A1EY1
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP1 | P | doub | 1.48Å | 1.52Å | |
| OP3 | P | sing | 1.61Å | 1.51Å | |
| P | OP2 | sing | 1.61Å | 1.51Å | |
| P | O5' | sing | 1.61Å | 1.62Å | |
| O5' | C5' | sing | 1.43Å | 1.45Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C4' | C3' | sing | 1.54Å | 1.53Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.55Å | 1.54Å | |
| S | C9 | sing | 1.75Å | 1.71Å | Aromatic |
| S | C4 | sing | 1.71Å | 1.72Å | Aromatic |
| C9 | C10 | doub | 1.32Å | 1.37Å | Aromatic |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C10 | C2 | sing | 1.45Å | 1.43Å | Aromatic |
| C2' | C1' | sing | 1.55Å | 1.54Å | |
| C2' | O2' | sing | 1.43Å | 1.42Å | |
| C4 | C2 | doub | 1.38Å | 1.37Å | Aromatic |
| C4 | N1 | sing | 1.39Å | 1.39Å | |
| C1' | N1 | sing | 1.46Å | 1.46Å | |
| C2 | C3 | sing | 1.48Å | 1.44Å | |
| N1 | C1 | sing | 1.34Å | 1.39Å | |
| C3 | O4 | doub | 1.22Å | 1.23Å | |
| C3 | N3 | sing | 1.35Å | 1.38Å | |
| C1 | N3 | sing | 1.34Å | 1.37Å | |
| C1 | O2 | doub | 1.22Å | 1.22Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C10 | H2 | sing | 1.08Å | 1.08Å | |
| C9 | H1 | sing | 1.08Å | 1.08Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| N3 | H3 | sing | 0.97Å | 1.00Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP3 | 112.5° | 109.5° |
| OP1 | P | OP2 | 112.1° | 109.5° |
| OP1 | P | O5' | 105.3° | 109.5° |
| OP3 | P | OP2 | 112.8° | 109.4° |
| OP3 | P | O5' | 107.5° | 109.4° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| OP2 | P | O5' | 106.0° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| P | O5' | C5' | 119.5° | 123.0° |
| O5' | C5' | C4' | 109.0° | 109.4° |
| O5' | C5' | H5' | 109.6° | 109.5° |
| O5' | C5' | H5'' | 109.6° | 109.5° |
| C5' | C4' | C3' | 114.4° | 109.9° |
| C5' | C4' | O4' | 109.9° | 109.9° |
| C4' | C5' | H5' | 109.6° | 109.5° |
| C4' | C5' | H5'' | 109.6° | 109.4° |
| C5' | C4' | H4' | 108.6° | 109.9° |
| C3' | C4' | O4' | 106.1° | 107.2° |
| C4' | C3' | O3' | 109.6° | 110.4° |
| C4' | C3' | C2' | 104.7° | 104.2° |
| C4' | C3' | H3' | 109.9° | 110.7° |
| C3' | C4' | H4' | 108.3° | 109.9° |
| C4' | O4' | C1' | 107.8° | 107.0° |
| O4' | C4' | H4' | 109.5° | 110.0° |
| O3' | C3' | C2' | 111.4° | 110.5° |
| O3' | C3' | H3' | 111.4° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C3' | C2' | C1' | 104.1° | 102.1° |
