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A1H1Y

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CL2C23sing1.74Å1.72Å
C23C22doub1.38Å1.38ÅAromatic
C23C24sing1.38Å1.39ÅAromatic
C22C21sing1.38Å1.38ÅAromatic
C24C19doub1.39Å1.38ÅAromatic
C21CL1sing1.74Å1.74Å
C21C20doub1.38Å1.39ÅAromatic
NAAN3doub1.29Å1.31ÅAromatic
NAAN2sing1.29Å1.34ÅAromatic
C19C20sing1.39Å1.41ÅAromatic
C19N1sing1.40Å1.43Å
OP3C1sing1.43Å1.42Å
OP3C2sing1.43Å1.42Å
N3C4sing1.35Å1.35ÅAromatic
C3N2sing1.46Å1.46Å
C3C2sing1.53Å1.52Å
C3C1'sing1.53Å1.53Å
N2C11sing1.35Å1.34ÅAromatic
C12C2sing1.53Å1.53Å
C12C6sing1.51Å1.52Å
C12O2'sing1.43Å1.44Å
C15C14sing1.54Å1.53Å
C15C16sing1.55Å1.53Å
N1C6sing1.35Å1.36Å
N1C14sing1.46Å1.48Å
C6O6doub1.21Å1.23Å
C2'C1'sing1.53Å1.52Å
C2'O2'sing1.43Å1.43Å
C2'C3'sing1.53Å1.51Å
C4C11doub1.36Å1.36ÅAromatic
C4C5sing1.48Å1.47Å
C8C5doub1.39Å1.39ÅAromatic
C8C7sing1.38Å1.37ÅAromatic
C1'O4'sing1.43Å1.44Å
F1C7sing1.35Å1.36Å
C14C5'sing1.54Å1.51Å
C16C17sing1.55Å1.54Å
O3'C3'sing1.43Å1.39Å
C5CAAsing1.39Å1.39ÅAromatic
C7C10doub1.39Å1.38ÅAromatic
C5'C17sing1.54Å1.53Å
C5'O5'sing1.43Å1.37Å
CAAC9doub1.38Å1.38ÅAromatic
C10C9sing1.39Å1.36ÅAromatic
C10F3sing1.35Å1.34Å
C9F2sing1.35Å1.36Å
C8H6sing1.08Å1.08Å
C15H12sing1.09Å1.10Å
C15H11sing1.09Å1.10Å
C17H15sing1.09Å1.10Å
C17H16sing1.09Å1.10Å
C20H19sing1.08Å1.08Å
C22H20sing1.08Å1.08Å
C24H21sing1.08Å1.08Å
C1H2sing1.09Å1.10Å
C1H3sing1.09Å1.10Å
C1H1sing1.09Å1.10Å
C2H4sing1.09Å1.10Å
C3H5sing1.09Å1.10Å
CAAH7sing1.08Å1.08Å
C11H8sing1.08Å1.08Å
C12H9sing1.09Å1.10Å
C14H10sing1.09Å1.10Å
C16H13sing1.09Å1.10Å
C16H14sing1.09Å1.10Å
C5'H17sing1.09Å1.10Å
O5'H18sing0.97Å0.95Å
C2'H22sing1.09Å1.10Å
C3'H23sing1.09Å1.10Å
C3'H24sing1.09Å1.10Å
O3'H25sing0.97Å0.95Å
C1'H26sing1.09Å1.10Å
O4'H27sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CL2C23C22118.2°120.0°
CL2C23C24119.3°120.0°
C22C23C24122.5°120.0°
C23C22C21117.5°120.1°
C23C22H20121.2°120.0°
C23C24C19119.2°119.9°
C23C24H21120.4°120.0°
C22C21CL1118.8°120.0°
C22C21C20122.1°120.0°
C21C22H20121.3°119.9°
C24C19C20120.2°119.9°
C24C19N1119.2°120.0°
C19C24H21120.4°120.0°
CL1C21C20119.1°120.0°
C21C20C19118.5°119.9°
C21C20H19120.7°120.0°
