English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

A1ENJ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C8	doub	1.22Å	1.24Å
O2	C8	sing	1.35Å	1.24Å
C8	C5	sing	1.48Å	1.51Å
C5	C6	doub	1.39Å	1.39Å	Aromatic
C5	C4	sing	1.40Å	1.39Å	Aromatic
C6	C7	sing	1.39Å	1.40Å	Aromatic
C4	C3	doub	1.38Å	1.39Å	Aromatic
C7	N1	sing	1.40Å	1.39Å
C7	C2	doub	1.39Å	1.42Å	Aromatic
C3	C2	sing	1.38Å	1.40Å	Aromatic
C2	C1	sing	1.51Å	1.50Å
N1	H1	sing	0.97Å	1.00Å
N1	H2	sing	0.97Å	1.00Å
C4	H3	sing	1.08Å	1.08Å
C6	H4	sing	1.08Å	1.08Å
C1	H5	sing	1.09Å	1.10Å
C1	H6	sing	1.09Å	1.10Å
C1	H7	sing	1.09Å	1.10Å
C3	H8	sing	1.08Å	1.08Å
O2	H9	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C8	O2	124.1°	120.0°
O1	C8	C5	117.9°	120.0°
O2	C8	C5	118.0°	120.0°
C8	O2	H9	109.5°	117.0°
C8	C5	C6	119.8°	120.1°
C8	C5	C4	120.5°	120.1°
C6	C5	C4	119.7°	119.8°
C5	C6	C7	120.0°	119.8°
C5	C6	H4	120.0°	120.1°
C5	C4	C3	120.5°	120.0°
C5	C4	H3	119.7°	120.0°
C6	C7	N1	119.0°	120.0°
C6	C7	C2	120.4°	120.0°
C7	C6	H4	120.0°	120.1°
C4	C3	C2	121.2°	120.2°
C3	C4	H3	119.7°	120.0°
C4	C3	H8	119.4°	119.9°
N1	C7	C2	120.6°	120.0°
C7	N1	H1	109.5°	120.0°
C7	N1	H2	109.5°	120.0°
C7	C2	C3	118.1°	120.2°
C7	C2	C1	121.1°	119.9°
C3	C2	C1	120.8°	119.9°
C2	C3	H8	119.4°	119.8°
C2	C1	H5	109.5°	109.4°
C2	C1	H6	109.5°	109.5°
C2	C1	H7	109.4°	109.5°
H1	N1	H2	109.5°	120.1°
H5	C1	H6	109.5°	109.5°
H5	C1	H7	109.5°	109.4°
H6	C1	H7	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C8	O2	C5	178.3°	180.0°
O1	C8	C5	C6	0.6°	0.0°
O1	C8	C5	C4	178.3°	180.0°
O1	C8	O2	H9	0.0°	0.1°
O2	C8	C5	C6	179.1°	180.0°
O2	C8	C5	C4	0.2°	0.0°
C8	C5	C6	C4	178.9°	180.0°
C8	C5	C6	C7	179.3°	180.0°
C8	C5	C4	C3	179.0°	180.0°
C8	C5	C4	H3	1.0°	0.3°
C8	C5	C6	H4	0.6°	0.0°
C5	C8	O2	H9	178.3°	179.9°
C5	C6	C7	H4	180.0°	180.0°
C6	C5	C4	C3	0.1°	0.0°
C5	C6	C7	N1	180.0°	180.0°
C5	C6	C7	C2	0.8°	0.0°
C6	C5	C4	H3	179.9°	179.7°
C4	C5	C6	C7	0.4°	0.0°
C5	C4	C3	H3	180.0°	179.7°
C5	C4	C3	C2	0.1°	0.0°
C4	C5	C6	H4	179.5°	180.0°
C5	C4	C3	H8	179.9°	179.7°
C6	C7	N1	C2	179.2°	180.0°
C6	C7	C2	C3	0.8°	0.0°
C6	C7	C2	C1	179.7°	180.0°
C6	C7	N1	H1	180.0°	0.0°
C6	C7	N1	H2	60.0°	179.7°
C4	C3	C2	C7	0.5°	0.0°
C4	C3	C2	H8	180.0°	179.7°
C4	C3	C2	C1	179.9°	180.0°
N1	C7	C2	C3	180.0°	180.0°
N1	C7	C2	C1	0.6°	0.0°
C7	N1	H1	H2	120.0°	179.7°
N1	C7	C6	H4	0.0°	0.0°
C7	C2	C3	C1	179.5°	180.0°
C2	C7	N1	H1	0.8°	180.0°
C2	C7	N1	H2	119.2°	0.3°
C2	C7	C6	H4	179.2°	180.0°
C7	C2	C1	H5	89.7°	90.1°
C7	C2	C1	H6	150.3°	150.0°
C7	C2	C1	H7	30.3°	29.9°
C7	C2	C3	H8	179.6°	179.7°
C2	C3	C4	H3	179.9°	179.7°
C3	C2	C1	H5	89.7°	90.0°
C3	C2	C1	H6	30.3°	30.0°
C3	C2	C1	H7	150.2°	150.0°
C2	C1	H5	H6	120.0°	120.0°
C2	C1	H5	H7	120.0°	120.0°
C2	C1	H6	H7	120.0°	120.1°
C1	C2	C3	H8	0.1°	0.3°
H3	C4	C3	H8	0.1°	0.0°
H5	C1	H6	H7	120.0°	120.0°

251422

PDB entries from 2026-04-01

PDB statistics

PDBj update info

Contact PDBj

numon