	90.0°
C4	C5	N6	H6B	180.0°	90.0°
C4	C5	N6	H6C	60.0°	90.0°
N6	C5	C4	C7	48.6°	90.0°
N6	C5	C4	H4	167.3°	90.0°
N6	C5	H5A	H5B	110.6°	90.0°
C5	N6	H6B	H6C	120.0°	90.0°
C4	C7	C8	C12	178.6°	90.0°
C4	C7	C8	C9	179.4°	90.0°
C4	C7	C12	C11	179.8°	90.0°
C4	C7	C12	B2	2.6°	90.0°
C4	C7	C8	H8	0.6°	90.0°
C7	C4	C5	H5A	171.3°	90.0°
C7	C4	C5	H5B	74.1°	90.0°
C7	C8	C9	H8	180.0°	90.0°
C7	C8	C9	C10	0.6°	90.0°
C8	C7	C12	C11	1.0°	90.0°
C8	C7	C12	B2	176.2°	90.0°
C7	C8	C9	H9	179.4°	90.0°
C8	C7	C4	H4	69.1°	90.0°
C8	C9	C10	H9	180.0°	90.0°
C8	C9	C10	C11	0.5°	90.0°
C9	C8	C7	C12	0.8°	90.0°
C8	C9	C10	H10	179.5°	90.0°
C9	C10	C11	H10	180.0°	90.0°
C9	C10	C11	C12	0.7°	90.0°
C9	C10	C11	H11	179.3°	90.0°
C10	C9	C8	H8	179.4°	90.0°
C10	C11	C12	H11	180.0°	90.0°
C10	C11	C12	B2	175.4°	90.0°
C10	C11	C12	C7	0.9°	90.0°
C11	C10	C9	H9	179.5°	90.0°
C11	C12	B2	C7	176.5°	90.0°
C12	C11	C10	H10	179.3°	90.0°
B2	C12	C11	H11	4.6°	90.0°
C12	B2	O1	H1	109.2°	90.0°
C7	C12	C11	H11	179.1°	90.0°
C12	C7	C8	H8	179.2°	90.0°
C12	C7	C4	H4	112.2°	90.0°
H11	C11	C10	H10	0.7°	90.0°
H9	C9	C8	H8	0.6°	90.0°
H9	C9	C10	H10	0.5°	90.0°
H4	C4	C5	H5A	70.0°	90.0°
H4	C4	C5	H5B	44.6°	90.0°
H5A	C5	N6	H6B	57.3°	90.0°
H5A	C5	N6	H6C	177.3°	90.0°
H5B	C5	N6	H6B	57.3°	90.0°
H5B	C5	N6	H6C	62.8°	90.0°

251174

PDB entries from 2026-03-25

PDB statistics

PDBj update info

Contact PDBj

numon