N3NAAN2107.1°110.4°
NAAN3C4109.1°108.8°
NAAN2C3119.3°125.7°
NAAN2C11110.4°108.5°
C20C19N1120.6°120.0°
C19C20H19120.7°120.1°
C19N1C6121.4°120.0°
C19N1C14120.5°120.0°
C1OP3C2117.3°114.0°
OP3C1H2109.5°109.4°
OP3C1H3109.5°109.5°
OP3C1H1109.4°109.5°
OP3C2C3108.5°109.6°
OP3C2C12108.5°109.5°
OP3C2H4111.5°109.5°
N3C4C11107.8°106.2°
N3C4C5122.3°126.9°
N2C3C2111.7°109.6°
N2C3C1'110.3°109.5°
C3N2C11130.2°125.8°
N2C3H5108.6°109.6°
C2C3C1'110.4°109.0°
C3C2C12108.3°109.2°
C3C2H4110.1°109.6°
C2C3H5107.9°109.5°
C3C1'C2'109.7°109.2°
C3C1'O4'110.7°109.6°
C1'C3H5107.7°109.6°
C3C1'H26108.3°109.5°
N2C11C4105.6°106.1°
N2C11H8127.2°127.0°
C2C12C6112.1°109.5°
C2C12O2'111.6°109.4°
C12C2H4109.9°109.5°
C2C12H9109.2°109.4°
C6C12O2'103.8°109.5°
C12C6N1118.0°120.0°
C12C6O6119.9°120.0°
C6C12H9109.4°109.5°
C12O2'C2'113.7°114.1°
O2'C12H9110.6°109.5°
C14C15C16102.3°104.2°
C15C14N1114.7°110.0°
C15C14C5'102.8°106.6°
C14C15H12111.2°110.5°
C14C15H11111.2°110.5°
C15C14H10108.7°110.0°
C15C16C17106.3°102.7°
C16C15H12111.2°110.5°
C16C15H11111.2°110.5°
C15C16H13110.3°110.8°
C15C16H14110.3°110.7°
C6N1C14117.3°120.0°
N1C6O6121.9°120.0°
N1C14C5'112.0°110.0°
N1C14H10109.4°110.0°
C1'C2'O2'109.4°109.4°
C1'C2'C3'112.0°109.5°
C2'C1'O4'110.2°109.5°
C1'C2'H22109.0°109.4°
C2'C1'H26108.5°109.5°
O2'C2'C3'107.1°109.5°
O2'C2'H22110.2°109.4°
C2'C3'O3'110.7°109.4°
C3'C2'H22109.1°109.5°
C2'C3'H23109.2°109.5°
C2'C3'H24109.1°109.5°
C11C4C5129.8°126.9°
C4C11H8127.2°127.0°
C4C5C8121.1°120.0°
C4C5CAA119.2°120.1°
C5C8C7119.2°119.9°
C8C5CAA119.6°119.9°
C5C8H6120.4°120.1°
C8C7F1119.4°120.0°
C8C7C10121.6°120.1°
C7C8H6120.4°120.0°
O4'C1'H26109.5°109.6°
C1'O4'H27109.5°114.0°
F1C7C10119.0°120.0°
C14C5'C17100.9°106.6°
C14C5'O5'111.8°110.0°
C5'C14H10108.9°110.1°
C14C5'H17110.5°110.0°
C16C17C5'105.1°104.2°
C16C17H15110.6°110.5°
C16C17H16110.6°110.5°
C17C16H13110.3°110.8°
C17C16H14110.2°110.7°
O3'C3'H23109.1°109.5°
O3'C3'H24109.2°109.5°
C3'O3'H25109.5°114.0°
C5CAAC9119.3°119.9°
C5CAAH7120.4°120.0°
C7C10C9118.7°120.2°
C7C10F3120.1°119.9°
C17C5'O5'109.9°110.0°
C5'C17H15110.5°110.6°
C5'C17H16110.5°110.6°
C17C5'H17110.3°110.1°
O5'C5'H17112.8°110.1°
C5'O5'H18109.5°114.0°
