A1H2E
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N | CA | sing | 1.47Å | 1.46Å | |
OCS | CCT | sing | 1.36Å | 1.36Å | |
OCS | PAD | sing | 1.61Å | 1.59Å | |
CCU | CCT | doub | 1.39Å | 1.40Å | Aromatic |
CCU | CCV | sing | 1.38Å | 1.39Å | Aromatic |
CCT | CCY | sing | 1.39Å | 1.40Å | Aromatic |
CCV | CCW | doub | 1.38Å | 1.39Å | Aromatic |
CA | PAD | sing | 1.82Å | 1.83Å | |
CA | CB | sing | 1.53Å | 1.53Å | |
PAD | O1 | doub | 1.48Å | 1.50Å | |
CB | CG | sing | 1.53Å | 1.52Å | |
CCY | CCX | doub | 1.38Å | 1.39Å | Aromatic |
CG | CD | sing | 1.53Å | 1.53Å | |
CD | NE | sing | 1.46Å | 1.46Å | |
CCW | CCX | sing | 1.38Å | 1.39Å | Aromatic |
NE | CZ | sing | 1.37Å | 1.34Å | |
NH2 | CZ | doub | 1.33Å | 1.34Å | |
CZ | NH1 | sing | 1.33Å | 1.33Å | |
CA | HA | sing | 1.09Å | 1.10Å | |
CB | HB2 | sing | 1.09Å | 1.10Å | |
CB | HB3 | sing | 1.09Å | 1.10Å | |
CG | HG2 | sing | 1.09Å | 1.10Å | |
CG | HG3 | sing | 1.09Å | 1.10Å | |
CD | HD2 | sing | 1.09Å | 1.10Å | |
CD | HD3 | sing | 1.09Å | 1.10Å | |
CCU | H8 | sing | 1.08Å | 1.08Å | |
CCV | H9 | sing | 1.08Å | 1.08Å | |
CCW | H10 | sing | 1.08Å | 1.08Å | |
CCX | H11 | sing | 1.08Å | 1.08Å | |
CCY | H12 | sing | 1.08Å | 1.08Å | |
N | H | sing | 1.01Å | 1.00Å | |
N | H2 | sing | 1.01Å | 1.00Å | |
NE | HE | sing | 0.97Å | 1.00Å | |
NH1 | HH11 | sing | 0.97Å | 1.00Å | |
NH1 | HH12 | sing | 0.97Å | 1.00Å | |
NH2 | HH21 | sing | 0.97Å | 1.00Å | |
PAD | O2 | sing | 1.61Å | 49.18Å | |
O2 | C2 | sing | 1.36Å | 0.00Å | |
C2 | C3 | sing | 1.39Å | 0.00Å | Aromatic |
C3 | C4 | doub | 1.38Å | 0.00Å | Aromatic |
C4 | C5 | sing | 1.38Å | 0.00Å | Aromatic |
C5 | C6 | doub | 1.38Å | 0.00Å | Aromatic |
C6 | C7 | sing | 1.38Å | 0.00Å | Aromatic |
C7 | C2 | doub | 1.39Å | 0.00Å | Aromatic |
C3 | H15 | sing | 1.08Å | 0.00Å | |
C4 | H20 | sing | 1.08Å | 0.00Å | |
C5 | H21 | sing | 1.08Å | 0.00Å | |
C6 | H22 | sing | 1.08Å | 0.00Å | |
C7 | H23 | sing | 1.08Å | 0.00Å | |
NH2 | HH22 | sing | 0.97Å | 1.00Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
N | CA | PAD | 110.4° | 109.5° |
N | CA | CB | 108.0° | 109.5° |
N | CA | HA | 111.0° | 109.4° |
CA | N | H | 109.5° | 111.0° |
CA | N | H2 | 109.5° | 111.0° |
