English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

A1H0L

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C1	doub	1.21Å	1.24Å
O2	C1	sing	1.34Å	1.24Å
C1	C2	sing	1.51Å	1.52Å
C4	C3	doub	1.32Å	1.35Å	Aromatic
C4	S1	sing	1.75Å	1.73Å	Aromatic
C2	C3	sing	1.51Å	1.49Å
C3	C6	sing	1.45Å	1.49Å	Aromatic
S1	C5	sing	1.76Å	1.73Å	Aromatic
C6	C5	doub	1.40Å	1.40Å	Aromatic
C6	C7	sing	1.41Å	1.39Å	Aromatic
C5	C10	sing	1.40Å	1.39Å	Aromatic
C7	C8	doub	1.36Å	1.39Å	Aromatic
C10	C9	doub	1.37Å	1.38Å	Aromatic
C8	C9	sing	1.39Å	1.39Å	Aromatic
C10	H1	sing	1.08Å	1.08Å
C2	H2	sing	1.09Å	1.10Å
C2	H3	sing	1.09Å	1.10Å
C4	H5	sing	1.08Å	1.08Å
C7	H7	sing	1.08Å	1.08Å
C8	H8	sing	1.08Å	1.08Å
C9	H9	sing	1.08Å	1.08Å
O2	H10	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C1	O2	126.4°	120.0°
O1	C1	C2	117.4°	120.0°
O2	C1	C2	116.2°	119.9°
C1	O2	H10	109.5°	117.0°
C1	C2	C3	117.9°	109.4°
C1	C2	H2	107.3°	109.5°
C1	C2	H3	107.3°	109.5°
C3	C4	S1	113.3°	111.4°
C4	C3	C2	126.4°	122.6°
C4	C3	C6	109.9°	114.9°
C3	C4	H5	123.3°	124.3°
C4	S1	C5	92.3°	92.2°
S1	C4	H5	123.3°	124.3°
C2	C3	C6	123.8°	122.6°
C3	C2	H2	107.3°	109.4°
C3	C2	H3	107.4°	109.5°
C3	C6	C5	113.0°	111.9°
C3	C6	C7	127.5°	129.3°
S1	C5	C6	109.9°	109.7°
S1	C5	C10	128.4°	130.5°
C5	C6	C7	119.5°	118.8°
C6	C5	C10	121.7°	119.8°
C6	C7	C8	118.9°	120.5°
C6	C7	H7	120.6°	119.8°
C5	C10	C9	118.1°	120.1°
C5	C10	H1	121.0°	119.9°
C7	C8	C9	121.1°	120.5°
C8	C7	H7	120.5°	119.7°
C7	C8	H8	119.5°	119.7°
C10	C9	C8	120.8°	120.2°
C9	C10	H1	121.0°	119.9°
C10	C9	H9	119.6°	119.9°
C9	C8	H8	119.5°	119.8°
C8	C9	H9	119.6°	119.9°
H2	C2	H3	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	O2	C2	179.7°	179.6°
O1	C1	C2	C3	8.7°	0.1°
O1	C1	C2	H2	129.8°	120.0°
O1	C1	C2	H3	112.6°	119.9°
O1	C1	O2	H10	0.0°	0.3°
O2	C1	C2	C3	171.1°	179.7°
O2	C1	C2	H2	49.9°	60.4°
O2	C1	C2	H3	67.7°	59.7°
C1	C2	C3	C4	42.0°	95.0°
C1	C2	C3	H2	121.2°	119.9°
C1	C2	C3	H3	121.2°	120.1°
C1	C2	C3	C6	137.4°	84.9°
C1	C2	H2	H3	116.2°	120.1°
C2	C1	O2	H10	179.8°	180.0°
C3	C4	S1	H5	180.0°	180.0°
C4	C3	C2	C6	179.5°	179.9°
C3	C4	S1	C5	11.8°	0.0°
C4	C3	C6	C5	8.5°	0.0°
C4	C3	C6	C7	171.7°	180.0°
C4	C3	C2	H2	79.1°	145.1°
C4	C3	C2	H3	163.2°	25.1°
S1	C4	C3	C2	167.2°	180.0°
S1	C4	C3	C6	13.3°	0.0°
C4	S1	C5	C6	6.2°	0.0°
C4	S1	C5	C10	173.9°	180.0°
C2	C3	C6	C5	171.9°	180.0°
C2	C3	C6	C7	7.9°	0.0°
C3	C2	H2	H3	116.2°	120.0°
C2	C3	C4	H5	12.8°	0.1°
C3	C6	C5	S1	0.0°	0.0°
C3	C6	C5	C7	179.8°	180.0°
C3	C6	C5	C10	179.9°	180.0°
C3	C6	C7	C8	180.0°	180.0°
C6	C3	C2	H2	101.4°	35.0°
C6	C3	C2	H3	16.2°	155.0°
C6	C3	C4	H5	166.7°	180.0°
C3	C6	C7	H7	0.0°	0.0°
S1	C5	C6	C10	179.9°	180.0°
S1	C5	C6	C7	179.8°	180.0°
S1	C5	C10	C9	179.9°	180.0°
S1	C5	C10	H1	0.0°	0.3°
C5	S1	C4	H5	168.3°	180.0°
C5	C6	C7	C8	0.3°	0.0°
C6	C5	C10	C9	0.2°	0.0°
C6	C5	C10	H1	179.9°	179.7°
C5	C6	C7	H7	179.7°	180.0°
C7	C6	C5	C10	0.1°	0.0°
C6	C7	C8	H7	180.0°	180.0°
C6	C7	C8	C9	0.2°	0.0°
C6	C7	C8	H8	179.8°	180.0°
C5	C10	C9	H1	180.0°	179.6°
C5	C10	C9	C8	0.3°	0.0°
C5	C10	C9	H9	179.8°	179.7°
C7	C8	C9	C10	0.1°	0.0°
C7	C8	C9	H8	180.0°	180.0°
C7	C8	C9	H9	179.9°	179.8°
C10	C9	C8	H9	180.0°	179.8°
C10	C9	C8	H8	179.9°	180.0°
C8	C9	C10	H1	179.8°	179.7°
C9	C8	C7	H7	179.8°	180.0°
H1	C10	C9	H9	0.2°	0.1°
H7	C7	C8	H8	0.2°	0.0°
H8	C8	C9	H9	0.1°	0.3°

225946

PDB entries from 2024-10-09

PDB statistics

PDBj update info

Contact PDBj

numon