CAAC9C10121.6°120.0°
CAAC9F2119.6°120.0°
C9CAAH7120.4°120.0°
C9C10F3121.1°119.9°
C10C9F2118.8°120.0°
H12C15H11109.5°110.5°
H15C17H16109.5°110.4°
H2C1H3109.5°109.5°
H2C1H1109.5°109.5°
H3C1H1109.5°109.5°
H13C16H14109.5°110.8°
H23C3'H24109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CL2C23C22C24179.4°179.6°
CL2C23C22C21179.6°180.0°
CL2C23C24C19179.0°180.0°
CL2C23C22H200.4°0.1°
CL2C23C24H211.0°0.1°
C23C22C21H20180.0°179.9°
C22C23C24C190.4°0.4°
C23C22C21CL1179.9°179.9°
C23C22C21C200.6°0.1°
C22C23C24H21179.6°179.7°
C24C23C22C210.2°0.4°
C23C24C19H21180.0°179.9°
C23C24C19C200.5°0.1°
C23C24C19N1179.9°179.9°
C24C23C22H20179.8°179.7°
C22C21CL1C20179.4°180.0°
C22C21C20C190.5°0.3°
C22C21C20H19179.6°179.9°
C24C19C20C210.1°0.3°
C24C19C20N1179.4°180.0°
C24C19N1C685.9°1.2°
C24C19N1C14104.4°179.1°
C24C19C20H19179.9°179.9°
CL1C21C20C19179.8°179.7°
CL1C21C20H190.2°0.1°
CL1C21C22H200.0°0.0°
C21C20C19H19180.0°179.6°
C21C20C19N1179.5°179.7°
C20C21C22H20179.4°179.9°
N3NAAN2C3177.8°180.0°
N3NAAN2C110.2°0.0°
NAAN3C4C110.9°0.0°
NAAN3C4C5178.2°180.0°
N2NAAN3C40.4°0.0°
NAAN2C3C11177.0°180.0°
NAAN2C3C2123.0°95.0°
NAAN2C3C1'113.9°145.5°
NAAN2C11C40.8°0.0°
NAAN2C3H54.0°25.2°
NAAN2C11H8179.2°179.9°
C20C19N1C694.7°178.8°
C20C19N1C1475.1°0.9°
C20C19C24H21179.5°180.0°
C19N1C6C129.5°132.6°
C19N1C14C1547.1°161.9°
C19N1C6C14170.1°179.7°
C19N1C6O6176.6°47.5°
C19N1C14C5'69.6°44.7°
N1C19C20H190.5°0.1°
N1C19C24H210.1°0.0°
C19N1C14H10169.5°76.8°
C1OP3C2C3119.8°91.0°
C1OP3C2C12122.7°149.2°
OP3C1H2H3120.0°120.0°
OP3C1H2H1120.0°120.0°
OP3C1H3H1120.0°120.0°
C1OP3C2H41.6°29.2°
OP3C2C3N264.3°63.2°
OP3C2C3C12117.6°119.9°
OP3C2C3H4122.3°120.1°
OP3C2C3C1'172.6°176.9°
OP3C2C12H4122.2°120.0°
OP3C2C12C671.2°62.5°
OP3C2C12O2'172.9°177.6°
C2OP3C1H2180.0°57.3°
C2OP3C1H360.0°62.7°
C2OP3C1H160.0°177.3°
OP3C2C3H555.0°57.0°
OP3C2C12H950.2°57.6°
N3C4C11N21.0°0.0°
N3C4C11C5177.0°180.0°
N3C4C5C818.2°179.7°
N3C4C5CAA158.5°0.0°
N3C4C11H8179.0°179.9°
N2C3C2C1'123.1°119.9°
N2C3C2H5119.4°120.2°
N2C3C1'H5118.4°120.3°
N2C3C2C12178.1°176.8°
N2C3C1'C2'178.8°176.8°
C3N2C11C4178.0°180.0°
N2C3C1'O4'59.4°56.9°
N2C3C2H458.0°56.9°
C3N2C11H82.0°0.1°
N2C3C1'H2660.6°63.3°