CCT | OCS | PAD | 123.1° | 114.0° |
OCS | CCT | CCU | 118.7° | 120.1° |
OCS | CCT | CCY | 120.8° | 120.0° |
OCS | PAD | CA | 110.8° | 109.4° |
OCS | PAD | O1 | 119.4° | 109.4° |
OCS | PAD | O2 | 149.4° | 109.5° |
CCT | CCU | CCV | 119.6° | 120.0° |
CCU | CCT | CCY | 120.5° | 119.9° |
CCT | CCU | H8 | 120.2° | 120.0° |
CCU | CCV | CCW | 119.7° | 120.0° |
CCV | CCU | H8 | 120.2° | 120.0° |
CCU | CCV | H9 | 120.1° | 120.0° |
CCT | CCY | CCX | 119.4° | 120.0° |
CCT | CCY | H12 | 120.3° | 120.1° |
CCV | CCW | CCX | 120.6° | 120.1° |
CCW | CCV | H9 | 120.2° | 120.0° |
CCV | CCW | H10 | 119.7° | 120.0° |
PAD | CA | CB | 110.7° | 109.5° |
CA | PAD | O1 | 117.2° | 109.5° |
PAD | CA | HA | 106.7° | 109.5° |
CA | PAD | O2 | 89.4° | 109.5° |
CA | CB | CG | 104.8° | 109.5° |
CB | CA | HA | 110.0° | 109.5° |
CA | CB | HB2 | 110.6° | 109.5° |
CA | CB | HB3 | 110.6° | 109.5° |
O1 | PAD | O2 | 31.2° | 109.5° |
CB | CG | CD | 110.2° | 109.5° |
CG | CB | HB2 | 110.6° | 109.4° |
CG | CB | HB3 | 110.6° | 109.4° |
CB | CG | HG2 | 109.3° | 109.5° |
CB | CG | HG3 | 109.3° | 109.5° |
CCY | CCX | CCW | 120.3° | 120.1° |
CCY | CCX | H11 | 119.9° | 120.0° |
CCX | CCY | H12 | 120.3° | 120.0° |
CG | CD | NE | 105.5° | 109.5° |
CD | CG | HG2 | 109.3° | 109.5° |
CD | CG | HG3 | 109.3° | 109.5° |
CG | CD | HD2 | 110.4° | 109.4° |
CG | CD | HD3 | 110.5° | 109.5° |
CD | NE | CZ | 123.8° | 120.0° |
NE | CD | HD2 | 110.4° | 109.5° |
NE | CD | HD3 | 110.5° | 109.5° |
CD | NE | HE | 118.1° | 120.0° |
CCX | CCW | H10 | 119.7° | 120.0° |
CCW | CCX | H11 | 119.8° | 119.9° |
NE | CZ | NH2 | 120.5° | 120.0° |
NE | CZ | NH1 | 118.6° | 120.0° |
CZ | NE | HE | 118.1° | 120.0° |
NH2 | CZ | NH1 | 120.9° | 120.0° |
CZ | NH2 | HH21 | 120.0° | 120.0° |
CZ | NH2 | HH22 | 120.0° | 120.0° |
CZ | NH1 | HH11 | 120.0° | 120.0° |
CZ | NH1 | HH12 | 120.0° | 120.0° |
HB2 | CB | HB3 | 109.5° | 109.5° |
HG2 | CG | HG3 | 109.5° | 109.4° |
HD2 | CD | HD3 | 109.5° | 109.4° |
H | N | H2 | 109.4° | 111.0° |
HH11 | NH1 | HH12 | 120.0° | 120.0° |
HH21 | NH2 | HH22 | 120.0° | 120.0° |
PAD | O2 | C2 | 90.0° | 114.0° |
O2 | C2 | C3 | 90.0° | 120.0° |
O2 | C2 | C7 | 90.0° | 120.1° |