| C3' | C2' | O2' | 110.7° | 110.9° |
| C2' | C3' | H3' | 109.7° | 110.5° |
| C3' | C2' | H2' | 109.7° | 110.9° |
| C9 | S | C4 | 90.6° | 92.7° |
| S | C9 | C10 | 112.9° | 110.9° |
| S | C9 | H1 | 123.5° | 124.6° |
| S | C4 | C2 | 113.1° | 110.6° |
| S | C4 | N1 | 124.1° | 130.4° |
| C9 | C10 | C2 | 112.3° | 113.6° |
| C9 | C10 | H2 | 123.8° | 123.2° |
| C10 | C9 | H1 | 123.6° | 124.5° |
| O4' | C1' | C2' | 106.9° | 103.6° |
| O4' | C1' | N1 | 108.4° | 110.6° |
| O4' | C1' | H1' | 109.4° | 110.6° |
| C10 | C2 | C4 | 111.0° | 112.2° |
| C10 | C2 | C3 | 130.1° | 130.0° |
| C2 | C10 | H2 | 123.8° | 123.2° |
| C1' | C2' | O2' | 111.0° | 110.9° |
| C2' | C1' | N1 | 115.5° | 110.6° |
| C2' | C1' | H1' | 107.8° | 110.6° |
| C1' | C2' | H2' | 109.7° | 110.9° |
| O2' | C2' | H2' | 111.4° | 110.9° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C2 | C4 | N1 | 122.8° | 119.0° |
| C4 | C2 | C3 | 118.8° | 117.9° |
| C4 | N1 | C1' | 122.8° | 119.4° |
| C4 | N1 | C1 | 120.3° | 121.2° |
| C1' | N1 | C1 | 117.0° | 119.4° |
| N1 | C1' | H1' | 108.8° | 110.6° |
| C2 | C3 | O4 | 124.6° | 120.5° |
| C2 | C3 | N3 | 115.0° | 119.0° |
| N1 | C1 | N3 | 115.6° | 122.1° |
| N1 | C1 | O2 | 122.7° | 118.9° |
| O4 | C3 | N3 | 120.4° | 120.5° |
| C3 | N3 | C1 | 127.5° | 120.9° |
| C3 | N3 | H3 | 116.3° | 119.6° |
| N3 | C1 | O2 | 121.7° | 119.0° |
| C1 | N3 | H3 | 116.3° | 119.6° |
| H5' | C5' | H5'' | 109.4° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP3 | OP2 | 128.0° | 120.0° |
| OP1 | P | OP3 | O5' | 115.5° | 120.0° |
| OP1 | P | OP2 | O5' | 114.4° | 120.0° |
| OP1 | P | O5' | C5' | 61.9° | 55.0° |
| OP1 | P | OP3 | HOP3 | 0.0° | 180.0° |
| OP1 | P | OP2 | HOP2 | 0.0° | 60.0° |
| OP3 | P | OP2 | O5' | 117.4° | 119.9° |
| OP3 | P | O5' | C5' | 58.2° | 65.0° |
| OP3 | P | OP2 | HOP2 | 128.3° | 60.0° |
| OP2 | P | O5' | C5' | 179.1° | 175.0° |
| OP2 | P | OP3 | HOP3 | 128.0° | 60.0° |
| P | O5' | C5' | C4' | 171.9° | 180.0° |
| P | O5' | C5' | H5' | 68.1° | 60.0° |
| P | O5' | C5' | H5'' | 52.0° | 60.0° |
| O5' | P | OP3 | HOP3 | 115.5° | 60.0° |
| O5' | P | OP2 | HOP2 | 114.4° | 180.0° |
| O5' | C5' | C4' | H5' | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'' | 119.9° | 120.0° |
| O5' | C5' | C4' | C3' | 166.9° | 175.0° |
| O5' | C5' | C4' | O4' | 73.9° | 67.2° |
| O5' | C5' | H5' | H5'' | 120.2° | 120.0° |