C2C3C1'H5117.6°119.9°
C2C3N2C1160.1°85.0°
C3C2C12H4120.2°120.0°
C3C2C12C6171.2°177.6°
C3C2C12O2'55.2°57.6°
C2C3C1'C2'57.3°56.9°
C2C3C1'O4'64.5°62.9°
C3C2C12H967.4°62.4°
C2C3C1'H26175.5°176.9°
C1'C3N2C1163.1°34.5°
C1'C3C2C1254.9°57.0°
C3C1'C2'O4'122.1°119.9°
C3C1'C2'H26118.1°119.9°
C3C1'C2'O2'57.7°57.6°
C3C1'C2'C3'176.2°177.6°
C3C1'O4'H26119.3°120.2°
C1'C3C2H465.1°63.0°
C3C1'C2'H2262.9°62.3°
C3C1'O4'H27180.0°180.0°
N2C11C4H8180.0°179.9°
N2C11C4C5178.0°180.0°
C11N2C3H5179.0°154.8°
C2C12C6O2'120.6°119.9°
C2C12C6H9121.3°120.0°
C2C12O2'H9121.9°119.9°
C2C12C6N1162.1°126.0°
C2C12C6O623.9°53.9°
C2C12O2'C2'59.3°61.1°
C12C2C3H562.6°63.0°
C6C12O2'H9117.2°120.1°
C12C6N1O6173.9°180.0°
C12C6N1C14160.5°47.1°
C6C12O2'C2'179.7°178.9°
C6C12C2H451.0°57.6°
O2'C12C6N177.3°114.0°
O2'C12C6O696.7°66.0°
C12O2'C2'C1'59.7°61.1°
C12O2'C2'C3'178.7°178.9°
O2'C12C2H465.0°62.4°
C12O2'C2'H2260.2°58.8°
C14C15C16H12118.9°118.7°
C14C15C16H11118.8°118.7°
C15C14N1C6142.8°17.8°
C15C14N1C5'116.6°117.2°
C15C14N1H10122.5°121.4°
C15C14C5'H10115.2°119.3°
C14C15C16C1720.0°37.9°
C15C14C5'C1747.4°0.0°
C15C14C5'O5'164.1°119.3°
C14C15H12H11123.3°122.6°
C14C15C16H1399.5°156.3°
C14C15C16H14139.5°80.4°
C15C14C5'H1769.3°119.3°
C16C15C14N1163.8°95.7°
C16C15C14C5'42.0°23.6°
C15C16C17H13119.5°118.4°
C15C16C17H14119.5°118.3°
C15C16C17C5'8.7°37.9°
C16C15H12H11123.3°122.6°
C15C16C17H15110.6°80.8°
C15C16C17H16128.0°156.7°
C16C15C14H1073.4°142.9°
C15C16H13H14121.5°123.3°
C6N1C14C5'100.6°134.9°
N1C6C12H940.8°6.1°
C6N1C14H1020.3°103.6°
C14N1C6O613.4°132.9°
N1C14C5'H10121.2°121.4°
N1C14C5'C17171.0°119.3°
N1C14C5'O5'72.2°121.4°
N1C14C15H1277.4°145.6°
N1C14C15H1144.9°23.0°
N1C14C5'H1754.3°0.0°
O6C6C12H9145.2°173.9°
C1'C2'O2'C3'121.6°120.0°
C1'C2'O2'H22119.9°119.9°
C1'C2'C3'H22120.8°120.0°
C2'C1'O4'H26119.2°120.1°
C1'C2'C3'O3'175.2°175.0°
C2'C1'C3H560.3°62.9°
C1'C2'C3'H2355.0°55.0°
C1'C2'C3'H2464.6°65.0°
C2'C1'O4'H2758.5°60.4°
O2'C2'C3'H22119.2°120.0°
O2'C2'C1'O4'64.4°62.3°
O2'C2'C3'O3'64.9°65.1°
C2'O2'C12H962.5°58.8°
O2'C2'C3'H23175.0°175.0°
O2'C2'C3'H2455.3°54.9°
O2'C2'C1'H26175.8°177.5°
C3'C2'C1'O4'54.1°57.7°
C2'C3'O3'H23120.2°120.0°
C2'C3'O3'H24120.2°120.0°