C2 | C3 | C4 | 90.0° | 119.9° |
C3 | C2 | C7 | 90.0° | 119.9° |
C2 | C3 | H15 | 90.0° | 120.0° |
C3 | C4 | C5 | 90.0° | 120.1° |
C4 | C3 | H15 | 90.0° | 120.1° |
C3 | C4 | H20 | 90.0° | 119.9° |
C4 | C5 | C6 | 90.0° | 120.1° |
C5 | C4 | H20 | 90.0° | 120.0° |
C4 | C5 | H21 | 90.0° | 119.9° |
C5 | C6 | C7 | 90.0° | 120.1° |
C6 | C5 | H21 | 90.0° | 120.0° |
C5 | C6 | H22 | 90.0° | 120.0° |
C6 | C7 | C2 | 90.0° | 119.9° |
C7 | C6 | H22 | 90.0° | 119.9° |
C6 | C7 | H23 | 90.0° | 120.0° |
C2 | C7 | H23 | 90.0° | 120.1° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N | CA | PAD | OCS | 33.9° | 168.1° |
N | CA | PAD | CB | 119.5° | 120.0° |
N | CA | PAD | HA | 120.8° | 119.9° |
N | CA | CB | HA | 121.3° | 120.0° |
N | CA | PAD | O1 | 175.9° | 72.0° |
N | CA | CB | CG | 81.2° | 178.1° |
N | CA | CB | HB2 | 38.0° | 58.1° |
N | CA | CB | HB3 | 159.5° | 62.0° |
CA | N | H | H2 | 120.0° | 124.0° |
N | CA | PAD | O2 | 169.5° | 48.1° |
OCS | CCT | CCU | CCY | 179.8° | 179.7° |
OCS | CCT | CCU | CCV | 179.6° | 179.7° |
CCT | OCS | PAD | CA | 113.3° | 77.5° |
CCT | OCS | PAD | O1 | 27.7° | 162.6° |
OCS | CCT | CCY | CCX | 179.4° | 179.8° |
OCS | CCT | CCU | H8 | 0.4° | 0.3° |
OCS | CCT | CCY | H12 | 0.6° | 0.3° |
CCT | OCS | PAD | O2 | 15.1° | 42.6° |
PAD | OCS | CCT | CCU | 116.6° | 107.9° |
PAD | OCS | CCT | CCY | 63.2° | 71.8° |
OCS | PAD | CA | O1 | 142.0° | 119.9° |
OCS | PAD | CA | O2 | 156.5° | 120.0° |
OCS | PAD | CA | CB | 153.5° | 71.9° |
OCS | PAD | O1 | O2 | 167.7° | 120.0° |
OCS | PAD | CA | HA | 86.8° | 48.1° |
OCS | PAD | O2 | C2 | 90.0° | 85.1° |
CCT | CCU | CCV | H8 | 180.0° | 180.0° |
CCT | CCU | CCV | CCW | 0.1° | 0.0° |
CCU | CCT | CCY | CCX | 0.3° | 0.1° |
CCT | CCU | CCV | H9 | 179.9° | 180.0° |
CCU | CCT | CCY | H12 | 179.7° | 180.0° |
CCV | CCU | CCT | CCY | 0.2° | 0.0° |
CCU | CCV | CCW | H9 | 180.0° | 180.0° |
CCU | CCV | CCW | CCX | 0.1° | 0.0° |
CCU | CCV | CCW | H10 | 179.9° | 180.0° |
CCT | CCY | CCX | H12 | 180.0° | 179.9° |
CCT | CCY | CCX | CCW | 0.4° | 0.1° |
CCY | CCT | CCU | H8 | 179.8° | 180.0° |
CCT | CCY | CCX | H11 | 179.6° | 179.9° |
CCV | CCW | CCX | CCY | 0.2° | 0.1° |
CCV | CCW | CCX | H10 | 180.0° | 179.9° |