| O5' | C5' | C4' | H4' | 45.8° | 54.0° |
| C5' | C4' | C3' | O4' | 121.3° | 119.4° |
| C5' | C4' | C3' | H4' | 121.2° | 121.0° |
| C5' | C4' | O4' | H4' | 119.2° | 121.1° |
| C5' | C4' | C3' | O3' | 100.2° | 119.9° |
| C5' | C4' | C3' | C2' | 140.2° | 121.5° |
| C5' | C4' | O4' | C1' | 156.4° | 145.9° |
| C4' | C5' | H5' | H5'' | 120.2° | 120.0° |
| C5' | C4' | C3' | H3' | 22.5° | 2.7° |
| C3' | C4' | O4' | H4' | 116.7° | 119.5° |
| C4' | C3' | O3' | C2' | 115.3° | 114.7° |
| C4' | C3' | O3' | H3' | 121.8° | 122.7° |
| C4' | C3' | C2' | H3' | 117.8° | 118.9° |
| C3' | C4' | O4' | C1' | 32.3° | 26.5° |
| C4' | C3' | C2' | C1' | 0.2° | 20.8° |
| C4' | C3' | C2' | O2' | 119.1° | 138.9° |
| C3' | C4' | C5' | H5' | 73.1° | 55.0° |
| C3' | C4' | C5' | H5'' | 47.0° | 65.0° |
| C4' | C3' | O3' | HO3' | 180.0° | 176.1° |
| C4' | C3' | C2' | H2' | 117.6° | 97.4° |
| O4' | C4' | C3' | O3' | 138.5° | 120.7° |
| O4' | C4' | C3' | C2' | 18.9° | 2.0° |
| C4' | O4' | C1' | C2' | 32.2° | 40.0° |
| C4' | O4' | C1' | N1 | 157.3° | 158.5° |
| C4' | O4' | C1' | H1' | 84.2° | 78.5° |
| O4' | C4' | C5' | H5' | 46.1° | 172.8° |
| O4' | C4' | C5' | H5'' | 166.2° | 52.8° |
| O4' | C4' | C3' | H3' | 98.8° | 116.7° |
| O3' | C3' | C2' | H3' | 123.8° | 122.5° |
| O3' | C3' | C2' | C1' | 118.6° | 97.8° |
| O3' | C3' | C2' | O2' | 0.8° | 20.4° |
| O3' | C3' | C2' | H2' | 124.1° | 144.0° |
| O3' | C3' | C4' | H4' | 21.0° | 1.2° |
| C3' | C2' | C1' | O4' | 19.0° | 37.0° |
| C3' | C2' | C1' | O2' | 119.1° | 118.1° |
| C3' | C2' | C1' | H2' | 117.3° | 118.2° |
| C3' | C2' | O2' | H2' | 122.3° | 123.6° |
| C3' | C2' | C1' | N1 | 139.7° | 155.5° |
| C3' | C2' | C1' | H1' | 98.6° | 81.6° |
| C2' | C3' | O3' | HO3' | 64.7° | 61.4° |
| C2' | C3' | C4' | H4' | 98.6° | 117.5° |
| C3' | C2' | O2' | HO2' | 180.0° | 61.5° |
| S | C9 | C10 | H1 | 180.0° | 179.8° |
| S | C9 | C10 | C2 | 0.2° | 0.1° |
| C9 | S | C4 | C2 | 0.4° | 0.1° |
| C9 | S | C4 | N1 | 178.3° | 179.8° |
| S | C9 | C10 | H2 | 179.8° | 179.9° |
| C4 | S | C9 | C10 | 0.3° | 0.0° |
| S | C4 | C2 | C10 | 0.3° | 0.2° |
| S | C4 | C2 | N1 | 178.7° | 179.9° |
| S | C4 | N1 | C1' | 1.2° | 0.1° |
| S | C4 | C2 | C3 | 179.0° | 180.0° |
| S | C4 | N1 | C1 | 178.1° | 180.0° |
| C4 | S | C9 | H1 | 179.7° | 179.9° |
| C9 | C10 | C2 | H2 | 180.0° | 180.0° |