C2'C3'H23H24119.4°120.0°
C2'C3'O3'H25180.0°179.9°
C3'C2'C1'H2665.7°62.5°
C11C4C5C8165.2°0.2°
C11C4C5CAA18.2°180.0°
C4C5C8CAA176.7°179.7°
C4C5C8C7177.9°180.0°
C4C5CAAC9178.1°180.0°
C4C5C8H62.1°0.0°
C4C5CAAH71.9°0.1°
C5C4C11H82.0°0.1°
C5C8C7H6180.0°180.0°
C5C8C7F1179.4°179.7°
C5C8C7C100.8°0.0°
C8C5CAAC91.4°0.3°
C8C5CAAH7178.6°179.7°
C8C7F1C10179.8°179.7°
C7C8C5CAA1.2°0.3°
C8C7C10C90.6°0.3°
C8C7C10F3179.0°180.0°
O4'C1'C3H5177.8°177.2°
O4'C1'C2'H22175.0°177.8°
F1C7C10C9179.6°180.0°
F1C7C10F31.2°0.3°
F1C7C8H60.6°0.2°
C14C5'C17C1634.2°23.6°
C14C5'C17O5'118.2°119.3°
C14C5'C17H17116.9°119.3°
C14C5'O5'H17125.3°121.4°
C5'C14C15H12160.8°95.1°
C5'C14C15H1176.8°142.3°
C14C5'C17H1585.1°95.1°
C14C5'C17H16153.6°142.4°
C14C5'O5'H18180.0°174.3°
C16C17C5'H15119.3°118.7°
C16C17C5'H16119.3°118.7°
C16C17C5'O5'152.4°142.9°
C17C16C15H12138.9°80.8°
C17C16C15H1198.8°156.6°
C16C17H15H16122.1°122.5°
C17C16H13H14121.4°123.3°
C16C17C5'H1782.7°95.7°
O3'C3'C2'H2254.4°54.9°
O3'C3'H23H24119.5°120.0°
C5CAAC9H7180.0°180.0°
C5CAAC9C101.2°0.0°
C5CAAC9F2179.9°179.7°
CAAC5C8H6178.8°179.8°
C7C10C9CAA0.8°0.3°
C7C10C9F3178.4°179.7°
C7C10C9F2179.6°180.0°
C10C7C8H6179.2°179.9°
C17C5'O5'H17123.5°121.5°
C5'C17H15H16122.0°122.7°
C17C5'C14H1067.8°119.3°
C5'C17C16H13128.3°156.3°
C5'C17C16H14110.8°80.4°
C17C5'O5'H1868.8°68.6°
O5'C5'C17H1533.1°24.2°
O5'C5'C17H1688.3°98.4°
O5'C5'C14H1048.9°0.0°
CAAC9C10F2178.9°179.7°
CAAC9C10F3179.2°180.0°
C10C9CAAH7178.8°180.0°
F3C10C9F21.9°0.3°
F2C9CAAH70.0°0.4°
H12C15C14H1045.5°24.3°
H12C15C16H1319.4°37.6°
H12C15C16H14101.6°161.0°
H11C15C14H10167.8°98.3°
H11C15C16H13141.7°85.0°
H11C15C16H1420.7°38.3°
H15C17C16H139.0°37.6°
H15C17C16H14130.0°160.9°
H15C17C5'H17158.0°145.6°
H16C17C16H13112.5°84.9°
H16C17C16H148.5°38.4°
H16C17C5'H1736.7°23.1°
H2C1H3H1120.0°120.0°
H4C2C3H5177.3°177.1°
H4C2C12H9172.4°177.6°
H5C3C1'H2657.9°57.0°
H10C14C5'H17175.5°121.4°
H17C5'O5'H1854.7°52.9°
H22C2'C3'H2365.8°65.0°
H22C2'C3'H24174.5°175.0°
H22C2'C1'H2655.2°57.6°
H23C3'O3'H2559.8°60.1°
H24C3'O3'H2559.8°59.9°
H26C1'O4'H2760.7°59.8°

251801

PDB entries from 2026-04-08

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