CCW | CCV | CCU | H8 | 180.0° | 180.0° |
CCV | CCW | CCX | H11 | 179.7° | 180.0° |
PAD | CA | CB | HA | 117.7° | 120.0° |
CA | PAD | O1 | O2 | 29.1° | 120.0° |
PAD | CA | CB | CG | 157.8° | 61.9° |
PAD | CA | CB | HB2 | 83.0° | 178.1° |
PAD | CA | CB | HB3 | 38.5° | 58.0° |
PAD | CA | N | H | 180.0° | 60.0° |
PAD | CA | N | H2 | 60.0° | 176.0° |
CA | PAD | O2 | C2 | 90.0° | 154.9° |
CB | CA | PAD | O1 | 64.6° | 48.1° |
CA | CB | CG | HB2 | 119.3° | 120.0° |
CA | CB | CG | HB3 | 119.2° | 120.0° |
CA | CB | CG | CD | 170.2° | 173.6° |
CA | CB | HB2 | HB3 | 122.2° | 120.0° |
CA | CB | CG | HG2 | 69.7° | 66.4° |
CA | CB | CG | HG3 | 50.1° | 53.5° |
CB | CA | N | H | 58.9° | 60.0° |
CB | CA | N | H2 | 178.8° | 63.9° |
CB | CA | PAD | O2 | 50.0° | 168.1° |
O1 | PAD | CA | HA | 55.1° | 168.1° |
O1 | PAD | O2 | C2 | 90.0° | 34.9° |
CB | CG | CD | HG2 | 120.1° | 120.0° |
CB | CG | CD | HG3 | 120.1° | 120.1° |
CB | CG | CD | NE | 177.6° | 180.0° |
CG | CB | CA | HA | 40.1° | 58.1° |
CG | CB | HB2 | HB3 | 122.2° | 120.0° |
CB | CG | HG2 | HG3 | 119.7° | 120.0° |
CB | CG | CD | HD2 | 63.0° | 60.0° |
CB | CG | CD | HD3 | 58.2° | 59.9° |
CCY | CCX | CCW | H11 | 180.0° | 179.9° |
CCY | CCX | CCW | H10 | 179.8° | 180.0° |
CG | CD | NE | HD2 | 119.3° | 120.0° |
CG | CD | NE | HD3 | 119.4° | 120.0° |
CG | CD | NE | CZ | 173.1° | 180.0° |
CD | CG | CB | HB2 | 51.0° | 53.5° |
CD | CG | CB | HB3 | 70.6° | 66.5° |
CD | CG | HG2 | HG3 | 119.6° | 120.0° |
CG | CD | HD2 | HD3 | 121.9° | 119.9° |
CG | CD | NE | HE | 6.9° | 0.0° |
CD | NE | CZ | HE | 180.0° | 180.0° |
CD | NE | CZ | NH2 | 2.9° | 180.0° |
CD | NE | CZ | NH1 | 179.6° | 0.0° |
NE | CD | CG | HG2 | 57.5° | 60.0° |
NE | CD | CG | HG3 | 62.3° | 59.9° |
NE | CD | HD2 | HD3 | 121.8° | 120.0° |
CCX | CCW | CCV | H9 | 179.9° | 180.0° |
CCW | CCX | CCY | H12 | 179.7° | 180.0° |
NE | CZ | NH2 | NH1 | 177.4° | 180.0° |
CZ | NE | CD | HD2 | 67.6° | 60.0° |
CZ | NE | CD | HD3 | 53.7° | 60.0° |
NE | CZ | NH1 | HH11 | 177.4° | 0.0° |
NE | CZ | NH1 | HH12 | 2.6° | 180.0° |
NE | CZ | NH2 | HH21 | 177.4° | 0.1° |
NE | CZ | NH2 | HH22 | 2.6° | 180.0° |
NH2 | CZ | NE | HE | 177.1° | 0.0° |
NH2 | CZ | NH1 | HH11 | 0.0° | 179.9° |