| C9 | C10 | C2 | C4 | 0.1° | 0.2° |
| C9 | C10 | C2 | C3 | 178.5° | 179.9° |
| O4' | C1' | C2' | N1 | 120.7° | 118.5° |
| O4' | C1' | C2' | H1' | 117.5° | 118.6° |
| O4' | C1' | C2' | O2' | 138.1° | 155.1° |
| O4' | C1' | N1 | C4 | 51.3° | 128.6° |
| O4' | C1' | N1 | H1' | 118.9° | 122.9° |
| O4' | C1' | N1 | C1 | 129.3° | 51.4° |
| O4' | C1' | C2' | H2' | 98.4° | 81.2° |
| C1' | O4' | C4' | H4' | 84.4° | 93.0° |
| C10 | C2 | C4 | C3 | 178.6° | 179.8° |
| C10 | C2 | C4 | N1 | 178.4° | 179.8° |
| C10 | C2 | C3 | O4 | 4.9° | 0.3° |
| C10 | C2 | C3 | N3 | 177.4° | 179.7° |
| C2 | C10 | C9 | H1 | 179.8° | 180.0° |
| C1' | C2' | O2' | H2' | 122.6° | 123.7° |
| C2' | C1' | N1 | C4 | 68.5° | 117.2° |
| C2' | C1' | N1 | H1' | 121.2° | 122.9° |
| C2' | C1' | N1 | C1 | 110.8° | 62.8° |
| C1' | C2' | C3' | H3' | 117.6° | 139.7° |
| C1' | C2' | O2' | HO2' | 64.9° | 174.2° |
| O2' | C2' | C1' | N1 | 101.2° | 86.4° |
| O2' | C2' | C1' | H1' | 20.6° | 36.5° |
| O2' | C2' | C3' | H3' | 123.1° | 102.1° |
| C2 | C4 | N1 | C1' | 179.8° | 180.0° |
| C2 | C4 | N1 | C1 | 0.5° | 0.0° |
| C4 | C2 | C3 | O4 | 176.8° | 180.0° |
| C4 | C2 | C3 | N3 | 1.0° | 0.0° |
| C4 | C2 | C10 | H2 | 179.9° | 179.8° |
| C4 | N1 | C1' | C1 | 179.4° | 180.0° |
| N1 | C4 | C2 | C3 | 0.2° | 0.0° |
| C4 | N1 | C1 | N3 | 0.4° | 0.0° |
| C4 | N1 | C1 | O2 | 179.7° | 180.0° |
| C4 | N1 | C1' | H1' | 170.3° | 5.6° |
| C1' | N1 | C1 | N3 | 179.7° | 180.0° |
| C1' | N1 | C1 | O2 | 0.9° | 0.1° |
| N1 | C1' | C2' | H2' | 22.3° | 37.3° |
| C2 | C3 | O4 | N3 | 177.7° | 180.0° |
| C2 | C3 | N3 | C1 | 1.2° | 0.0° |
| C3 | C2 | C10 | H2 | 1.5° | 0.1° |
| C2 | C3 | N3 | H3 | 178.8° | 179.9° |
| N1 | C1 | N3 | C3 | 0.5° | 0.1° |
| N1 | C1 | N3 | O2 | 179.4° | 179.9° |
| C1 | N1 | C1' | H1' | 10.4° | 174.3° |
| N1 | C1 | N3 | H3 | 179.5° | 180.0° |
| O4 | C3 | N3 | C1 | 176.7° | 180.0° |
| O4 | C3 | N3 | H3 | 3.3° | 0.1° |
| C3 | N3 | C1 | H3 | 180.0° | 179.9° |
| C3 | N3 | C1 | O2 | 178.9° | 180.0° |
| O2 | C1 | N3 | H3 | 1.1° | 0.1° |
| H1' | C1' | C2' | H2' | 144.1° | 160.2° |
| H2 | C10 | C9 | H1 | 0.2° | 0.0° |
| H5' | C5' | C4' | H4' | 165.8° | 66.0° |
| H5'' | C5' | C4' | H4' | 74.1° | 174.0° |
| H3' | C3' | O3' | HO3' | 58.2° | 61.2° |
| H3' | C3' | C2' | H2' | 0.3° | 21.5° |
| H3' | C3' | C4' | H4' | 143.7° | 123.7° |
| H2' | C2' | O2' | HO2' | 57.7° | 62.1° |