NH2 | CZ | NH1 | HH12 | 180.0° | 0.1° |
CZ | NH2 | HH21 | HH22 | 180.0° | 179.9° |
NH1 | CZ | NE | HE | 0.3° | 180.0° |
CZ | NH1 | HH11 | HH12 | 180.0° | 180.0° |
NH1 | CZ | NH2 | HH21 | 0.0° | 180.0° |
NH1 | CZ | NH2 | HH22 | 180.0° | 0.1° |
HA | CA | CB | HB2 | 159.4° | 61.9° |
HA | CA | CB | HB3 | 79.1° | 178.1° |
HA | CA | N | H | 61.9° | 180.0° |
HA | CA | N | H2 | 58.1° | 56.1° |
HA | CA | PAD | O2 | 69.7° | 71.9° |
HB2 | CB | CG | HG2 | 171.1° | 173.5° |
HB2 | CB | CG | HG3 | 69.2° | 66.6° |
HB3 | CB | CG | HG2 | 49.6° | 53.5° |
HB3 | CB | CG | HG3 | 169.3° | 173.5° |
HG2 | CG | CD | HD2 | 176.9° | 180.0° |
HG2 | CG | CD | HD3 | 61.9° | 60.1° |
HG3 | CG | CD | HD2 | 57.1° | 60.1° |
HG3 | CG | CD | HD3 | 178.4° | 180.0° |
HD2 | CD | NE | HE | 112.4° | 120.0° |
HD3 | CD | NE | HE | 126.3° | 120.0° |
H8 | CCU | CCV | H9 | 0.0° | 0.0° |
H9 | CCV | CCW | H10 | 0.1° | 0.0° |
H10 | CCW | CCX | H11 | 0.2° | 0.1° |
H11 | CCX | CCY | H12 | 0.4° | 0.0° |
PAD | O2 | C2 | C3 | 90.0° | 89.2° |
PAD | O2 | C2 | C7 | 90.0° | 91.0° |
O2 | C2 | C3 | C7 | 90.0° | 179.8° |
O2 | C2 | C3 | C4 | 90.0° | 180.0° |
O2 | C2 | C7 | C6 | 90.0° | 179.7° |
O2 | C2 | C3 | H15 | 90.0° | 0.1° |
O2 | C2 | C7 | H23 | 90.0° | 0.2° |
C2 | C3 | C4 | H15 | 90.0° | 179.9° |
C2 | C3 | C4 | C5 | 90.0° | 0.1° |
C3 | C2 | C7 | C6 | 90.0° | 0.5° |
C2 | C3 | C4 | H20 | 90.0° | 180.0° |
C3 | C2 | C7 | H23 | 90.0° | 180.0° |
C3 | C4 | C5 | H20 | 90.0° | 180.0° |
C3 | C4 | C5 | C6 | 90.0° | 0.0° |
C4 | C3 | C2 | C7 | 90.0° | 0.2° |
C3 | C4 | C5 | H21 | 90.0° | 180.0° |
C4 | C5 | C6 | H21 | 90.0° | 180.0° |
C4 | C5 | C6 | C7 | 90.0° | 0.3° |
C5 | C4 | C3 | H15 | 90.0° | 180.0° |
C4 | C5 | C6 | H22 | 90.0° | 180.0° |
C5 | C6 | C7 | H22 | 90.0° | 179.7° |
C5 | C6 | C7 | C2 | 90.0° | 0.6° |
C6 | C5 | C4 | H20 | 90.0° | 180.0° |
C5 | C6 | C7 | H23 | 90.0° | 180.0° |
C6 | C7 | C2 | H23 | 90.0° | 179.5° |
C7 | C6 | C5 | H21 | 90.0° | 179.7° |
C7 | C2 | C3 | H15 | 90.0° | 179.7° |
C2 | C7 | C6 | H22 | 90.0° | 179.7° |
H15 | C3 | C4 | H20 | 90.0° | 0.0° |
H20 | C4 | C5 | H21 | 90.0° | 0.0° |
H21 | C5 | C6 | H22 | 90.0° | 0.0° |
H22 | C6 | C7 | H23 | 90.0° | 0.2° |